Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ismenius_20[genbank_20GCA_5F001485965.1_202015-12-16] 160,084 sequences; 259,837,422 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq16183 145 7e-30 seq32113 140 3e-28 seq48995 113 4e-20 seq1641 95.1 1e-14 seq20 93.3 4e-14 >seq16183 Length=3749 Score = 145 bits (160), Expect = 7e-30 Identities = 176/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || ||| || | | |||||||| |||||||||||||||||||| || | Sbjct 841 AAAATTTGCATTCCACCCCGTAGACGCAACACTAAGTGCAAAGTAGATTCCTTCTGGATA 900 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 ||||| || || ||| ||| ||||| || |||||| | || || | |||||| Sbjct 901 TTATAGTCTGACAGCGTGCGCCCATCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGT 960 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 |||||||||||||| ||||| ||||| | || |||||||| ||| ||| || ||| Sbjct 961 TGATCTGGAGGAATGCCTTCCTTGTCTTGTATCTTTGCCTTTACGTTTTCGATTGTATCA 1020 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | || || || | ||||||||||| ||||| | |||||| || ||||| |||||| Sbjct 1021 GAAGCTTCCACTTCCAATGTGATGGTTTTCCCAGTTAAAGTTTTTACGAAGATTTGCATG 1080 Score = 122 bits (134), Expect = 8e-23 Identities = 178/247 (72%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 94765 TTTA-AAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTT 94822 |||| |||| ||| || ||| ||||||| || | |||| ||||||||||||||||| Sbjct 379 TTTACAAATATTTGCATTCCACCTCTCAGCCGTAGTACCAGATGCAAAGTAGATTCCTTC 438 Query 94823 TGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTA 94880 || | || || || ||||||| | ||| || ||||| ||||| |||| || | Sbjct 439 TGAATATTGTAGTCAG--ATAGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAA 496 Query 94881 ATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGA 94940 ||||||||||||||| ||||| || ||||| || | |||||| ||||| || | | Sbjct 497 GTCTTTGCTGATCTGGGGGAATGCCCTCTTTATCCTGAATTTTCGCCTTAACATTTTCAA 556 Query 94941 CAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGA 95000 || |||| || || || | ||||| ||||| ||||| || ||||| ||||| | Sbjct 557 TTGTATCAGAAGCTTCCACTTCCAATGTGATAGTTTTGCCAGTCAGTGTTTTTACAAATA 616 Query 95001 TCTGCAT 95007 | ||||| Sbjct 617 TTTGCAT 623 Score = 113 bits (124), Expect = 4e-20 Identities = 177/250 (71%), Gaps = 5/250 (2%) Strand=Plus/Plus Query 94761 GTTTTTTAAAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCC 94819 |||||| |||| ||| || ||| ||||||| || | || | ||||||||||||||| Sbjct 604 GTTTTTACAAATATTTGCATTCCACCTCTCAGCCGTAGTACTAGGTGCAAAGTAGATTCT 663 Query 94820 TTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGA 94877 || || | ||| ||||| ||||||| | ||| || ||||| ||||| |||| | Sbjct 664 TTCTGAATGTTGTAATCAG--ATAGTGTGCGTCCATCTTCTAGCTGCTTTCCAGCAAAAA 721 Query 94878 TTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGC 94937 | | ||||||||||||||| ||||| || ||||| || | |||||| || || || Sbjct 722 TAAGTCTTTGCTGATCTGGGGGAATTCCCTCTTTATCCTGAATTTTCGCTTTAACATTTT 781 Query 94938 CGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAA 94997 | | || |||| | || || || | ||||| || || ||||| | || || || | Sbjct 782 CAATTGTATCAGAAGGCTCAACTTCCAAAGTGATAGTCTTGCCAGTCAATGTCTTTACGA 841 Query 94998 AGATCTGCAT 95007 | || ||||| Sbjct 842 AAATTTGCAT 851 Score = 111 bits (122), Expect = 1e-19 Identities = 171/242 (71%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || ||||||| || | || || || |||||||||||||| || | Sbjct 156 AAAAATTTGCATCCCACCTCTCAGACGAAGTACTAAATGTAAAGTAGATTCCTTCTGAAT 215 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 || || || || |||| | ||| || ||||| ||||| |||| || | ||| Sbjct 216 ATTGTAGTCAGACA--GTGTACGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGCCTT 273 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 || || ||||||||||| ||||| || || | |||||| ||||| || ||| ||| Sbjct 274 TGTTGGTCTGGAGGAATTCCTTCCTTATCTTGAATTTTGGCCTTAACATTTTCGATTGTG 333 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 |||| | | || || || | ||||| || || ||||| || || || ||||| || ||| Sbjct 334 TCAGAGGGCTCAACTTCCAGTGTGATAGTCTTGCCAGTCAGTGTCTTTACAAATATTTGC 393 Query 95006 AT 95007 || Sbjct 394 AT 395 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| ||||| |||||||| | || || | |||||| ||||| || ||||| |||||||| Sbjct 12 ATCTTCCAGTTGTTTTCCAGCGAAAATCAGTCTTTGTTGATCAGGGGGAATGCCTTCTTT 71 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| |||||||| || ||| ||||||| || || || | || || Sbjct 72 GTCCTGAATCTTTGCCTTAACATTTTCGATTGTGTCAGAAGCTTCCACTTCTAAGGTAAT 131 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| ||||| || ||||||||||| || ||||| Sbjct 132 AGTTTTGCCAGTCAGTGTTTTCACAAAAATTTGCAT 167 >seq32113 Length=13445 Score = 140 bits (154), Expect = 3e-28 Identities = 162/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC-GCTCATAGTGTTGGA 94851 ||||| || || || | |||||||||||||| | |||||||| | | || || | Sbjct 7348 CGCAATACTAAATGTAGGGTAGATTCCTTTTGAATATTATAATCAGATAAT-GTACGGCC 7406 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| ||||| |||||||| |||| || | || || |||||||| |||||||| ||||| Sbjct 7407 ATCTTCCAGTTGTTTTCCAGCAAAAATCAGCCTCTGTTGATCTGGGGGAATACCCTCTTT 7466 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || |||||||| || ||| |||||| | | || || || | ||||| Sbjct 7467 GTCTTGGATCTTTGCCTTCACATTTTCGATAGTGTCGGACGGTTCTACCTCTAAAGTGAT 7526 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||||| |||||||| || |||||||||||||| Sbjct 7527 GGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 7562 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 || || |||||||||||||| ||||| | |||||| || || |||| | ||||||| Sbjct 5986 ACTAAATGCAAAGTAGATTCTTTTTGGATGTTATAGTCCGACAGAGTGCGGCCATCCTCC 6045 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | |||||| || | ||||||| | || || ||||| ||||| || || ||||| | Sbjct 6046 AACTGTTTACCAGCGAAGATTAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCTTGG 6105 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||| || ||| |||||| | | || || || | |||||||| || Sbjct 6106 ATCTTAGCCTTAACATTTTCGATAGTGTCGGATGGCTCCACCTCTAAAGTGATGGTCTTC 6165 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||||||| || || ||||||||||| Sbjct 6166 CCAGTAAGAGTCTTAACGAAGATCTGCAT 6194 Score = 118 bits (130), Expect = 9e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| |||||||| | ||||||||| ||||| | ||||| || | |||| Sbjct 7576 CGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGAAAGAGTGCGTCCG 7635 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| || ||||| | || || || | ||| |||||||||||||| ||||| ||| Sbjct 7636 TCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTG 7695 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | |||||| || || || | | ||| || | | || || || | || ||| Sbjct 7696 TCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTAATG 7755 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || ||||| |||||||||||||||||||| Sbjct 7756 GTTTTACCCGTAAGTGTTTTCACAAAGATCTGCAT 7790 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||||| || || || |||||||||||||| || || || || | || || || Sbjct 6196 CCTCCTCGTAAACGTAATACCAAGTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGAG 6255 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | |||||||||||| || || | || || | | ||| |||||||| ||| Sbjct 6256 AGAGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCTGGGGGA 6315 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 ||||| |||||||| | || || || || || | | |||||| | | | || || Sbjct 6316 ATACCCTCTTTGTCTTGGATCTTGGCTTTAACATTTTCAATAGTGTCTGAGGGTTCAACT 6375 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || || ||||| || || || || || |||||||||||||| Sbjct 6376 TCTAATGTAATAGTTTTCCCTGTCAGTGTCTTTACAAAGATCTGCAT 6422 >seq48995 Length=1108 Score = 113 bits (124), Expect = 4e-20 Identities = 177/252 (70%), Gaps = 1/252 (0%) Strand=Plus/Minus Query 94748 TTTATCGCTAACGGTTTTTT-AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTG 94806 |||| | ||| |||||| |||| ||| || || ||||| | |||| || ||||| Sbjct 252 TTTACCAGTAAGAGTTTTTACAAAAATTTGCATCCCACCTCTTAGACGCAGAACTAAGTG 193 Query 94807 CAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTT 94866 |||||||||||| ||||| | ||||| || || |||| ||| || |||||||| Sbjct 192 CAAAGTAGATTCTTTTTGAATATTATAGTCAGACAGAGTGCGTCCATCTTCTAGCTGTTT 133 Query 94867 TCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGC 94926 || | || || | || || || ||||||||||||||||| ||||| | |||||| || Sbjct 132 GCCAGCGAAAATCAGCCTCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGAATTTTAGC 73 Query 94927 CTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAG 94986 ||| || | | || |||| || || || | ||||| ||||| ||||| || Sbjct 72 CTTAACATTTTCTATTGTATCAGAAGCTTCCACTTCCAAAGTGATAGTTTTCCCAGTCAG 13 Query 94987 AGTTTTCACAAA 94998 || || ||||| Sbjct 12 TGTCTTTACAAA 1 Score = 109 bits (120), Expect = 5e-19 Identities = 168/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || ||||||| || | || || || |||||||||||||| || | Sbjct 459 AAAAATTTGCATCCCACCTCTCAGACGAAGTACTAAATGTAAAGTAGATTCCTTCTGAAT 400 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| || || || ||| ||| || || |||||||| | || || | || || Sbjct 399 GTTGTAGTCTGACAATGTGCGCCCATCTTCAAGTTGTTTTCCAGCGAAAATGAGCCTCTG 340 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 || ||||| ||||| || || || || | ||||||||| || || | | ||||| Sbjct 339 TTGGTCTGGGGGAATCCCCTCCTTATCTTGAATTTTTGCTTTAACATTTTCAATTGTGTC 280 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || || |||| || || ||||| |||||||||||||| ||||| || ||||| Sbjct 279 AGAAGGCTCAACTTCAAGAGTAATAGTTTTACCAGTAAGAGTTTTTACAAAAATTTGCAT 220 >seq1641 Length=3631 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| | | ||| | ||| | ||||| || ||||||||||| | ||| || || | Sbjct 2384 CCTCCGCGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAGAC 2325 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || ||| || || ||||| || ||||||| || | |||||| ||||| ||| Sbjct 2324 AATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGTGGA 2265 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| || || | ||||| || || || | | ||| |||| | ||||| Sbjct 2264 ATACCTTCCTTATCTTGGATTTTAGCTTTTACATTTTCTATAGTATCAGAGGCCTCGACC 2205 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || |||||||| || ||||| || || || || || ||||| Sbjct 2204 TCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCAT 2158 >seq20 Length=148542 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| |||||||||||||| ||||| || | ||| ||||| | ||| || ||| Sbjct 105938 CCGCCTCGCAATCGCAACACCATGTGCACGGTGGCTTCTTTTTGTATGTTGTAGTCGGCG 105997 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 || || ||| || || |||||||| || || |||| | || || ||||| || Sbjct 105998 ATCGTTTTGTCGTCTTCGAGCTGTTTGCCCGCATAGATGAGTCGCTGTTGATCGACGGGC 106057 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGAC-GGCGCCGACAGTGTCAGCGTGGTCGAC 94959 | |||||||||||| ||||||| ||||| | | | | ||| || ||| | | Sbjct 106058 ACACCTTCTTTGTCGGCAATTTTTTGTTTGACTTGAGAC-AAAGTTTCCGCGGAGCTGGT 106116 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| ||||| || || | ||||| ||||| || ||||| Sbjct 106117 TTCGATTGTGATCGTTTTGCCCGTTAATGTTTTGACAAATATTTGCAT 106164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447394146894240