Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ismenius_20[genbank_20GCA_5F001485965.1_202015-12-16] 160,084 sequences; 259,837,422 total letters Query= NC_009813.1 Length=48172 Score E Sequences producing significant alignments: (Bits) Value seq14859 269 8e-68 seq40707 80.6 8e-11 >seq14859 Length=68005 Score = 269 bits (298), Expect = 8e-68 Identities = 794/1214 (65%), Gaps = 36/1214 (3%) Strand=Plus/Plus Query 46038 GAATATCaaaaattaaaaaaaTCAATTGAAGAATTTGGCTATATTGACCCACTGATTTGG 46097 ||||| | || |||||| | || ||| ||||||||||| | |||| |||| |||| Sbjct 26067 GAATACGAGAAGTTAAAACAGTCCATTTTAGAATTTGGCTTTGTTGATCCACCTATTTTT 26126 Query 46098 AATGAAAGAACTGGTAATTTAGTCGGTGGCCATCAGCGTTAT---------AAAATTTTA 46148 || | |||| || ||| | |||||||| ||||| ||| | ||| ||| Sbjct 26127 AACAAGCGAACAGGCAATCTCGTCGGTGGTCATCAACGTGTTGCTGTGGCTAAAGATTT- 26185 Query 46149 CTCGAGGGAAAACCGGAAAACTTAACTGTATCAGTAGTTAACCTAGATATAGATCAAGAG 46208 ||| | ||| | || ||||| ||||| | || |||| |||| Sbjct 26186 -----GGGCGTATGCGAAGAGATAGAGGTATCGGTAGTATATTTATCCCTAGAGAAAGAA 26240 Query 46209 AAAGCATTGAATATTGCGTTAAACAAGATAGAAGGTGGATGGAATACTGATAAATTAGGC 46268 ||||| | ||| | || | || || || ||| ||||| || ||||||||| Sbjct 26241 AAAGCGCTCAATGTGGCTCTCAATAAAATTTCTGGTCGATGGGATGAAGATAAATTATCA 26300 Query 46269 GAATTACTAAAAAGCATTAATGATGAAGAAATGCTAAATTTAACAGGATTCTCAGCACTT 46328 || ||| || || || || | || ||| ||| ||||| ||||| | | || Sbjct 26301 GAGTTATTACGAAATATGAAAAACGAGGAA---CTAGGGTTAACTGGATT-TAATCAAGA 26356 Query 46329 G-AAATAGATGAATTAATTAAAGAGTTCGAATTACCTCC-AGCTACTGTGGATAAAGTAA 46386 | |||||||||| ||| || | ||| | || | | | || | || ||||||| Sbjct 26357 GGAAATAGATGATTTACTTGGA-AGTATGGATGAGGTTGTAACTTTAGCTGAAAAAGTAA 26415 Query 46387 AAGAAAACCCGTTAGACTCGAATCTGTTCGAGTCTTTTTTGTTTCCGCCGTTTTCTTATT 46446 ||| ||||| | | || ||| | || || ||||| | ||||| || ||||||||| Sbjct 26416 AAGCCAACCCTGTCAATTCTAATTTATTTGATACTTTTCTATTTCCACCTTTTTCTTATC 26475 Query 46447 TGGATTCGAAAACAAGAAGATGGAGGGATAGGAAGGACCAATGGAAAAATTTAGGGATTA 46506 | ||| ||||||||| | ||| ||||| || | || |||||| | ||||||||| Sbjct 26476 TTGATACGAAAACAAAGCGTTGGTTAGATAGAAAAAAACAGTGGAAAGAACTAGGGATTA 26535 Query 46507 GAAGCGAGCTAGGGAGAGAAGGTAATCTCACGTTTGCATCTAGCTTACGGTCAGCAAGTT 46566 || || | || | | | || || ||| ||| | | | | | | | Sbjct 26536 AGAGTGAAATTGGTCGCGGTGAAAACCTAGTATTTAATAATAGTCTTCAGGCTCCTGGAT 26595 Query 46567 TGACAGGAACGAGTATTTTCGACCCCGTGCTTTGCGAATTGGCTTACAGATGGTTTACTC 46626 | || || || || || || || | || ||| | | || ||||||| || | Sbjct 26596 TAGAGGGTACATCAATCTTTGATCCGGTATTGTGTGAACTAGGATATCGATGGTTCACAC 26655 Query 46627 CTAAA----GAATCTGCCAAAATATACGATCCATTCGCCGGTGGTTCTGTTCGGGGTATT 46682 | ||| ||| | || || | ||||| || || ||||||||||| || || || Sbjct 26656 CAAAAACGGGAAGC----AATATTTTTGATCCGTTTGCTGGTGGTTCTGTACGTGGAATA 26711 Query 46683 GTAGCAAAAGTTCTTGGCCATGAATACACTGGAATTGATTTAAGAAAAGAACAAGTAGAA 46742 || ||||||||| | || || | || || || |||||||||||||| |||||| | ||| Sbjct 26712 GTTGCAAAAGTTTTAGGACACAACTATACAGGTATTGATTTAAGAAAGGAACAAATTGAA 26771 Query 46743 GCTAACCACATTAATGCTAAAGAAATCGGATTAGATGGCATTAATTGGATTACCGATAAT 46802 |||||| | ||||| ||||| || || ||||| | || ||||||| |||| | Sbjct 26772 GCTAACTATGCCAATGCGAAAGAGATTGGTTTAGAGGATATCCATTGGATATGCGATGAC 26831 Query 46803 AGCTTAAACGCGGATAAACATATTAAAGATAACTCGATGGACTTATTATTTACATGCCCA 46862 || ||||| ||||| ||||| ||||| | |||||| | || ||||| ||| Sbjct 26832 AGTTTAAATATTGATAATCATATAGAAGATGAGAGCCAAGACTTACTCTTCACATGTCCA 26891 Query 46863 CCTTATTTCGACTTAGAGGTATATTCAGATAATAAAGAAGACATTAGCAACATGGAATAC 46922 || ||| || |||||||| || ||| | || || ||| ||||| || ||| ||| Sbjct 26892 CCATATGCGGATTTAGAGGTCTACTCACAAGATGAAAGAGATATTAGTAATATGACTTAC 26951 Query 46923 GATGAATTTATTAAAGTGTATTCCGAGATATTAGATAAGGGT--GCGAATAAATTAAAAG 46980 || ||||| | || ||| | | || || | || ||| | | ||| | ||| Sbjct 26952 GAACAATTTGCAGATGTTTATAGCCAAATTTT--AAAACGGTCATCAAGGAAACTTAAAA 27009 Query 46981 ATAATCGGTTTGCTATTGTGGTTATTTCAGATGTACGAGATAAAGCTGGTTTTTATAGAG 47040 ||||||| |||||| || | |||||| ||||| ||||||||| ||||| ||||||| Sbjct 27010 ATAATCGTTTTGCTGTTATTACTATTTCTGATGTTCGAGATAAAAAAGGTTTCTATAGAG 27069 Query 47041 ATTTGACCGGTCTTACTAAGTCAATTTTTG-AGAAGAATGGTATTTACTTCTATAATGAC 47099 |||| || ||| | ||||| | || | |||||| || | ||| ||||||||| Sbjct 27070 ATTTAACTGGTTTGACTAAACGATCATTAGCCGAAGAA-GGAGTCCTCTTTTATAATGAC 27128 Query 47100 TTGATTTTGTTAAACTCACTAGGTTCAGGAGCATTAAGAGCTCGCAGAAATATGCGTAAC 47159 |||| | || || || |||||||| |||||| | ||| | | ||| ||| Sbjct 27129 ATGATCCTATTGAATACAGCAGGTTCAGCAGCATTGCGTGCTAGGTTATCGATGAATAAT 27188 Query 47160 AGGAAGTTAGTTCGGATACATCAGAATGTTTTAGTGTTTTACAAAGGAAATCCTGATGAG 47219 | ||| | ||||| || ||||| ||||| ||||| ||||| |||||||||||| | || Sbjct 27189 CGTAAGGTCGTTCGAATCCATCAAAATGTCTTAGTATTTTATAAAGGAAATCCTAAAGAT 27248 Query 47220 ATACAAGAACATTT 47233 || | ||||||| Sbjct 27249 ATTAATAAACATTT 27262 >seq40707 Length=6213 Score = 80.6 bits (88), Expect = 8e-11 Identities = 158/230 (69%), Gaps = 14/230 (6%) Strand=Plus/Minus Query 39188 GAGCAATTAGATTTGCTTGATTTCTTATGAAGAGAGAA------GCGCAAAACTATATTG 39241 ||||||||| |||||| ||||| |||||| | | | ||| | ||||| | Sbjct 5328 GAGCAATTAAGTTTGCTAGATTTTCTATGAAAAAAATACAAAATGCGAATGACTATGCTA 5269 Query 39242 ATAATAAATTAAAACCACCAAAAGCCTTTTTTGAATGGTGTTTCTCACAAATTCCAACCT 39301 | || | ||||| ||||||| || ||||||||||||| |||| ||||||| | Sbjct 5268 AAGATTGTCTTAAACCGCCAAAAGGATTCTTTGAATGGTGTTATCAACAATTTCCAACGT 5209 Query 39302 ATAAATGGTCCAACAAAAAAGAAACTATTCTAGCTTCTAATCGAAAA---AACTGCA-GT 39357 || |||| |||||| |||||| ||| | ||||| | | ||||| | |||| || Sbjct 5208 ATGTATGGAAAAACAAACGAGAAACGATTGTCGCTTCGACTAGAAAACATAGTTGCACGT 5149 Query 39358 GTTATTGAACAGAAGTTAAGAAAAAACTCTAGATTGACATTTTTTGGTAA 39407 | | ||| || ||| ||| || || ||||| |||||||||| ||| Sbjct 5148 ATGA--GAAACGA--TTAGCAAAGAATTCGAGATTAACATTTTTTGATAA 5103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 153735991636272