Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ismenius_20[genbank_20GCA_5F001485965.1_202015-12-16] 160,084 sequences; 259,837,422 total letters Query= NC_013645.1 Length=34882 Score E Sequences producing significant alignments: (Bits) Value seq1464 147 5e-31 seq1539 113 1e-20 seq3145 105 1e-18 seq28223 89.7 1e-13 >seq1464 Length=66918 Score = 147 bits (162), Expect = 5e-31 Identities = 219/308 (71%), Gaps = 6/308 (2%) Strand=Plus/Plus Query 29167 CTAGTTGGTCGCATGACCAAAGATGCAGAACTA--AAATACA-CTGGGAACAATATCGCA 29223 |||||||| || |||| |||||| |||| || | ||||| | | || | || Sbjct 17872 CTAGTTGGACGTCTGACAAAAGATCCAGATTTACGATATACATCAAGTGGCACT---GCT 17928 Query 29224 GTAGCATCTTTCAGCCTTGCGGTTAACCGTAACTTTAAGGATGCTAATGGTGAGCGTGAA 29283 |||||| | |||| | || || || |||||||| | | || || | ||||| Sbjct 17929 GTAGCAACGTTCACTTTAGCTGTCAATCGTAACTTCACGAGCCAAAACGGCAACCGTGAG 17988 Query 29284 ACTGACTTTATCAATTGCGTTATCTGGAGACAGCAAGCTGAAAACTTGGCTAACTGGGCT 29343 | || ||||| ||||| || || ||| || | ||| |||| | || |||| || Sbjct 17989 GCGGATTTTATTAATTGTGTGATTTGGCGAAAATCAGCAGAAACACTAGCAAACTATGCA 18048 Query 29344 AAGAAAGGAGCATTGATTGGTATTACTGGACGTATTCAGACTCGTAGCTATGAAAATCAA 29403 | |||||| | | | ||| | ||||| |||||||| || ||| ||||| |||||| Sbjct 18049 CATAAAGGAACTCTTTTAGGTGTAACTGGTCGTATTCAAACGCGTTCTTATGATAATCAA 18108 Query 29404 CAAGGTCAACGTGTTTACGTGACTGAAGTTGTTGCTGAAAACTTCCAGATGTTGGAAAGT 29463 ||||| |||||||| ||||| || ||||| ||||||||||||||||| | ||||||||| Sbjct 18109 CAAGGACAACGTGTGTACGTAACAGAAGTAGTTGCTGAAAACTTCCAATTATTGGAAAGT 18168 Query 29464 CGTGCAGC 29471 |||||||| Sbjct 18169 CGTGCAGC 18176 >seq1539 Length=57711 Score = 113 bits (124), Expect = 1e-20 Identities = 176/252 (70%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 29221 GCAGTAGCATCTTTCAGCCTTGCGGTTAACCGTAACTTTAAGGATGCTAATGGTGAGCGT 29280 ||||| || |||| | | | || ||||| || || |||| | || || || | || Sbjct 16101 GCAGTGGCCACTTTTACCTTAGCCGTTAATCGCAATTTTACGAATCAAAACGGCAATCGA 16042 Query 29281 GAAACTGACTTTATCAATTGCGTTATCTGGAGACAGCAAGCTGAAAACTTGGCTAACTGG 29340 ||| |||| ||||||||||| || || ||| | | | ||| |||| |||||| | Sbjct 16041 GAAGCTGATTTTATCAATTGTGTGATTTGGCGTAAACCAGCGGAAACGATGGCTACATTA 15982 Query 29341 GCTAAGAAAGGAGCATTGATTGGTATTACTGGACGTATTCAGACTCGTAGCTATGAAAAT 29400 ||||| || || || || || | ||||| ||||| || || | ||||| || Sbjct 15981 GCTAAAAAGGGTAGTTTAATCGGCGTCGTCGGACGGATTCAAACGCGGACTTATGACAAC 15922 Query 29401 CAACAAGGTCAACGTGTTTACGTGACTGAAGTTGTTGCTGAAAACTTCCAGATGTTGGAA 29460 || ||||| || ||||| ||||||||||||||||| || || || ||||| | || ||| Sbjct 15921 CAGCAAGGACAGCGTGTCTACGTGACTGAAGTTGTGGCCGATAATTTCCAACTATTAGAA 15862 Query 29461 AGTCGTGCAGCG 29472 ||| |||||| Sbjct 15861 AGTAAAGCAGCG 15850 >seq3145 Length=45091 Score = 105 bits (116), Expect = 1e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 29238 CCTTGCGGTTAACCGTAACTTTAAGGATGCTAATGGTGAGCGTGAAACTGACTTTATCAA 29297 |||||| ||||| || ||||||| || || ||||||||| | ||||| | | Sbjct 1883 CCTTGCAGTTAATCGAAACTTTACCAATCAAGCCGGAGAGCGTGAAGCAGACTTCGTTCA 1942 Query 29298 TTGCGTTATCTGGAGACAGCAAGCTGAAAACTTGGCTAACTGGGCTAAGAAAGGAGCATT 29357 || || || ||||| | | ||| |||| ||||||| | ||| | ||| | || Sbjct 1943 ATGTGTGATTTGGAGGAAACCAGCGGAAACACTGGCTAATTATGCTCGCAGGGGAACCTT 2002 Query 29358 GATTGGTATTACTGGACGTATTCAGACTCGTAGCTATGAAAATCAACAAGGTCAACGTGT 29417 | | || | || ||||| ||||| || ||| ||||| ||||| ||||| |||||||| Sbjct 2003 GCTAGGCGTGACCGGACGAATTCAAACACGTTCTTATGACAATCAGCAAGGGCAACGTGT 2062 Query 29418 TTACGTGACTGAAGTTGTTGCTGAAAACTTCCAGATGTTGGAA 29460 ||| || || |||||||| || || || || || |||||||| Sbjct 2063 TTATGTAACGGAAGTTGTAGCAGAGAATTTTCAATTGTTGGAA 2105 >seq28223 Length=7146 Score = 89.7 bits (98), Expect = 1e-13 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 25515 TGTCTGATAATCAAAAATACTATTATATGAGGCTCAAACAAGACTTCTTTGAGACGGAAG 25574 || ||||||| | |||||| ||| | | || ||| | | || ||||| | || | Sbjct 188 TGGCTGATAACAAGCGATACTACTATTTAAAACTAAAAGAGAATTTTTTTGATAGTGACG 247 Query 25575 AAATGATAATACTTGAGTCTATGCAAGACGGCTATTTGTATAGCAACATCTTGTTGAAAC 25634 ||||||| | ||||| ||||| ||| |||||| | ||| ||||| | | |||| Sbjct 248 AAATGATTCTTCTTGAAAGTATGCCAGATGGCTATATATATTCTAACATTCTCCTCAAAC 307 Query 25635 TATATTTGAGAAGTTTAAAGCGTGACGGTAAATTGATGTTTAACGACACAATCCCAT 25691 | ||||| ||||| | |||| ||| || || ||||||||||| |||| ||| |||| Sbjct 308 TCTATTTACGAAGTCTGAAGCATGAAGGCAAGTTGATGTTTAATGACAGAATTCCAT 364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 111288837257952