Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20ismenius_20[genbank_20GCA_5F001485965.1_202015-12-16]
160,084 sequences; 259,837,422 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq16183 145 7e-30
seq32113 140 3e-28
seq48995 113 4e-20
seq1641 95.1 1e-14
seq20 93.3 4e-14
>seq16183
Length=3749
Score = 145 bits (160), Expect = 7e-30
Identities = 176/240 (73%), Gaps = 0/240 (0%)
Strand=Plus/Plus
Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828
||| ||| || ||| || | | |||||||| |||||||||||||||||||| || |
Sbjct 841 AAAATTTGCATTCCACCCCGTAGACGCAACACTAAGTGCAAAGTAGATTCCTTCTGGATA 900
Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888
||||| || || ||| ||| ||||| || |||||| | || || | ||||||
Sbjct 901 TTATAGTCTGACAGCGTGCGCCCATCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGT 960
Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948
|||||||||||||| ||||| ||||| | || |||||||| ||| ||| || |||
Sbjct 961 TGATCTGGAGGAATGCCTTCCTTGTCTTGTATCTTTGCCTTTACGTTTTCGATTGTATCA 1020
Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008
| || || || | ||||||||||| ||||| | |||||| || ||||| ||||||
Sbjct 1021 GAAGCTTCCACTTCCAATGTGATGGTTTTCCCAGTTAAAGTTTTTACGAAGATTTGCATG 1080
Score = 122 bits (134), Expect = 8e-23
Identities = 178/247 (72%), Gaps = 6/247 (2%)
Strand=Plus/Plus
Query 94765 TTTA-AAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTT 94822
|||| |||| ||| || ||| ||||||| || | |||| |||||||||||||||||
Sbjct 379 TTTACAAATATTTGCATTCCACCTCTCAGCCGTAGTACCAGATGCAAAGTAGATTCCTTC 438
Query 94823 TGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTA 94880
|| | || || || ||||||| | ||| || ||||| ||||| |||| || |
Sbjct 439 TGAATATTGTAGTCAG--ATAGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAA 496
Query 94881 ATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGA 94940
||||||||||||||| ||||| || ||||| || | |||||| ||||| || | |
Sbjct 497 GTCTTTGCTGATCTGGGGGAATGCCCTCTTTATCCTGAATTTTCGCCTTAACATTTTCAA 556
Query 94941 CAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGA 95000
|| |||| || || || | ||||| ||||| ||||| || ||||| ||||| |
Sbjct 557 TTGTATCAGAAGCTTCCACTTCCAATGTGATAGTTTTGCCAGTCAGTGTTTTTACAAATA 616
Query 95001 TCTGCAT 95007
| |||||
Sbjct 617 TTTGCAT 623
Score = 113 bits (124), Expect = 4e-20
Identities = 177/250 (71%), Gaps = 5/250 (2%)
Strand=Plus/Plus
Query 94761 GTTTTTTAAAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCC 94819
|||||| |||| ||| || ||| ||||||| || | || | |||||||||||||||
Sbjct 604 GTTTTTACAAATATTTGCATTCCACCTCTCAGCCGTAGTACTAGGTGCAAAGTAGATTCT 663
Query 94820 TTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGA 94877
|| || | ||| ||||| ||||||| | ||| || ||||| ||||| |||| |
Sbjct 664 TTCTGAATGTTGTAATCAG--ATAGTGTGCGTCCATCTTCTAGCTGCTTTCCAGCAAAAA 721
Query 94878 TTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGC 94937
| | ||||||||||||||| ||||| || ||||| || | |||||| || || ||
Sbjct 722 TAAGTCTTTGCTGATCTGGGGGAATTCCCTCTTTATCCTGAATTTTCGCTTTAACATTTT 781
Query 94938 CGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAA 94997
| | || |||| | || || || | ||||| || || ||||| | || || || |
Sbjct 782 CAATTGTATCAGAAGGCTCAACTTCCAAAGTGATAGTCTTGCCAGTCAATGTCTTTACGA 841
Query 94998 AGATCTGCAT 95007
| || |||||
Sbjct 842 AAATTTGCAT 851
Score = 111 bits (122), Expect = 1e-19
Identities = 171/242 (71%), Gaps = 4/242 (2%)
Strand=Plus/Plus
Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827
|||| ||| || || ||||||| || | || || || |||||||||||||| || |
Sbjct 156 AAAAATTTGCATCCCACCTCTCAGACGAAGTACTAAATGTAAAGTAGATTCCTTCTGAAT 215
Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885
|| || || || |||| | ||| || ||||| ||||| |||| || | |||
Sbjct 216 ATTGTAGTCAGACA--GTGTACGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGCCTT 273
Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945
|| || ||||||||||| ||||| || || | |||||| ||||| || ||| |||
Sbjct 274 TGTTGGTCTGGAGGAATTCCTTCCTTATCTTGAATTTTGGCCTTAACATTTTCGATTGTG 333
Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005
|||| | | || || || | ||||| || || ||||| || || || ||||| || |||
Sbjct 334 TCAGAGGGCTCAACTTCCAGTGTGATAGTCTTGCCAGTCAGTGTCTTTACAAATATTTGC 393
Query 95006 AT 95007
||
Sbjct 394 AT 395
Score = 102 bits (112), Expect = 7e-17
Identities = 116/156 (74%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| ||||| |||||||| | || || | |||||| ||||| || ||||| ||||||||
Sbjct 12 ATCTTCCAGTTGTTTTCCAGCGAAAATCAGTCTTTGTTGATCAGGGGGAATGCCTTCTTT 71
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
||| | ||| |||||||| || ||| ||||||| || || || | || ||
Sbjct 72 GTCCTGAATCTTTGCCTTAACATTTTCGATTGTGTCAGAAGCTTCCACTTCTAAGGTAAT 131
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||| ||||| || ||||||||||| || |||||
Sbjct 132 AGTTTTGCCAGTCAGTGTTTTCACAAAAATTTGCAT 167
>seq32113
Length=13445
Score = 140 bits (154), Expect = 3e-28
Identities = 162/216 (75%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC-GCTCATAGTGTTGGA 94851
||||| || || || | |||||||||||||| | |||||||| | | || || |
Sbjct 7348 CGCAATACTAAATGTAGGGTAGATTCCTTTTGAATATTATAATCAGATAAT-GTACGGCC 7406
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| ||||| |||||||| |||| || | || || |||||||| |||||||| |||||
Sbjct 7407 ATCTTCCAGTTGTTTTCCAGCAAAAATCAGCCTCTGTTGATCTGGGGGAATACCCTCTTT 7466
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
||| | || |||||||| || ||| |||||| | | || || || | |||||
Sbjct 7467 GTCTTGGATCTTTGCCTTCACATTTTCGATAGTGTCGGACGGTTCTACCTCTAAAGTGAT 7526
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||||||| |||||||| || ||||||||||||||
Sbjct 7527 GGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 7562
Score = 125 bits (138), Expect = 6e-24
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858
|| || |||||||||||||| ||||| | |||||| || || |||| | |||||||
Sbjct 5986 ACTAAATGCAAAGTAGATTCTTTTTGGATGTTATAGTCCGACAGAGTGCGGCCATCCTCC 6045
Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918
| |||||| || | ||||||| | || || ||||| ||||| || || ||||| |
Sbjct 6046 AACTGTTTACCAGCGAAGATTAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGG 6105
Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978
|| || ||||| || ||| |||||| | | || || || | |||||||| ||
Sbjct 6106 ATCTTAGCCTTAACATTTTCGATAGTGTCGGATGGCTCCACCTCTAAAGTGATGGTCTTC 6165
Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||||||||| || || |||||||||||
Sbjct 6166 CCAGTAAGAGTCTTAACGAAGATCTGCAT 6194
Score = 118 bits (130), Expect = 9e-22
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852
||||| |||||||| | ||||||||| ||||| | ||||| || | ||||
Sbjct 7576 CGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGAAAGAGTGCGTCCG 7635
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
|| |||| || ||||| | || || || | ||| |||||||||||||| ||||| |||
Sbjct 7636 TCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTG 7695
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | |||||| || || || | | ||| || | | || || || | || |||
Sbjct 7696 TCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTAATG 7755
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||| || ||||| ||||||||||||||||||||
Sbjct 7756 GTTTTACCCGTAAGTGTTTTCACAAAGATCTGCAT 7790
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
||||||| || || || |||||||||||||| || || || || | || || ||
Sbjct 6196 CCTCCTCGTAAACGTAATACCAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGAG 6255
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| | |||||||||||| || || | || || | | ||| |||||||| |||
Sbjct 6256 AGAGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCTGGGGGA 6315
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
||||| |||||||| | || || || || || | | |||||| | | | || ||
Sbjct 6316 ATACCCTCTTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCTGAGGGTTCAACT 6375
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | || || ||||| || || || || || ||||||||||||||
Sbjct 6376 TCTAATGTAATAGTTTTCCCTGTCAGTGTCTTTACAAAGATCTGCAT 6422
>seq48995
Length=1108
Score = 113 bits (124), Expect = 4e-20
Identities = 177/252 (70%), Gaps = 1/252 (0%)
Strand=Plus/Minus
Query 94748 TTTATCGCTAACGGTTTTTT-AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTG 94806
|||| | ||| |||||| |||| ||| || || ||||| | |||| || |||||
Sbjct 252 TTTACCAGTAAGAGTTTTTACAAAAATTTGCATCCCACCTCTTAGACGCAGAACTAAGTG 193
Query 94807 CAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTT 94866
|||||||||||| ||||| | ||||| || || |||| ||| || ||||||||
Sbjct 192 CAAAGTAGATTCTTTTTGAATATTATAGTCAGACAGAGTGCGTCCATCTTCTAGCTGTTT 133
Query 94867 TCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGC 94926
|| | || || | || || || ||||||||||||||||| ||||| | |||||| ||
Sbjct 132 GCCAGCGAAAATCAGCCTCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGAATTTTAGC 73
Query 94927 CTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAG 94986
||| || | | || |||| || || || | ||||| ||||| ||||| ||
Sbjct 72 CTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAAAGTGATAGTTTTCCCAGTCAG 13
Query 94987 AGTTTTCACAAA 94998
|| || |||||
Sbjct 12 TGTCTTTACAAA 1
Score = 109 bits (120), Expect = 5e-19
Identities = 168/240 (70%), Gaps = 0/240 (0%)
Strand=Plus/Minus
Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827
|||| ||| || || ||||||| || | || || || |||||||||||||| || |
Sbjct 459 AAAAATTTGCATCCCACCTCTCAGACGAAGTACTAAATGTAAAGTAGATTCCTTCTGAAT 400
Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887
||| || || || ||| ||| || || |||||||| | || || | || ||
Sbjct 399 GTTGTAGTCTGACAATGTGCGCCCATCTTCAAGTTGTTTTCCAGCGAAAATGAGCCTCTG 340
Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947
|| ||||| ||||| || || || || | ||||||||| || || | | |||||
Sbjct 339 TTGGTCTGGGGGAATCCCCTCCTTATCTTGAATTTTTGCTTTAACATTTTCAATTGTGTC 280
Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | || || |||| || || ||||| |||||||||||||| ||||| || |||||
Sbjct 279 AGAAGGCTCAACTTCAAGAGTAATAGTTTTACCAGTAAGAGTTTTTACAAAAATTTGCAT 220
>seq1641
Length=3631
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
||||| | | ||| | ||| | ||||| || ||||||||||| | ||| || || |
Sbjct 2384 CCTCCGCGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAGAC 2325
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| || ||| || || ||||| || ||||||| || | |||||| ||||| |||
Sbjct 2324 AATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGTGGA 2265
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|||||||| || || | ||||| || || || | | ||| |||| | |||||
Sbjct 2264 ATACCTTCCTTATCTTGGATTTTAGCTTTTACATTTTCTATAGTATCAGAGGCCTCGACC 2205
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | || |||||||| || ||||| || || || || || |||||
Sbjct 2204 TCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCAT 2158
>seq20
Length=148542
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| |||| |||||||||||||| ||||| || | ||| ||||| | ||| || |||
Sbjct 105938 CCGCCTCGCAATCGCAACACCATGTGCACGGTGGCTTCTTTTTGTATGTTGTAGTCGGCG 105997
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
|| || ||| || || |||||||| || || |||| | || || ||||| ||
Sbjct 105998 ATCGTTTTGTCGTCTTCGAGCTGTTTGCCCGCATAGATGAGTCGCTGTTGATCGACGGGC 106057
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGAC-GGCGCCGACAGTGTCAGCGTGGTCGAC 94959
| |||||||||||| ||||||| ||||| | | | | ||| || ||| | |
Sbjct 106058 ACACCTTCTTTGTCGGCAATTTTTTGTTTGACTTGAGAC-AAAGTTTCCGCGGAGCTGGT 106116
Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || ||||| ||||| || || | ||||| ||||| || |||||
Sbjct 106117 TTCGATTGTGATCGTTTTGCCCGTTAATGTTTTGACAAATATTTGCAT 106164
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447394146894240
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