Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ismenius_20[genbank_20GCA_5F001485965.1_202015-12-16] 160,084 sequences; 259,837,422 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq20 212 5e-50 seq350 152 4e-32 seq32113 111 1e-19 seq16183 89.7 4e-13 seq8075 87.8 1e-12 >seq20 Length=148542 Score = 212 bits (234), Expect = 5e-50 Identities = 234/312 (75%), Gaps = 0/312 (0%) Strand=Plus/Minus Query 86305 TGTGTTCCTCaaaaaactaaaaaCTAACAAATTTACAGATGACATTGACTATTTAATTTT 86364 ||||||| | || ||||| ||||| ||||| || || || |||||||||||| || || Sbjct 87142 TGTGTTCTTGAAGAAACTCAAAACCAACAAGTTCACCGACACCATTGACTATTTGATCTT 87083 Query 86365 GCCAAATTTCACTTTATGGGACCACAATTTTTTAGTGTTTCTCAACAAAAAATTTAATAG 86424 |||| | || | || ||||||||||||||| | | |||||||||||| || || Sbjct 87082 GCCACACTTTATATTGTGGGACCACAATTTTGTCATTTTTCTCAACAAAGCGTTCAACTC 87023 Query 86425 CAAAAAAGAATGCGGTCTAGTGAATATTTGGGGCGCGATGCAAAAAATATCTCTAACTCA 86484 |||| | || | | | ||| | |||| | |||| |||||||||| || || || Sbjct 87022 CAAACACGACAACAGCTTGGTGGACATTTCGAGCGCCCTGCAAAAAATTAAACTCACACA 86963 Query 86485 AGGCGTCATCAAAGATTTGATACAGAACAAAAACGGATACGCGGGTCAATATTTGTATTC 86544 ||| |||||||||| | |||| ||||||||| ||||| | ||||||||||||||| Sbjct 86962 CGGCATCATCAAAGACCAATTGCAGAGCAAAAACGGTTACGCCGTTCAATATTTGTATTC 86903 Query 86545 GACATTTCTGAACACGGCCAGCTTCTATGCTAACGTCCAATGTTTTAATGGTATAAACGA 86604 ||| ||||| ||||| ||| ||||||||| ||||| || ||||| || || | ||||| Sbjct 86902 GACGTTTCTCAACACCGCCTCCTTCTATGCCAACGTGCAGTGTTTGAACGGCGTCAACGA 86843 Query 86605 AATAATTCCGCC 86616 ||| ||||||| Sbjct 86842 AATCGTTCCGCC 86831 Score = 125 bits (138), Expect = 6e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 220 ACTCTATTCAAAGAGATTCGTCGTATTCATCCAGACACTATGAAGCTAGTGTGCAACTGG 279 ||| | |||||||||||||| | | | || ||||| |||||||| ||| ||||||| Sbjct 136713 ACTTTGTTCAAAGAGATTCGCAATGTGAAGCCGGACACGATGAAGCTGGTGCTCAACTGG 136772 Query 280 AGCGGTAAAGAGTTTCTCCGTGAAACTTGGACTCGCTTCATCAGCGAAGAG-TTTCCCAT 338 ||||| ||||||||| | |||||||||||||| || ||| || | | | || |||||||| Sbjct 136773 AGCGGCAAAGAGTTTTTGCGTGAAACTTGGACCCGTTTCGTC-GAGGACAGTTTTCCCAT 136831 Query 339 CACCACTGACCAAGAAATTATGGACTTGTGGTTTGAGCTCACACTGAGACCCATGCAGCC 398 || ||||| || | |||||| ||| | | | ||| |||||||||| | ||| Sbjct 136832 TGTCAACGACCAGGAGGTGATGGACGTGTTTCTCGTGATCAACCTGAGACCCACTCGGCC 136891 Query 399 TAACCGTTGCTAC 411 |||||||| ||| Sbjct 136892 CAACCGTTGTTAC 136904 Score = 89.7 bits (98), Expect = 4e-13 Identities = 146/208 (70%), Gaps = 7/208 (3%) Strand=Plus/Minus Query 106529 CGTCTACTATGTAATCTTTGGCGTACACATCTCTCACGTACATCACATCATCCTTCCGAT 106588 |||| || | |||||| |||||||||| || | | | ||| |||||| |||| | | Sbjct 96920 CGTC-ACCACGTAATCGCTGGCGTACACGTCGCGCGCAAACAACACATCGTCCTGCTTGT 96862 Query 106589 CGTACACCAGCTGTATGGCTCGATTGACAGTTTTTTCGTCATCATAATTACCGTACAAGA 106648 |||||||||| || ||||| ||||||| || || | || || |||||||| | Sbjct 96861 CGTACACCAGTTGGATGGCACGATTGATGTGCTTCTCCTGGTCGACGTTGCCGTACAAAA 96802 Query 106649 ACATTCTCCTCATATTCTTGTCTCGAGGATATTGTTTATCaaaaaaaTTATGCATCAAAA 106708 |||| | | | | ||| | | | ||| |||| || ||||||| ||| ||||| Sbjct 96801 ACATACGCTTGCAA----TGTTTTGCG--TATAGTTTGTCGTAAAAATTGTGCGCCAAAA 96748 Query 106709 TATTGTTATTCATCATAATGTTAGGAAA 106736 | ||||| ||||| | |||||| ||||| Sbjct 96747 TGTTGTTGTTCATGAGAATGTTGGGAAA 96720 Score = 87.8 bits (96), Expect = 1e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 105960 GCATAGAAAAAATTTCTTTCCCGCCACAGTCATTTCCCCGTGaaaaaaaCTATCTACAAA 106019 ||| |||||||||||||| |||||||| ||||| || ||||| |||||||| || | | Sbjct 97541 GCACAGAAAAAATTTCTTGCCCGCCACCGTCATCTCACCGTGGAAAAAACTGTCAATGTA 97482 Query 106020 CTTCACATAGTCCATAGTGTGCTTGAGCATATCCTGTTGTAGATTTTCATTGATCACTCG 106079 ||| ||| | || | ||| ||||||| ||||| | | || ||| | | || Sbjct 97481 CTTGACAAAATCGCGTTTCTGCATGAGCATCTCCTGGCGCATGGCGTCGTTGGTGATGCG 97422 Query 106080 CAACACTTCGGCGCCTATGCGATACTTTAGC 106110 || ||||||| ||| ||||| ||||| ||| Sbjct 97421 CACCACTTCGTTGCCGATGCGGTACTTGAGC 97391 Score = 86.0 bits (94), Expect = 5e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 44812 ATTTGGGAAAGGGGTTACGAAGACAATTACACGTTGGGTCAGCAGATTAGCATCAGAATG 44871 || ||||| | || ||||| |||||||||||| | || || ||| | ||||| | || Sbjct 101856 ATGTGGGAGCGAGGCTACGAGGACAATTACACGCTCGGCCAACAGTTGAGCATTCGCATC 101915 Query 44872 ACCACGAATCTCATACAAAGTGGGTTGGATTTTAAGCATCAA 44913 ||||| || || ||||| || |||||||||||||| |||||| Sbjct 101916 ACCACCAAACTGATACAGAGCGGGTTGGATTTTAAACATCAA 101957 >seq350 Length=11499 Score = 152 bits (168), Expect = 4e-32 Identities = 94/98 (96%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 3459 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 3400 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 |||||||||||||||||||||||| ||||||| ||||| Sbjct 3399 AAAACTGATATATTGAGCCATTCGCGGTATCGCCTTAA 3362 Score = 152 bits (168), Expect = 4e-32 Identities = 94/98 (96%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 3459 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 3400 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 |||||||||||||||||||||||| ||||||| ||||| Sbjct 3399 AAAACTGATATATTGAGCCATTCGCGGTATCGCCTTAA 3362 Score = 82.4 bits (90), Expect = 6e-11 Identities = 50/52 (96%), Gaps = 1/52 (2%) Strand=Plus/Minus Query 115342 TCCGTCGATTGGTTT-GATCTAATAAAAGCACTCATCCCATCACTGGTTAGA 115392 ||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 3521 TCCGTCGATTGGTTTTGATCTAATAAAAGCACTCATCCCATCACTGGTCAGA 3470 Score = 82.4 bits (90), Expect = 6e-11 Identities = 50/52 (96%), Gaps = 1/52 (2%) Strand=Plus/Minus Query 114145 TCCGTCGATTGGTTT-GATCTAATAAAAGCACTCATCCCATCACTGGTTAGA 114195 ||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 3521 TCCGTCGATTGGTTTTGATCTAATAAAAGCACTCATCCCATCACTGGTCAGA 3470 >seq32113 Length=13445 Score = 111 bits (122), Expect = 1e-19 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| |||| ||| ||||| || |||||||| || |||||| || |||||||| || | Sbjct 7107 ACCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGA 7166 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || | || ||||||||||| || ||||| || || ||||||||||| || Sbjct 7167 CAGGGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGG 7226 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACA---CTATCAGTAGATTC 34076 | || |||||||| | | |||| |||| | | | || | |||| || ||| Sbjct 7227 GATGCCCTCTTTGT-CTTGGATTTTAGCTT--TCACATTTTCAATTGTGTCAGAAGCTTC 7283 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| | || ||||||||||| || |||||||| |||||||||||||| Sbjct 7284 AACTTCTAAAGTAATTGTTTTTCCAGTGAGTGTTTTAACAAAGATTTGCAT 7334 >seq16183 Length=3749 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||||||||| || |||||||| | || ||||||||||| ||||| || | Sbjct 397 CCACCTCTCAGCCGTAGTACCAGATGCAAAGTAGATTCCTTCTGAATATTGTAGTCAGAT 456 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | | || | || || | ||||| || ||||| || || | |||||||| || Sbjct 457 AGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGA 516 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACA---CTATCAGTAGATTCG 34077 | || |||||| ||| |||||| ||||| | | || |||||| || ||| Sbjct 517 ATGCCCTCTTTATCCTGAATTTTCGCCTTAA---CATTTTCAATTGTATCAGAAGCTTCC 573 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 ||| | || || ||||| || || |||||||| ||||| ||||||||| Sbjct 574 ACTTCCAATGTGATAGTTTTGCCAGTCAGTGTTTTTACAAATATTTGCATT 624 >seq8075 Length=22473 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 37827 ACGCACGATCTCTTGTGGAACGCGGCTCAAATTCAGCTTGTGCGCGAGGGTAAGATGCAT 37886 || |||||| ||| |||||| | |||||||| || || ||| ||||| ||||||||| Sbjct 13339 ACACACGATGACTTATGGAACTCAGCTCAAATACAACTGGTGAAAGAGGGCAAGATGCAT 13280 Query 37887 CAGTATATGCGCATGTATTGGTGCAAGAAAATTTTGGAATGGTCTGATGATGCTCAGAC- 37945 | | |||||||| ||||||||||| ||||| |||||| | | | || | || Sbjct 13279 GGTTTCCTACGCATGTACTGGTGCAAGAAGATTTTAGAATGGACCCA-GTCGCCCGAACA 13221 Query 37946 CGCGCTCAACTACGCCATTTATCTCAATGATAAGTACAGCTTGGACGGGCGTGATCCCAA 38005 || | || | || ||||| | |||||| | ||||| | ||||| | ||||| || Sbjct 13220 GGCTTTGAAGTTTGCTATTTACTTGAATGATCATTACAGTGTTGACGGCAGAGATCCTAA 13161 Query 38006 CGGTTACGTCGG 38017 ||||| || || Sbjct 13160 TGGTTATGTTGG 13149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396287721827368