Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ismenius_20[genbank_20GCA_5F001485965.1_202015-12-16] 160,084 sequences; 259,837,422 total letters Query= NC_009810.1 Length=38867 Score E Sequences producing significant alignments: (Bits) Value seq1539 147 5e-31 seq1464 109 1e-19 seq3145 104 6e-18 seq52331 86.0 2e-12 >seq1539 Length=57711 Score = 147 bits (162), Expect = 5e-31 Identities = 231/326 (71%), Gaps = 6/326 (2%) Strand=Plus/Minus Query 35453 GGAGAGCAAATAATGATGAACCGTGTAGTACTT--GTAGGACGATTAACAAAAGACCCTG 35510 |||||| || |||||| || |||| |||| |||||||| ||||| ||||| || | Sbjct 16185 GGAGAGATAAAAATGATCAATAATGTA--ACTTTAGTAGGACGGTTAACCAAAGATCCCG 16128 Query 35511 ATTTACGATATACGCCAGCTGGTGCAGCAGTTGCGACTTTTACTTTAGCTGTAAATCGCC 35570 ||||||| ||||| || ||| ||||||| || |||||||| ||||| || |||||| Sbjct 16127 ATTTACGTTATACCGCAAGTGGCACAGCAGTGGCCACTTTTACCTTAGCCGTTAATCGCA 16068 Query 35571 CATTTAAAAATACACAAGGAGAACAAGAAGCAGATTTCATTAATTGTGTTGTTTGGCGTA 35630 |||| ||| | | || | | |||||| ||||| || |||||||| ||||||||| Sbjct 16067 ATTTTACGAATCAAAACGGCAATCGAGAAGCTGATTTTATCAATTGTGTGATTTGGCGTA 16008 Query 35631 AACCAGCGGAAAACGCAGCTAATTTCTTGAAAAAAGGAAGCATGGCAGGCGTTGATGGAC 35690 |||||||||||| |||| || ||||| || || | ||||| | |||| Sbjct 16007 AACCAGCGGAAACGATGGCTACATTAGCTAAAAAGGGTAGTTTAATCGGCGTCGTCGGAC 15948 Query 35691 GTGTTCAAACTCGTAATTATGAGGA-CAGCGACGGTAAACGCGTTTTCGTTACTGAGGTA 35749 | ||||||| || | |||||| | |||| | || | || || | ||| ||||| || Sbjct 15947 GGATTCAAACGCGGACTTATGACAACCAGC-AAGGACAGCGTGTCTACGTGACTGAAGTT 15889 Query 35750 GTTGCTGAAACAGTTCAATTCTTAGA 35775 || || || | | ||| | ||||| Sbjct 15888 GTGGCCGATAATTTCCAACTATTAGA 15863 >seq1464 Length=66918 Score = 109 bits (120), Expect = 1e-19 Identities = 208/301 (69%), Gaps = 4/301 (1%) Strand=Plus/Plus Query 35477 GTAGTACTTGTAGGACGATTAACAAAAGACCCTGATTTACGATATACGCCAGCTGGTGCA 35536 || ||||| || ||||| | |||||||| || |||||||||||||| || ||| | Sbjct 17866 GTTGTACTAGTTGGACGTCTGACAAAAGATCCAGATTTACGATATACATCAAGTGGCACT 17925 Query 35537 GCAGTTGCGACTTTTACTTTAGCTGTAAATCGCCCATTTAAAAATACACAA-GGAGAACA 35595 || || || || || ||||||||||| ||||| | || | | || || || | | Sbjct 17926 GCTGTAGCAACGTTCACTTTAGCTGTCAATCG-TAACTTCACGAGCCAAAACGGCAACCG 17984 Query 35596 AGAAGCAGATTTCATTAATTGTGTTGTTTGGCGTAAACCAGCGGAAAACGCAGCTAATTT 35655 || || ||||| ||||||||||| ||||||| ||| |||| |||| ||| || | Sbjct 17985 TGAGGCGGATTTTATTAATTGTGTGATTTGGCGAAAATCAGCAGAAACACTAGCAAACTA 18044 Query 35656 CTTGAAAAAAGGAAGCATGGCAGGCGTTGATGGACGTGTTCAAACTCGTAATTATGAGGA 35715 | ||||||| | ||| || ||| ||| ||||||| ||| |||||| | Sbjct 18045 TGCACATAAAGGAACTCTTTTAGGTGTAACTGGTCGTATTCAAACGCGTTCTTATGATAA 18104 Query 35716 -CAGCGACGGTAAACGCGTTTTCGTTACTGAGGTAGTTGCTGAAACAGTTCAATTCTTAG 35774 || | | || |||| || | ||| || || ||||||||||||| | ||||| || | Sbjct 18105 TCAAC-AAGGACAACGTGTGTACGTAACAGAAGTAGTTGCTGAAAACTTCCAATTATTGG 18163 Query 35775 A 35775 | Sbjct 18164 A 18164 >seq3145 Length=45091 Score = 104 bits (114), Expect = 6e-18 Identities = 224/327 (69%), Gaps = 11/327 (3%) Strand=Plus/Plus Query 35460 AAATAATGATGAACCGTGTAGTACTT--GTAGGACGATTAACAAAAGACCCTGATTTACG 35517 ||||| |||| ||| ||| |||| |||||||| ||||| |||||||||||||| || Sbjct 1790 AAATA-TGATTAACAATGTG--ACTTTAGTAGGACGTTTAACGAAAGACCCTGATTTGCG 1846 Query 35518 ATATACGCCAGCTGGTGCAGCAGTTGCGACTTTTACTTTAGCTGTAAATCGCCCATTTAA 35577 |||||| | ||| || || || || ||||| | || || ||||| |||| Sbjct 1847 CTATACGAGCGGTGGAAAAGGTGTGGCTACATTTACCCTTGCAGTTAATCGAAACTTTAC 1906 Query 35578 AAATACACAAGGAGAACAAGAAGCAGATTTCATTAATTGTGTTGTTTGGCGTAAACCAGC 35637 ||| | ||||| | |||||||| ||| || | ||||| ||||| | |||||||| Sbjct 1907 CAATCAAGCCGGAGAGCGTGAAGCAGACTTCGTTCAATGTGTGATTTGGAGGAAACCAGC 1966 Query 35638 GGAAAACGCAGCTAAT--TTCTTGAAAAAAGGAAGCATGGCAGGCGTTGATGGACGTGTT 35695 ||||| |||||| | || | | |||| | || |||||| ||||| || Sbjct 1967 GGAAACACTGGCTAATTATGCTCG--CAGGGGAACCTTGCTAGGCGTGACCGGACGAATT 2024 Query 35696 CAAACTCGTAATTATGAGGA-CAGCGACGGTAAACGCGTTTTCGTTACTGAGGTAGTTGC 35754 ||||| ||| |||||| | |||| | || |||| |||| || || || || || || Sbjct 2025 CAAACACGTTCTTATGACAATCAGC-AAGGGCAACGTGTTTATGTAACGGAAGTTGTAGC 2083 Query 35755 TGAAACAGTTCAATTCTTAGAGCCTAA 35781 || | ||||||| || || |||| Sbjct 2084 AGAGAATTTTCAATTGTTGGAATCTAA 2110 >seq52331 Length=217 Score = 86.0 bits (94), Expect = 2e-12 Identities = 137/195 (70%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 35462 ATAATGATGAACCGTGTAGTACTT--GTAGGACGATTAACAAAAGACCCTGATTTACGAT 35519 || ||||| ||| |||| |||| |||||||| |||||||||||||||||||| || | Sbjct 194 ATTATGATTAACAATGTA--ACTTTGGTAGGACGTTTAACAAAAGACCCTGATTTGCGCT 137 Query 35520 ATACGCCAGCTGGTGCAGCAGTTGCGACTTTTACTTTAGCTGTAAATCGCCCATTTAAAA 35579 ||||| || ||| || || || |||||| ||||| || ||||| ||||| | Sbjct 136 ATACGTCAAGTGGCAAGGCGGTAGCAGGTTTTACATTAGCAGTCAATCGAAGATTTACGA 77 Query 35580 ATACACAAGGAGAACAAGAAGCAGATTTCATTAATTGTGTTGTTTGGCGTAAACCAGCGG 35639 | |||| | | || || || | || | ||||| ||||| | ||| |||||| Sbjct 76 ACCAGGCAGGACAGCGTGAGGCGGACTATATCCAATGTGTCATTTGGGGGAAATCAGCGG 17 Query 35640 AAAACGCAGCTAATT 35654 ||| | ||| |||| Sbjct 16 AAACCTTAGCAAATT 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124016595737832