Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ismenius_20[genbank_20GCA_5F001485965.1_202015-12-16] 160,084 sequences; 259,837,422 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq11297 544 1e-149 >seq11297 Length=12984 Score = 544 bits (602), Expect = 1e-149 Identities = 1109/1624 (68%), Gaps = 45/1624 (3%) Strand=Plus/Minus Query 61830 TTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGAT 61889 |||||||| | ||||| | || || ||||| | | | ||| ||||| || |||| | Sbjct 12755 TTATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGT 12696 Query 61890 AGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGG 61949 |||||||||| ||||||| || | |||| ||| ||||| || ||| ||||| Sbjct 12695 AGTACATTCCTGTTTTTAATCCCATTTTCCAAGCGTGGAAATGAATCGACGTAAGTTTTC 12636 Query 61950 AATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCC 62009 ||| | || | || | ||| || || | ||||||||||||||| || || ||||| | Sbjct 12635 CATAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGACTTTGATCTATAAAAGCTCCTC 12576 Query 62010 TGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACT 62068 | || || ||||| | ||| || || ||| ||| ||||| | ||||| || || | Sbjct 12575 TATCAGCTGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAAT 12516 Query 62069 CGCTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATGGATCCACCATCTGCCATAATC 62125 | |||| | |||| |||| ||| | |||| | || |||||| | ||||| Sbjct 12515 CTCTTATT-TCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATA 12457 Query 62126 CTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGA 62185 ||| || || || |||| ||| || | | || ||| | | || ||||| | Sbjct 12456 AGATTTTTCATATCTTCATCCCACAAATCAGCCCGAGTCAAATCAGTCAGAAGATGATGG 12397 Query 62186 TTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGT 62245 || ||||| ||||||||||||| || ||||| | ||||||||| ||| | ||| Sbjct 12396 TTCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAAGGGT 12337 Query 62246 TCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 62305 || | ||| ||| | || || | |||||| ||||| || |||||||||||||| || | | Sbjct 12336 TCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGAGCTATC 12277 Query 62306 AATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCC 62363 |||| | ||| | | ||| ||||| || || || ||||| || |||| | || Sbjct 12276 AATAGAGAATTGCGCAAACC--ATGTTTTGCTATCTTTTCTTTAAGGACAGCCCAGTCCC 12219 Query 62364 AAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTAC 62422 |||| || | || || || ||||| | || || | || Sbjct 12218 AAAGGTCTGTAGGAGTTTTGTCCCACATATCATACTGGAGGATACCTTGGCTTGCTGGAC 12159 Query 62423 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 62482 ||| ||||||| ||| | ||||| || ||||||| ||||||||| || |||||| Sbjct 12158 TC-CCTTGATATGTACTGTACGCACCTTCTTTTTCAGCTAATTCACAACTAGCTTCTAAT 12100 Query 62483 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCA 62542 ||||| |||||||| ||||| || || | | ||| ||| | |||| | || || Sbjct 12099 GCACCATAATAAATTGTTTCAAATATTTGTTGATTGAGAAGTATTGCTTTCTCACTTTCG 12040 Query 62543 AATGGATAATTTAAGAGA-ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGG 62601 | | ||| | | | | | |||||| ||||| | || |||||||||||||| ||||| Sbjct 12039 TAAG-ATATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATACCAATAGG 11981 Query 62602 TCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 62661 |||||||||| |||| || ||| ||||| || | ||||||| |||||| ||| |||| Sbjct 11980 TCTATGTCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAATTAACATCAATAAC 11921 Query 62662 TTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA 62718 ||| || | |||| | ||||| ||||| | || || | ||| ||||| ||| Sbjct 11920 TTTGTTTAAATTTTGAGTTACAAT--CTTTGTG-ATTTCTTTTAATTTTTTAAAATTAAA 11864 Query 62719 TCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTC 62778 || || | ||||||||||| | ||| | || || || || || || || || || Sbjct 11863 TCTGTTATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTC 11804 Query 62779 ATTAGCATCCGCA---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCC 62835 || | || | | ||||| | | ||||||||||||||| ||||| || || || || Sbjct 11803 AT---CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCC 11747 Query 62836 TAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACC 62895 | ||||| ||||||||||||| ||||||| ||||||||||| | ||| |||| ||||| Sbjct 11746 AAGATTTTTTTGATTACTCTTTCTGTTACAAGCATCCTTATACAACATGTATGGTGTACC 11687 Query 62896 AGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTT 62955 ||| || | || | ||||||||| | ||||| | || |||| | | | | ||| Sbjct 11686 AGTCTCCACTTGGGCTTCTATAATTGACTTCCATAACTCTTGAGCTCTGACTT--GTTTT 11629 Query 62956 GTATCTCTTTTCTCTT--TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACA 63013 || || ||| |||| || ||| | ||| | | ||| || || ||||| || || Sbjct 11628 ATAAATCGTTTTTCTTCTTCATATTTGGCATATAGTTCTTCAAATTCCTCTCCA-AAGCA 11570 Query 63014 TTGTCC-AGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC-- 63070 | | || |||||||| |||| |||||||| | ||| || |||||||| Sbjct 11569 GTCAGCGAGGCCAGGACAATCATGAGGACACATGAGACTCCAAACT---TCATCCTTTTC 11513 Query 63071 -ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 63129 |||| ||||||||| ||||| || ||||| | ||| ||| || ||||| | ||| Sbjct 11512 TACTCTTTTCATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCAT 11453 Query 63130 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63189 ||| || || ||||| ||||| || | ||| | ||| | | ||||| | |||||| || Sbjct 11452 TTCTTCCTTACCTGTGTTCTTCTTTAAATCCAAGAATTCAAATATATCCGCATGCCAAGG 11393 Query 63190 TTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 63249 || || || || || | | || || ||||||||||| || ||||||| ||||| || Sbjct 11392 CTCTAAATAAATTGCAAATGCGCCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGC 11333 Query 63250 GGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGA 63309 ||| || ||||| |||||||||||||| | | |||||| || ||||| || || | Sbjct 11332 GGTATTGTTATACACTCTCAACATTGGCACTAGACCATTTGAGACCCCATTAGTGCCAGC 11273 Query 63310 GATATAGCTTCCACTG-GCACGAAT---ATTACTAATTGATAGACCTATTCCCCCTGCCA 63365 || || || ||| || | || || || || || |||||| || || || Sbjct 11272 TATGTAAGAACC-CTGAGCTCTGATGCAATGTGTA--TG-TAAACCTATGCCACCAGCAG 11217 Query 63366 TTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCA 63425 |||||| |||||||| ||| ||||||| |||||| | || || || || |||||||| Sbjct 11216 ATTTAGAAATTAATGCACATTGTTTTAAAGTATCAAAAATACCTTCAATGCTATCATCTT 11157 Query 63426 TCAT 63429 |||| Sbjct 11156 TCAT 11153 Score = 102 bits (112), Expect = 1e-16 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 63610 CTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 63669 ||| |||||||| |||||||| || ||| ||||||||||||| ||||||||||||||||| Sbjct 10640 CTTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTGAAACCAAAATAGTTGTA 10581 Query 63670 TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTT 63720 | ||| |||| || |||| ||| | |||| | ||| ||||| | ||| Sbjct 10580 TTTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTGTTTTT 10530 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 63821 TTTTTTGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCC 63880 || || || ||||| |||| ||| |||| |||||||| || || | |||||||||||| Sbjct 9881 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATGGCATAATCG 9822 Query 63881 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 63940 ||||| | ||| || ||| ||||||||||| || || ||| | || | || | ||| Sbjct 9821 GGATGATCTGTGGTCTTAGTAGCTGCTATTTCAGCAGCTAGATTATCAAGCTCAGCAGTT 9762 Query 63941 GTTACACCATTATATATTCC 63960 ||||||||| |||||| || Sbjct 9761 GTTACACCAGAATATATGCC 9742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632364070686400