Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ismenius_20[genbank_20GCA_5F001485965.1_202015-12-16] 160,084 sequences; 259,837,422 total letters Query= NC_013646.1 Length=38764 Score E Sequences producing significant alignments: (Bits) Value seq14859 316 5e-82 seq7607 215 1e-51 seq1820 107 5e-19 seq64495 87.8 4e-13 >seq14859 Length=68005 Score = 316 bits (350), Expect = 5e-82 Identities = 500/720 (69%), Gaps = 3/720 (0%) Strand=Plus/Plus Query 16952 AGAAAACAAAACTCAACCATTTATATGAAAGCGAGGTGGTGT-TAATGGATGGCTAGAAA 17010 |||||||||||||||||| | || ||| |||||||||||| || || ||||| ||||| Sbjct 28664 AGAAAACAAAACTCAACC--TAATCAGAATGCGAGGTGGTGTATATTGAATGGCAAGAAA 28721 Query 17011 AAGAGATCCACGTCGTGACCAGGCTAAAGAAACTTGGTTAAAGTCAAACGGTAAAAAGGT 17070 | | |||||| | ||||| | || ||| | |||||| | || || || ||||| Sbjct 28722 ACGTGATCCAAGACGTGATGAAGCCAAAAGGATTTGGTTGGAATCCAAGGGAGAAAAGCA 28781 Query 17071 TCTTAAAGAATTAGCTAATGAATTAAATGTTTCAGATTCCCAAATAAGAAAATGGAAATC 17130 | || || | || | |||||||||||||||||||| ||| | |||||||||||||| Sbjct 28782 ATTAAAGGACATTGCAACAGAATTAAATGTTTCAGATTCACAAGTTAGAAAATGGAAATC 28841 Query 17131 GATAGATAAATGGGCTGATGAATTAAAAGGTAATGTTACCAATTCNNNNNNNNNNNNNNN 17190 |||||||||||| ||| |||| |||||||||||||||| | Sbjct 28842 TATAGATAAATGGAGCGATAAATTGAAAGGTAATGTTACCATTGGCAAAAGTAACGTTAC 28901 Query 17191 NNNTAAAGGTGGAGCGCCGCCTGGAAACAAAAATGCCGTAGGTAACAAAGGGAATAAAAG 17250 | ||||||| || || ||| || | || || || || ||||| |||| | Sbjct 28902 CAATCAAGGTGGCGCTCCTTTTGGTAATCAGAACGCAAAGGGGAATAAAGGCAATAGCCG 28961 Query 17251 TGCCTCGCCACCAAAAAGAAATAAGAATGCGGTAAAAACAGGTGAATATGAGACAATATT 17310 ||||| || ||| | | || ||||| || | ||||| || || ||||| || ||||| Sbjct 28962 AGCCTCACCGCCAGTAGGGAACAAGAACGCTTTGAAAACTGGCGAGTATGAAACCATATT 29021 Query 17311 TGCTGACTTACTATCTGACGAAGAAAAGGACATCTATTCTAAACTGAATGATGATCCttt 17370 | || | || || ||||| |||||||||||||||| ||||| ||||||||| Sbjct 29022 TTACGAAACATTAAGCGATGAAGAGAAGGACATCTATTCTAGTTTGAATAATGATCCTTC 29081 Query 17371 ttttGTTTTGGAGGAAGAAATAAGAATCCTAAAGATTCGTCAATATAGAATGCTTAAACG 17430 |||||||||| || ||||| | | ||||||| | || | ||||| | ||| | Sbjct 29082 TTTTGTTTTGTCTGAGGAAATTCGTTTGTTAAAGATAAGACAGTTGCGAATGATGAAAAG 29141 Query 17431 CATAAAAAATGCAGAGGCTGGCTTAAATGATGAAGAAGTTGAACGTTTGCAACAGCTTCG 17490 ||| | || || |||||||| ||||| ||||||||| | |||||| |||||||| | | Sbjct 29142 AATACAGAAAGCCGAGGCTGGTTTAAACGATGAAGAAATCGAACGTCTGCAACAGTTAAG 29201 Query 17491 GAAAGTTAAAGAGCCATCGGCAATTGATGGGAAAATGGTTACTGTCAAAAGAGAAGTTTT 17550 ||| | ||| ||| | || | || | || | | ||||| |||| ||| | Sbjct 29202 AAAAATCAAAACGCCGATTGAAAAAAACGGTAGAAAGTTAGAAATCAAACGAGAGGTTAT 29261 Query 17551 GAAAGATGTACAAATAACTCGTAAAACATTTAGAAAGTTAGATGACATTTTAGCTATAGA 17610 | ||||||| ||| | | | |||| | | | || | ||||||||| | | || || Sbjct 29262 GCAAGATGTTCAAGTTAGCAGAAAAAAACATCGCAAAATTGATGACATTCTTTCAATTGA 29321 Query 17611 AGATGCGTTGACTCGCGTTAGCAATCAACTAGTCAAAGCGATTAAGCAACAAAAAGAACT 17670 |||| | || ||||| |||||||||| ||| ||||| ||||||||| || ||||| Sbjct 29322 AGATTCATTAACTCGGATTAGCAATCAGTTAGCTAAAGCCATTAAGCAAATGAATGAACT 29381 Score = 134 bits (148), Expect = 3e-27 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 36266 ATGATACTACCAGACAAGTATTACAAAATTATCAAATGGGGAGTACTTACGGTGCTTCCT 36325 ||||| || |||| || ||||| ||||||| |||||| |||||||||||| | ||| Sbjct 48201 ATGATTTTATCAGATAAATATTATCAAATTATTAAATGGACAGTACTTACGGTATTACCT 48260 Query 36326 GCGGGATCTGTTTTAGTAGCTACGTTAGGTAAAGCTTATGGGTGGCAACAAACAGATACG 36385 || | || || ||||| || || |||| ||||| ||||| ||| | |||||||| | Sbjct 48261 GCAGTGTCGGTATTAGTTGCAACACTAGGCAAAGCATATGGTTGGGGAGGAACAGATATG 48320 Query 36386 GCAGTGTTGACTATTAACGCTTTATCAGCATTTTTAGGAGTTGTAACAGGCGTGTCAGCA 36445 |||| ||||||| || || || | | |||||||| || |||| || ||||| ||| Sbjct 48321 ACAGTTCTGACTATCAATGCAGTAGCGACGTTTTTAGGTGTAATAACTGGTGTGTCTGCA 48380 Query 36446 TATAACTTAAAA 36457 |||||||||||| Sbjct 48381 TATAACTTAAAA 48392 >seq7607 Length=81728 Score = 215 bits (238), Expect = 1e-51 Identities = 265/357 (74%), Gaps = 4/357 (1%) Strand=Plus/Minus Query 13876 ATaaaaaaaGCCAGATTGCTCCGGCTGTGAGTAATATTTTCGACATAGTTATTATACCAC 13935 |||||||||||| ||| |||||| ||| |||||| ||||| |||||||| ||| Sbjct 72531 ATAAAAAAAGCCGGATCGCTCCGACTGAT-GTAATAAACCCGACAAGTTTATTATATCAC 72473 Query 13936 AAAA-GGAGCGATTTCACTTGATTCAATTGCTAAAAGAAGTAGATTTTCGACAAACAAAA 13994 |||| |||||| ||| |||| || ||||| ||| ||| ||||| ||| | || |||| | Sbjct 72472 AAAAAGGAGCGGTTTGACTTAATGCAATTAATAAGAGATGTAGACTTTAGGCAGACAAGA 72413 Query 13995 GTGAATGCTAGAAATGTGTTGAAGAATTTTAGACGTTTAGAGCGAATAGCTGGTCGCTCT 14054 ||||| ||| |||||||||| || || |||| || || || || || ||||| || Sbjct 72412 TGTAATGCGAGAGATGTGTTGAAAAACTTCCGACGGTTGGAACGGATGGCAGGTCGTTCA 72353 Query 14055 TTGATAGATTTAAAATCACCAATTATTACAGATATGCCTAAAA-GCCAAAGTCATGGGAA 14113 |||||||| | || || || ||||| || || ||||||| |||||| || || || Sbjct 72352 TTGATAGACATTAAGTCGCCGATTATAACTGACATGCCTAGGTCGCCAAAA-CACGGCAA 72294 Query 14114 CAAATCAGAAGATGCGCTAGTACAATTAGCAGATGCAGAAGCAGAAAGAGATGCAATTTT 14173 |||| ||||||||||||| | ||| || || |||||||||||||||||| ||||| Sbjct 72293 CAAAACAGAAGATGCGCTTATTCAAATAATGGACCTAGAAGCAGAAAGAGATGCGATTTT 72234 Query 14174 ATCTGCACTTATGGCTTTGAGTTTGACTAGTAGACAAATTCTGCACTACAGTTTTTG 14230 | || || ||| ||||||| | | ||| | ||||| || | || |||||||| Sbjct 72233 AGTAGCCCTGATGAGTTTGAGTCTTATCAGTCGTCAAATACTCTATTATAGTTTTTG 72177 >seq1820 Length=163924 Score = 107 bits (118), Expect = 5e-19 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 14151 GAAGCAGAAAGAGATGCAATTTTATCTGCACTTATGGCTTTGAGTTTGACTAGTAGACAA 14210 ||||||||||| ||||||| ||| ||| | |||| ||||||| | || | | || Sbjct 6449 GAAGCAGAAAGGAATGCAATCTTAAATGCTTTGATGGTTTTGAGTCTAACGAATCGAATG 6508 Query 14211 ATTCTGCACTACAGTTTTTGTGTGCAGGATCATTACTCTAATTACAAGATTGCTAGAGAA 14270 || || | || || || ||| | || || || ||||| |||||| | ||| Sbjct 6509 ATCCTTTATTATTCTTATTTTGTTCCTGAAAGTTTTTCGAATTATAAGATTAGTCTTGAA 6568 Query 14271 GTTGGATATTCTGAAAGAAGTATTCAACGCATGAAATCAGAAGCTTTGATTGAATTCGCG 14330 | || ||||| ||||||| ||||| | | ||| ||||||| |||||||||||||| Sbjct 6569 ATCGGTTATTCCGAAAGAACGATTCAGAGAAAAAAAGCAGAAGCATTGATTGAATTCGCT 6628 Query 14331 GAAGCTTACCGAAATGGCAAAATAATTGCATATAAATAATTT 14372 ||||| || | ||| ||| | ||||| |||||||||||| Sbjct 6629 GAAGCATATAAGACTGGAAAACTGATTGCGTATAAATAATTT 6670 >seq64495 Length=424 Score = 87.8 bits (96), Expect = 4e-13 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 37849 GGACCATTAGCTCAGTTGGTTAGAGCCAACCGCTCATAACGGTTAGGTCATAGGTTCGAG 37908 ||||| |||||||||||||||||||| || ||||||||| || |||| |||||||||| Sbjct 311 GGACCTTTAGCTCAGTTGGTTAGAGCAGACGGCTCATAACCGTCCGGTCGTAGGTTCGAG 370 Query 37909 TCCTGTATGGTCCATA 37924 |||| | |||||||| Sbjct 371 TCCTACAAGGTCCATA 386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123687622306608