Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ismenius_20[genbank_20GCA_5F001485965.1_202015-12-16] 160,084 sequences; 259,837,422 total letters Query= NC_009815.1 Length=38124 Score E Sequences producing significant alignments: (Bits) Value seq2203 174 4e-39 seq1539 149 2e-31 seq1464 132 1e-26 seq3145 129 1e-25 seq7607 109 1e-19 seq14859 96.9 8e-16 >seq2203 Length=131112 Score = 174 bits (192), Expect = 4e-39 Identities = 244/336 (73%), Gaps = 6/336 (2%) Strand=Plus/Plus Query 940 TGCATTTAACCAAGAACAAGCCTTTCGCTTATTCATGGATGGCGATGGATTTGGATTGAT 999 ||| | ||||||||||||||||| | | || |||||| | || ||||| ||| || Sbjct 1518 TGCTTATAACCAAGAACAAGCCTACAGAATGTTTATGGATTGTGAAGGATTCGGACTG-- 1575 Query 1000 GCACATAT-TCGGTAATCT-TGCAGAAATGAAACACGACGAGCATGGGGATCATTTGCTT 1057 | |||||| | | | || ||| ||||| |||||| |||||||| |||||||| Sbjct 1576 GAACATATCTTTGCCAGCTGTGCTGAAATTCGACACGATGAGCATGGAGATCATTTATGG 1635 Query 1058 ATACATTCT-CCAAACGGTCCAAAGAAAATCTATTATAAAGGTGGCGGGAAAGTAAATAG 1116 || || ||| ||| | || |||| |||||||||||||| ||||| ||||||||| Sbjct 1636 AT-CAATCTACCAGAGGGAGAAAAGCGGATCTATTATAAAGGCGGCGGAAAAGTAAATGC 1694 Query 1117 CGTGGGTGCTATTACTGGTATGTCATTGGGTACTGTTACGTTTTTAGAAATCAATTTGCT 1176 || ||||| || |||||||||||||| || ||||| || ||||| ||| ||||| |||| Sbjct 1695 TGTCGGTGCCATCACTGGTATGTCATTTGGAACTGTCACTTTTTTGGAATTCAATCTGCT 1754 Query 1177 TCACAAAGATTTTATTGAAGAATGTTTTCGACGGACCTTTGCAGCGAAAAATAGATTTCA 1236 | |||||| |||| || || |||||| ||||| || | | | | | ||| Sbjct 1755 TAACAAAGCAGTTATAGATGAGGCTTTTCGTCGGACTAAAGCTTCTAGTTTTCGTTATCA 1814 Query 1237 TTTAGCTGAATTGAACCCACCTGCACCGAATCATCC 1272 | | |||||| ||| || || ||||| |||||||| Sbjct 1815 TCTCGCTGAACAGAATCCGCCAGCACCAAATCATCC 1850 >seq1539 Length=57711 Score = 149 bits (164), Expect = 2e-31 Identities = 229/322 (71%), Gaps = 6/322 (2%) Strand=Plus/Minus Query 34917 AATGATGAATCGTGTAGTACTT--GTAGGACGATTAACTAAAGACCCTGATTTACGTTAC 34974 |||||| ||| |||| |||| |||||||| ||||| ||||| || ||||||||||| Sbjct 16174 AATGATCAATAATGTA--ACTTTAGTAGGACGGTTAACCAAAGATCCCGATTTACGTTAT 16117 Query 34975 ACTCCAGCCGGCGCGGCTGTTGCGACTTTTACGCTAGCAGTAAATCGTATGTTCACTAAT 35034 || || ||| | || || || |||||||| |||| || ||||| | || || ||| Sbjct 16116 ACCGCAAGTGGCACAGCAGTGGCCACTTTTACCTTAGCCGTTAATCGCAATTTTACGAAT 16057 Query 35035 CAAAACGGAGAACGAGAAGCAGATTTCATTAATTGTGTTGTTTGGCGCAAACCAGCAGAA 35094 |||||||| | |||||||| ||||| || |||||||| ||||||| |||||||| ||| Sbjct 16056 CAAAACGGCAATCGAGAAGCTGATTTTATCAATTGTGTGATTTGGCGTAAACCAGCGGAA 15997 Query 35095 AACGTTGCTAATTTCTTGAAGAAAGGAAGCATGGCGGGCGTTGATGGACGTGTTCAAACT 35154 | | |||| || || || || || | ||||| | ||||| ||||||| Sbjct 15996 ACGATGGCTACATTAGCTAAAAAGGGTAGTTTAATCGGCGTCGTCGGACGGATTCAAACG 15937 Query 35155 CGTAATTATGAGGATAACGACGGTAAACGTGTTTTCGTTACTGAGGTAGTTGCTGAATCA 35214 || | |||||| | | | || | ||||| | ||| ||||| || || || | || | Sbjct 15936 CGGACTTATGACAACCAGCAAGGACAGCGTGTCTACGTGACTGAAGTTGTGGCCG-ATAA 15878 Query 35215 GTT-CAATTCTTAGAACCTAAA 35235 || ||| | |||||| |||| Sbjct 15877 TTTCCAACTATTAGAAAGTAAA 15856 >seq1464 Length=66918 Score = 132 bits (146), Expect = 1e-26 Identities = 216/311 (69%), Gaps = 0/311 (0%) Strand=Plus/Plus Query 34919 TGATGAATCGTGTAGTACTTGTAGGACGATTAACTAAAGACCCTGATTTACGTTACACTC 34978 |||| ||| || ||||| || ||||| | || ||||| || |||||||| || || Sbjct 17855 TGATTAATAACGTTGTACTAGTTGGACGTCTGACAAAAGATCCAGATTTACGATATACAT 17914 Query 34979 CAGCCGGCGCGGCTGTTGCGACTTTTACGCTAGCAGTAAATCGTATGTTCACTAATCAAA 35038 || ||| | ||||| || || || || |||| || ||||||| ||||| | |||| Sbjct 17915 CAAGTGGCACTGCTGTAGCAACGTTCACTTTAGCTGTCAATCGTAACTTCACGAGCCAAA 17974 Query 35039 ACGGAGAACGAGAAGCAGATTTCATTAATTGTGTTGTTTGGCGCAAACCAGCAGAAAACG 35098 |||| | || || || ||||| ||||||||||| ||||||| ||| ||||||||| Sbjct 17975 ACGGCAACCGTGAGGCGGATTTTATTAATTGTGTGATTTGGCGAAAATCAGCAGAAACAC 18034 Query 35099 TTGCTAATTTCTTGAAGAAAGGAAGCATGGCGGGCGTTGATGGACGTGTTCAAACTCGTA 35158 | || || | | ||||||| | || || ||| ||| ||||||| ||| Sbjct 18035 TAGCAAACTATGCACATAAAGGAACTCTTTTAGGTGTAACTGGTCGTATTCAAACGCGTT 18094 Query 35159 ATTATGAGGATAACGACGGTAAACGTGTTTTCGTTACTGAGGTAGTTGCTGAATCAGTTC 35218 |||||| || | | || ||||||| | ||| || || |||||||||||| | | Sbjct 18095 CTTATGATAATCAACAAGGACAACGTGTGTACGTAACAGAAGTAGTTGCTGAAAACTTCC 18154 Query 35219 AATTCTTAGAA 35229 |||| || ||| Sbjct 18155 AATTATTGGAA 18165 >seq3145 Length=45091 Score = 129 bits (142), Expect = 1e-25 Identities = 230/332 (69%), Gaps = 8/332 (2%) Strand=Plus/Plus Query 34907 GAGGAAAACGAATGATGAATCGTGTAGTACTT--GTAGGACGATTAACTAAAGACCCTGA 34964 |||||||| ||||| || ||| |||| |||||||| ||||| ||||||||||| Sbjct 1783 GAGGAAAAAATATGATTAACAATGTG--ACTTTAGTAGGACGTTTAACGAAAGACCCTGA 1840 Query 34965 TTTACGTTACACTCCAGCCGGCGCGGCTGTTGCGACTTTTACGCTAGCAGTAAATCGTAT 35024 ||| || || || | || | ||| || || ||||| || ||||| ||||| | Sbjct 1841 TTTGCGCTATACGAGCGGTGGAAAAGGTGTGGCTACATTTACCCTTGCAGTTAATCGAAA 1900 Query 35025 GTTCACTAATCAAAACGGAGAACGAGAAGCAGATTTCATTAATTGTGTTGTTTGGCGCAA 35084 || || |||||| |||||| || |||||||| ||| || | ||||| ||||| | || Sbjct 1901 CTTTACCAATCAAGCCGGAGAGCGTGAAGCAGACTTCGTTCAATGTGTGATTTGGAGGAA 1960 Query 35085 ACCAGCAGAAAACGTTGCTAAT--TTCTTGAAGAAAGGAAGCATGGCGGGCGTTGATGGA 35142 |||||| |||| | |||||| | || | || |||| | || ||||| ||| Sbjct 1961 ACCAGCGGAAACACTGGCTAATTATGCTCGCAG--GGGAACCTTGCTAGGCGTGACCGGA 2018 Query 35143 CGTGTTCAAACTCGTAATTATGAGGATAACGACGGTAAACGTGTTTTCGTTACTGAGGTA 35202 || ||||||| ||| |||||| || | | || ||||||||| || || || || Sbjct 2019 CGAATTCAAACACGTTCTTATGACAATCAGCAAGGGCAACGTGTTTATGTAACGGAAGTT 2078 Query 35203 GTTGCTGAATCAGTTCAATTCTTAGAACCTAA 35234 || || || ||||||| || ||| |||| Sbjct 2079 GTAGCAGAGAATTTTCAATTGTTGGAATCTAA 2110 >seq7607 Length=81728 Score = 109 bits (120), Expect = 1e-19 Identities = 157/218 (72%), Gaps = 5/218 (2%) Strand=Plus/Minus Query 32076 AATATGGGAAGTTAGACCAGAGA-ACTTGGAAAGATGATATaaaaaaaGGATTTAGCGAA 32134 |||| || || ||||| | ||| || ||| ||| ||||||||| | || | || Sbjct 75977 AATACGGACAGCTAGACAA-AGATACCTGGCCAGAAGATATAAAACAGGGTATGTCAGAG 75919 Query 32135 TGTATGAGAGTTTTGAAACCGAACGGAACATTAATTTTCAAATGGAACGAAGACCAAATA 32194 |||||| | ||||| || || ||||||||||| |||||||||||||| || |||| || Sbjct 75918 TGTATGCGTGTTTTAAAGCCCAACGGAACATTGATTTTCAAATGGAATGAGAACCAGGTA 75859 Query 32195 AAGCTAAGCGAGATTTTAAAGATAATTGA---TTTTGAACCGCTTTTCGGTAATAAGCGT 32251 || || | || ||||||| |||||| || ||| | || || ||||| | Sbjct 75858 AAACTCAAAGATGTTTTAAAATCAATTGAACCATTCAGACCTTTGTTTGGAAATAAAAGG 75799 Query 32252 TCTAAAACGCACTGGCTAGTTTTTATGAAGGAGGAACA 32289 | | || |||||| |||||||||||||||||||||| Sbjct 75798 AGTCAGACACACTGGTTAGTTTTTATGAAGGAGGAACA 75761 >seq14859 Length=68005 Score = 96.9 bits (106), Expect = 8e-16 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 34907 GAGGAAAACGAATGATGAATCGTGTAGTACTTGTAGGACGATTAACTAAAGACCCTGATT 34966 ||||| | | ||||| ||| || ||| | || ||||| |||||||| ||||| || Sbjct 19967 GAGGATTAAGCATGATTAATAACGTTGTATTAGTGGGACGGTTAACTAAGGACCCAGACA 20026 Query 34967 TACGTTACACTCCAGCCGGCGCGGCTGTTGCGACTTTTACGCTAGCAGTAAATCGTATGT 35026 || | | |||| | || || | | || | |||||| ||||| || || |||| | Sbjct 20027 TAAGAAATACTCAACAAGGAACGACGATCGCTAGTTTTACACTAGCGGTCAACCGTAACT 20086 Query 35027 TCACTAATCAAAACGGAGAACGAGAAGCAGATTTCATTAATTGTGTTGTTTGGCGCAAAC 35086 | | | ||||| ||| | || ||||||||||| ||||||||||||| |||||| || Sbjct 20087 TTAAAGACCAAAATGGAAAGCGTGAAGCAGATTTTATTAATTGTGTTGCTTGGCGTAAGA 20146 Query 35087 CAGCAGAA 35094 |||| ||| Sbjct 20147 CAGCTGAA 20154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 121643515549488