Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ismenius_20[genbank_20GCA_5F001485965.1_202015-12-16] 160,084 sequences; 259,837,422 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq41575 194 1e-44 seq20 131 1e-25 seq1641 86.0 5e-12 >seq41575 Length=3752 Score = 194 bits (214), Expect = 1e-44 Identities = 779/1206 (65%), Gaps = 47/1206 (4%) Strand=Plus/Plus Query 30232 TACTTTGTAGAGTGGGGTGTTTACGACAGACAATATCCAGCAGA-CTTAGTTCCCGTCCC 30290 ||||| ||||| |||||||| || || ||| || | || | || | || | || Sbjct 1085 TACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTGGATCGTA-TACCTATACC 1143 Query 30291 CAACCTTACGCATCTTTTGTATGGCTTTGTGCCTCTCTGCGGTGGAGATGGTATAAACGA 30350 || ||||| ||| | | || |||||| | || | ||||| || || || || || || Sbjct 1144 TAATCTTACTCATTTACTCTACGGCTTTATTCCAATTTGCGGCGGTGACGGCATCAATGA 1203 Query 30351 TAGCTTAAAGCAAGTGCCGGGTTCGTTTGAGGCTTTACAAAAATCTTGCGCGGGTCGAGA 30410 ||| ||||| | | || || | || |||| || || || || || Sbjct 1204 TAGTTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTACAGCGGTCCTGTAGCGGCCGTGA 1263 Query 30411 GGATTTTAAAGTGACGATTCACGATATTTGGGGCGCTCTTCAAAAACCACAAAAAGGAGT 30470 ||| || ||||| | || |||||| |||| || | |||||||||||||||||| | Sbjct 1264 GGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAACCACAAAAAGGATT 1323 Query 30471 GGGCGCTTGGGACGATCCGTATAAAGGAAATTTTGGCCAACTGATGGCGATTAAAAGACA 30530 | | ||| |||| || || ||||| || ||||| ||| | ||| | | |||| | Sbjct 1324 GTCTTCATGGAACGAGCCCTACAAAGGCAACTTTGGTCAATTAATGTC-ACTAAA----A 1378 Query 30531 CAATCCCGACC-----TTACGATTTTACCGTCTATTGGCGGGTGGACACTTAGCGACCCT 30585 ||| |||| || | | |||| | || |||||||| |||||||| ||| ||| ||| Sbjct 1379 CAAGCCCGCCCTGAATTGAAGATTCTTCCCTCTATTGGTGGGTGGACGCTTGCCGATCCT 1438 Query 30586 TTCTTTAAATTGAGTTCTGCCGAA---AATCGCGC-CGTTTTCGTTGAGTCCGCACGAGA 30641 ||| || || ||| || | || || | | || ||| || |||| | | || Sbjct 1439 TTC-TTCTTTTTAGT--TGACAAATCTAAGAGAACACGATTT-GTGCAGTCAGTAAAGGA 1494 Query 30642 GTATTTGCGCACATGGAAATTTTTTGACGGACTAGACATCGACTGGGAGTTTCCGGGCGG 30701 || | | | ||||||||||| || || || | || ||||| |||||||| || || || Sbjct 1495 GTTTCTTCTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAGTTCCCTGGTGG 1554 Query 30702 TAAAGGTGCTAATCCCGAATTAGGAGATCCAGAAAAGGATGGAGTAACATATGTGCAGTT 30761 ||||||||||| || || | || |||||| ||||| | ||||| || Sbjct 1555 CAAAGGTGCTAACCCTGACCTCGGTAGCCCAGAA---GATGGTGATTGTTATGTAAGTTT 1611 Query 30762 ATTGAAAGAGCTCAGAGAAATGCTAAACGATCTTTC--TAAAGAAACAGGGAAAAAATAC 30819 ||||||| | | || ||||| | || || || ||||| || || |||||| Sbjct 1612 GATGAAAGAATTACGTGAGATGCTCGATGAGCTCTCAGCTAAGAA--TGGTAAGAAATAC 1669 Query 30820 CAGCTCACCTCGGCGATTAGCGCGGGGTACGATAAAATCTCTATAGTTAATTATGAAAAT 30879 | | || || || |||||||| || | ||||||||| | ||| | |||| || Sbjct 1670 GAATTAACTTCTGCTATTAGCGCTGGATGGGATAAAATCCAAGTTGTTGACTATGGCAAG 1729 Query 30880 GCGCAAGAGTATCTTGATCACATTTTTGTTATGACGTACGATTTTAAAGGCGCTTGGTCT 30939 || ||| | ||| | ||||| ||||| | |||| ||||| || || || || ||||| Sbjct 1730 GCTCAAAATTATATGGATCATATTTTCTTGATGAGTTACGACTTCAAGGGAGCCTGGTC- 1788 Query 30940 AACACGGACT-TGGGATATCACACTACACTTTATTCACCCTCTTGGAACGCTGAAGAAAA 30998 || ||| | ||| |||| || || | || | || | ||||| | | |||| Sbjct 1789 AAATGATACTCTAGGACATCAAACGCCATTGTACGCTCCTGCGTGGAATCCCAAGGAAAC 1848 Query 30999 ATATACTGCCGAGTACGCGACAAAGGAGTTGTTAAAACAAAACGTCAATAGTAAGAAAAT 31058 || || | || | || ||| | ||| | || || ||| |||||| || Sbjct 1849 TTACACATCTGACTTCGGAGTAAAATACTTGCTGGCGCAGGGAGTGAATCCTAAGAAGAT 1908 Query 31059 AGTGCTAGCTGTTGCAATGTACGGAAGAGGGTGGACGGGTGTGCATGACATAAAAAACAA 31118 || ||| |||||| ||||| || | || ||||| || || ||||| || |||| Sbjct 1909 TGTAGTAGGTGTTGCTATGTATGGTCGTGGCTGGACTGGCGTTCATGATTACGAAGACAA 1968 Query 31119 CAATCCCTTTACGGGTGTAGCTCAGGGGCCGATTAAAGGAACTTGGGAAAGTGGAGTTGT 31178 || |||||| || || ||| || || | |||||||||||| || |||||| || Sbjct 1969 CATTCCCTTCACAGGCAACGCTACTGGACCTGTCAAAGGAACTTGGCAAGATGGAGTGGT 2028 Query 31179 AGATTACA--AAGATT-----TGATA----CAAAGGTACACCGACACTT--ATTATGACT 31225 || |||| ||||| ||| | |||| | | | | || |||| ||| Sbjct 2029 TGACTACAGGGAGATTGCGAATGAAATTGCTCAAGGCA-AGTGGGAGTTCCATTACGACA 2087 Query 31226 CTGTAGCGCAAGCGGCATATGCGTTCGCAGAGAATGT--TGGTGATCTACTTACTTACGA 31283 ||| || ||||| | || ||| |||| || | ||| ||||| | || || || Sbjct 2088 ATGTCGCCCAAGCCCCTTA--CGTCTTCAGACCATCTACTGGAGATCTCGTAACCTATGA 2145 Query 31284 TAACCCAACGAGTGTGCAAGCTAAGGGAAAGTTTGTAATAGACAACAATTTGGGTGGTTT 31343 ||| | | || | ||||| || | ||||| | | ||||| | |||||| | Sbjct 2146 TAATGCTAGATCCGTTATTGAAAAGGGTAAATATGTAAGAAATAACAAGCTAGGTGGTCT 2205 Query 31344 GTTTGCGTGGGAACTGGACGCCGACAATGGCGACATTCTTAACAGCATGAACGAGGGTTT 31403 ||||| |||||| ||||||| || || || ||| | || || ||||||| |||| | Sbjct 2206 CTTTGCTTGGGAAGTGGACGCTGATAACGGTGACCTACTGAATGCCATGAACATGGGTCT 2265 Query 31404 AGGTAA 31409 ||||| Sbjct 2266 CGGTAA 2271 >seq20 Length=148542 Score = 131 bits (144), Expect = 1e-25 Identities = 407/617 (66%), Gaps = 16/617 (3%) Strand=Plus/Minus Query 103773 ATTGATTATCTCATCTTACCAAACTTCACACTGTGGGACCATAACTTTTTAGTGTTTATG 103832 ||||| ||| | ||||| ||| |||| | | |||||||||| || ||| | | ||| | Sbjct 87099 ATTGACTATTTGATCTTGCCACACTTTATATTGTGGGACCACAATTTTGTCATTTTTCTC 87040 Query 103833 AATAAAAAATTTAATAGCAAAAA-GTCTGGAGGCTTGGTAAACATTTGGGGTTGTATGCA 103891 || ||| || || |||| | | | || |||||| |||||| | | |||| Sbjct 87039 AACAAAGCGTTCAACTCCAAACACGACAACAG-CTTGGTGGACATTTCGAGCGCCCTGCA 86981 Query 103892 GAAAATTCCCCTTACACAGGGTGTTATAAAAGATCTTATACAAAACAAAAACGGGTACGC 103951 |||||| || ||||| || | || ||||| | | || | ||||||||| ||||| Sbjct 86980 AAAAATTAAACTCACACACGGCATCATCAAAGACCAATTGCAGAGCAAAAACGGTTACGC 86921 Query 103952 TGGCCAATATTTGTACTCGACGTTTTTAAACACTTCCAGCTTTTATGCTAATGTTCAGTG 104011 | ||||||||||| ||||||||| | ||||| || ||| ||||| || || ||||| Sbjct 86920 CGTTCAATATTTGTATTCGACGTTTCTCAACACCGCCTCCTTCTATGCCAACGTGCAGTG 86861 Query 104012 TTTTAACGGGATCAATGAGGTTATACCACC-CTTACC-GAGTATACTACGCTATTATGGT 104069 ||| ||||| |||| || | | || || | || | || || ||||| || || Sbjct 86860 TTTGAACGGCGTCAACGAAATCGTTCCGCCGCGCGCCAGCGTCAAC--CGCTACTACGGC 86803 Query 104070 CGACGAGT-GCCATCTGTGAAAGTGTGGAACACTCGCCATCCTAACATCTCGCAACTCTC 104128 || || || | || | ||| | |||| ||| || || || |||||| || || Sbjct 86802 CGGCGGGTGGGCAAC-GTGCGCGCCTGGACCACGCGACACCCCAACATCAGCCAGCTGAG 86744 Query 104129 CACACAATTTTCGAGAGT---AATTGAAGAGAAAAACGGAGTGAATTGGAACATTAAAGT 104185 ||| || | ||| || | | || ||| | |||||||| | ||||| Sbjct 86743 CACGCAGGTGTCGGACGTGCGCCTCAACGACTCCAACACCG---ATTGGAACGTCAAAGT 86687 Query 104186 TGGTCTCGGAACGTTTGTAGGAGCCAATAGAGATTGCGACGGAGATAAAGAAGTTATCAC 104245 || | || | ||| || ||||| | |||||||| || || ||| || | ||||| Sbjct 86686 GGGCTTGGGCATATTTCCGGGCGCCAACACCGATTGCGATGGCGACAAAAAAATCATCAC 86627 Query 104246 GTATTTACCTTATCCAAACTCTTTAATTGAACTGGAATCGTTGTTGTATTGCGATCCTAA 104305 | | | || | || ||| | | || || ||||| | || ||||| |||| || Sbjct 86626 CTTTCTGCCGCAACCCAACAGTCTCATCGACCTGGAGTGTTTATTGTACGGCGACCCGCG 86567 Query 104306 ATACAGTTTCTTATGCTTTGACAA-AAACAAATTATCGTTTGTCTCACAACAGATATACT 104364 | | |||| ||||||| ||||| || | | | | | || || || ||||| || |||| Sbjct 86566 GTTTAATTTCATATGCTTCGACAAGAATCGACTCAGC-TTCGTGTCCCAACAAATTTACT 86508 Query 104365 ATTTATACAAAAACATT 104381 || | | |||||||||| Sbjct 86507 ATCTGTTCAAAAACATT 86491 Score = 102 bits (112), Expect = 7e-17 Identities = 134/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 114942 GTGCGGTGTGTTAGTACCGTTTCGTACACAATGAAGACCTTCCGCTAGGCGATTACCCAT 115001 |||||| ||| || ||||| || | || || | || |||||| | |||||| |||| Sbjct 99233 GTGCGGCAAGTTGGTGCCGTTGCGCATCCATTGCAAACTTTCCGCCATGCGATTGCCCAC 99174 Query 115002 AAAAGATTGATTAATACTCCATTGGTCCAAACGAGTGCCTTCTAATTTTTCATATCCTGT 115061 ||| || ||||| | |||| ||||| ||||| ||||| || | |||||| | || || Sbjct 99173 AAACGACTGATTCTTGGTCCACTGGTCGAAACGCGTGCCCTCCACTTTTTCGTGGCCCGT 99114 Query 115062 AATATTTTTTCCGATAAACTCTTTATATATATTATCAGGGGTGTTGTTAAAAAACATATA 115121 || | ||| |||||||| |||| || || || ||||||||||| ||||| || Sbjct 99113 GTGGTTGCTCTTGATGAACTCTTTGAATATGTTGTCGGGAGTGTTGTTAAACAACATGTA 99054 Query 115122 CGGAAT 115127 ||| || Sbjct 99053 CGGTAT 99048 Score = 102 bits (112), Expect = 7e-17 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 221 TGTTTAAAGAGATTCGTAGGGTTCAGCCCGACACAATGAAACTTATCTGCAACTGGAGCG 280 |||| ||||||||||| | || |||| ||||| ||||| || | ||||||||||| Sbjct 136717 TGTTCAAAGAGATTCGCAATGTGAAGCCGGACACGATGAAGCTGGTGCTCAACTGGAGCG 136776 Query 281 GTAAAGAGTTCCTTCGCGAAACTTGGACACGTTTTATCTCGGAAGAGTTTCCCATCACCA 340 | |||||||| | || ||||||||||| ||||| || ||| |||||||| || Sbjct 136777 GCAAAGAGTTTTTGCGTGAAACTTGGACCCGTTTCGTCGAGGACAGTTTTCCCATTGTCA 136836 Query 341 CAGATCAGGAGATTATGGATTTGTGGTTCGAGCTTCAGCTTCGCCCCATGCAACCCAACC 400 || |||||| | ||||| ||| ||| | | | || | |||| | ||||||| Sbjct 136837 ACGACCAGGAGGTGATGGACGTGTTTCTCGTGATCAACCTGAGACCCACTCGGCCCAACC 136896 Query 401 GTTGTTACA 409 ||||||||| Sbjct 136897 GTTGTTACA 136905 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 614 ACTTCCACAGGCCCCTCGTATACGTGGGCACCACTTCCGCGGAAATTGAAGAAATTATGA 673 |||| ||| |||| |||| ||| | |||||| || || ||| || |||||| | | Sbjct 137110 ACTTTTACAAGCCCATCGTGTACATTGGCACCGACTCTGCCGAAGAGGAGGAAATTCTCA 137169 Query 674 TTGAAGTTTCTCTTCTGTTTAAGATTAAAGAGTTCGCTCCGGACGTACCTCTGTTTACCG 733 | ||||| || || |||| || |||||||||| || || |||| |||||||| |||| Sbjct 137170 TCGAAGTGTCGCTCGTGTTCAAAGTTAAAGAGTTTGCACCTGACGCGCCTCTGTTCACCG 137229 Query 734 GACCCGCATATTAA 747 | |||||||||||| Sbjct 137230 GTCCCGCATATTAA 137243 >seq1641 Length=3631 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||||||||| | | | ||| | ||| | |||| ||||||||||||||||| |||| Sbjct 2385 ACCTCCGCGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAGA 2326 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 |||| || | || || || || ||||| | | || ||||| ||||| || || Sbjct 2325 CAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGTGG 2266 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || |||||| || ||||| || | | |||| ||||| | | ||| Sbjct 2265 AATACCTTCCTTATCTTGGATTTTAGCTTTTACATTTTCTATAGTATCAGAGGCCTCGAC 2206 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||||| || ||||||||||| || || || || || ||||| ||||| ||| Sbjct 2205 CTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCATTGTG 2154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420429328904084