Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ismenius_20[genbank_20GCA_5F001485965.1_202015-12-16] 160,084 sequences; 259,837,422 total letters Query= NC_012663.1 Length=60074 Score E Sequences producing significant alignments: (Bits) Value seq11345 116 1e-21 seq47150 93.3 2e-14 >seq11345 Length=29580 Score = 116 bits (128), Expect = 1e-21 Identities = 543/842 (64%), Gaps = 34/842 (4%) Strand=Plus/Plus Query 17852 TGCTGATGTTTATGTTAAACTAGAAAGCTTCAACCCTGGAGGTTCGGTCAAAGACCGTAT 17911 ||| ||||||| ||||||| | ||| |||||| || || || || ||||||||||| Sbjct 1783 TGCGGATGTTTTTGTTAAATTGGAATTCTTCAATCCAGGTGGAAGCGTGAAAGACCGTAT 1842 Query 17912 TGCTTTGAAAATGATTCAACAAGCACA-CAAGATTGGACAACTTAAA---GAAGA-ACAA 17966 ||| ||||| |||||| || ||||| | || ||| ||| | | ||| | || |||| Sbjct 1843 TGCCTTGAATATGATTGAAAAAGCAGAACATGAT-GGAATATTGAAACCGGGTGATACAA 1901 Query 17967 GCTATTGTAGAACCAACCTCTGGTAATACTGGAATCGGTTTAGCTATGGTTGGAGCAGCT 18026 | |||| ||||||| || || || ||||| || |||||||| ||||| || | ||| Sbjct 1902 TC-ATTG---AACCAACTTCAGGGAACACTGGTATTGGTTTAGCGATGGTCGGTGTAGCA 1957 Query 18027 CTTGGACATCCAGTTACTATTGTAATGCCAGAATCATTCTCTATGGAACGTAGACAAATT 18086 ||| ||| || | |||| ||||| ||| | | ||| || ||| | | | Sbjct 1958 AAAGGATATCATGTGAAACTTGTCATGCCTGAAACGATGAGTATCGAGCGTCGCTTATTG 2017 Query 18087 ATCCGTGCTTATGGTGCTAACTTAGTTTTAACACCTGCTAGTGAAGGAATGAAAGGTGCT 18146 || | || || || | || |||| || || | | ||||| || | ||| | Sbjct 2018 ATGAAGGGCTACGGAGCAGAACTAATTTTGACTCCAGGGACAGAAGGCATCAGTGGTTCA 2077 Query 18147 ATCGCTAAAGCCAAAGAAATTGCCAAAGATATTAACGGATTTATA-CCAATGCAATTTGA 18205 ||| |||| ||| | || |||| | | | |||| | || |||||||||| Sbjct 2078 ATCAAAGAAGCAAAACGTCTGGCTGAAGAAAATGG-GTATTTCTTGCCTCTGCAATTTGA 2136 Query 18206 GAACTTCTGGAATCCTACAGCTCATTTTGATAACACAGCTTTT---GAAATCATTGATGA 18262 ||| ||||| || |||| || || || || | |||||| | | Sbjct 2137 AAACCCAGCTAATCCATTAGTTCAT---GAAAAAACGACTGGTCCAGAAATCCAAGCGGC 2193 Query 18263 ACTTACTAAAAGTGGTAAACGTCCAGATATGTTTGTAGCAGGAGTTGGAACTGGTGGCAC 18322 || | | ||| || ||| |||||| |||||| | || |||||||| || Sbjct 2194 GTTTGGTGTGAATGG-----GTTG-GATGCGTTTGTCGCAGGAATCGGTACTGGTGGAAC 2247 Query 18323 TATTACTGGAGCAGGTCATTCACTCAAA--GAAGAATTTCCTAGCA-TTAAAATTGTTGG 18379 || || || || || || | | ||| || ||| | ||| |||| || ||||| Sbjct 2248 GATCACCGGTGCGGGACACGAATTAAAACGGATCAAT---CCAGCGCTTAAGATCGTTGG 2304 Query 18380 AGTTGAATCAGCAGAATCACCAGTACTTAGT-GGAGGAGAACCTGGACCACATAAGATTC 18438 ||||| |||| ||||| | || |||| ||| ||||||||| ||||| || || | Sbjct 2305 GATTGAACCAGCCGAATCTGCTGTT-TTAGAAGGAAAAGAACCTGGTCCACACAAAATCC 2363 Query 18439 AAGGTATTTCAGCAGGTTTTATTCCACAAATTCTTGATATGGATATCATTGATGAAATCA 18498 |||| || | |||| ||| |||| | | | |||| | || | |||| || || Sbjct 2364 AAGGCATCGGAACAGGGTTTGTTCCGGATACGTTAGATACGAATGTATATGATCAAGTCT 2423 Query 18499 AACAAGTATCGAGTGAACAAGCTCTTGAT-ACAGCTCGTAGTATGGCTTTGAATGAAGGT 18557 | |||||| ||||| ||||| | ||| |||||||| |||||| | |||||| Sbjct 2424 TATCAGTATCTAGTGAGCAAGCAAT-GATCACAGCTCGCCGTATGGGGCAAGAAGAAGGT 2482 Query 18558 ATCTTAGTTGGAATCAGTAGTGGAGCAGCTATCTCAGCAGCTTTTGATAAGGCTAAAGAA 18617 |||||||| || | | | ||||| || | ||| || || || ||||||||| Sbjct 2483 ATCTTAGTGGGTGTTTCTGGAGGAGCTGCAGTTGAAGCTGCACTTAATGTAGCTAAAGAA 2542 Query 18618 TTAGGCAAAGGTAAAACTATTGTAGTAATTGCACCAGATACTGGAGAACGCTATTTATCA 18677 |||| || |||| || | | ||| || |||| |||||||| ||||| || Sbjct 2543 CTAGGTGCTGGAAAAAAAGTTCTTGCGATTATTCCTGATAACGGAGAACGTTATTTGTCT 2602 Query 18678 AC 18679 || Sbjct 2603 AC 2604 >seq47150 Length=641 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 59729 ATGCCGACTACAGGACTTGAACCTGTGACCTTCTGATTACAAATCAGACGCTCTACCAAC 59788 |||||| ||| |||||||||||| |||| ||||||||||||||||| ||||||||||| Sbjct 372 ATGCCGGCTAAAGGACTTGAACCCTCGACCCTCTGATTACAAATCAGATGCTCTACCAAC 313 Query 59789 TGAGCTAAATCGGC 59802 |||||||| |||| Sbjct 312 TGAGCTAAGCCGGC 299 Score = 84.2 bits (92), Expect = 8e-12 Identities = 61/70 (87%), Gaps = 2/70 (3%) Strand=Plus/Minus Query 59737 TACAGGACTTGAACCTGTGACCTTCTGATTACAAATCAGACGCTCTACCAACTGAGCTAA 59796 |||||| || |||||||||||| |||||||| || ||||| ||||||||||||||||||| Sbjct 176 TACAGGGCTCGAACCTGTGACCCTCTGATTAAAAGTCAGATGCTCTACCAACTGAGCTAA 117 Query 59797 ATCGGCTAAT 59806 ||||| || Sbjct 116 --CGGCTCAT 109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191749989485088