Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ismenius_20[genbank_20GCA_5F001485965.1_202015-12-16] 160,084 sequences; 259,837,422 total letters Query= NC_015253.1 Length=127065 Score E Sequences producing significant alignments: (Bits) Value seq2938 596 1e-165 seq9304 168 5e-37 seq5076 156 3e-33 >seq2938 Length=77489 Score = 596 bits (660), Expect = 1e-165 Identities = 711/955 (74%), Gaps = 26/955 (3%) Strand=Plus/Plus Query 123550 TTCAAGAGTAAAAAGAACCCAGTTCAAAGTTATACTACTAAACGTACAAAGACTAATATT 123609 ||||| || ||||| || |||||||||||||| || || || | |||| || | | Sbjct 76225 TTCAAAAGCAAAAAAAATCCAGTTCAAAGTTACACCACCAACAAT-CAAAATGGAACAGT 76283 Query 123610 GCTATTG-TTGATAAGAAATTG----AAGTTACCTAAATTGGGACTTATTAAGTTTTCAC 123664 ||| ||||| | ||||| ||||| ||||||||| | | ||||| | Sbjct 76284 TAGTTTGATTGATCATAAATTCGTCAAAGTT-CCTAAATTGA-AGTCATTAATT------ 76335 Query 123665 AAAGTAAAG-TTCTTAAAGGAC------GTATTATCAAT---GCTACTATTTCACGTAGA 123714 ||| | ||| ||| || | ||| | || ||||| || || ||||| || Sbjct 76336 AAAATCAAGCTTCATAGAAGACCGAAAGGAATGATCAAATCAGCGACCATTTCTCGCCAT 76395 Query 123715 CCAAGTGGTAAATACTTTGTTTCATTGCTATGTGAAGAAGAAATATATGAACTACCTAAA 123774 ||||||||||||||| | |||| ||| | ||| |||||||||| | ||||||||| || Sbjct 76396 TCAAGTGGTAAATACTATATTTCGTTGTTGTGTAAAGAAGAAATTTGCGAACTACCTCAA 76455 Query 123775 GTAAATTCTTCAATAGGTATTGACTTAGGTATTGCTGATTTTGCTATCCTTTCGGATGGA 123834 ||||| | || || |||||| | || || |||||||||| || |||| ||| Sbjct 76456 ACGAATTCCGCTATTGGGATTGACCTTGGGATCACTGATTTTGCCATTTTTTCAACTGGT 76515 Query 123835 CAAAAAATTAACAATAATAAGTTTACTTCTAAAATGGAGCAGAAACTCAAACGTGAACAG 123894 ||||| ||| | || ||||| ||||| || ||||||| ||||||| ||||||||||| Sbjct 76516 CAAAAGATTGATAACAATAAATTTACCTCAAAAATGGCAAAGAAACTTAAACGTGAACAA 76575 Query 123895 CGTAAGTTATCAAGACGTGCATTAGTTGCCAAAAAGAATGGTATTCAA-CTATTTGAAGC 123953 ||||| || ||||||||||| ||| | || ||| ||| || ||||| || |||||||| Sbjct 76576 CGTAAATTGTCAAGACGTGCGTTATTAGCTAAACAGAGAGG-GTTCAATCTGTTTGAAGC 76634 Query 123954 CAGTAACTATCAAAAACAAAAATGTAAAGTCGCAAGACTTCATGAAAAAGTAATGAATCA 124013 | || ||||||||||||||| | |||||| || | || |||||||||||||| || Sbjct 76635 GAAGAATTATCAAAAACAAAAACGGTTAGTCGCTCGATTACACGAAAAAGTAATGAACCA 76694 Query 124014 ACGTACTGATTTTCTCAATAAGTTGAGTACAGATATTATCAATAACCACGATATTATTTG 124073 ||| | ||||||||| ||| | ||||||||||| || ||||| || ||||||||||| || Sbjct 76695 ACGGAATGATTTTCTAAATCAATTGAGTACAGAAATGATCAAAAATCACGATATTATCTG 76754 Query 124074 TATTGAAAACTTAAATGTTAAAGGTATGTTGAAAAATCACAAATTATCTAAAAGTATTTC 124133 ||||||| |||| ||| |||||||||||| || || |||||| | |||| ||||| Sbjct 76755 TATTGAAGACTTGAATACCAAAGGTATGTTGCGTAACCATAAATTAGCAAAAAACATTTC 76814 Query 124134 TGATGTGTCTTGGTCTGAATTTGTATCTAAATTACAATACAAGGCTGATTGGTATGGTAA 124193 |||||||||||||||| ||||| ||| |||| ||||| ||||| ||||| ||| Sbjct 76815 TGATGTGTCTTGGTCTAGCTTTGTGAAAAAACTACAGTACAAAGCTGACTGGTACGGTCG 76874 Query 124194 AGAGATAGTTAAGATTGATAGATGGTTTCCATCAAGTCAAATTTGTTCTGAATGTGGAAA 124253 | || | ||| | ||| |||||||||||| |||||||| ||||| |||||||| | Sbjct 76875 GAAAATGATCAAGGTGGATCAATGGTTTCCATCTAGTCAAATCTGTTCGAAATGTGGACA 76934 Query 124254 TAATGATGGaaaaaaaGGCTTACACATTCGTGAATGGACTTGTAGTCATTGTAACGCTAA 124313 || || || || ||| | | | ||||| |||||||| || || |||| |||| | Sbjct 76935 GAAAGACGGCAAGAAATCCCTCGAAATTCGAGAATGGACGTGCCCTCTTTGTCACGCACA 76994 Query 124314 TCATGATAGAGATATTAATGCTAGTAAAAACATATTGACCGAAGGTCTAAGATTACAAGT 124373 ||||||| || |||| |||||||||| || || |||||||||| ||| | || || Sbjct 76995 TCATGATCGAAATATCAATGCTAGTATCAATATTCTGACCGAAGGCCTACGCATAAAATC 77054 Query 124374 GTTAGCTTAGATAAAATATAGAACCGCAGGGACTGCGGGGATAGCTTAGTAAATAAGAGA 124433 | | || |||||| ||| | ||||| ||| ||| ||| ||| |||| ||||| |||||| Sbjct 77055 GCTGACTGAGATAACATAAATAACCGTAGGAACTACGGAGATCGCTTGGTAAACAAGAGA 77114 Query 124434 AACCTCTGTGAGTAAAGAAATACGCTTGCAAGTATGCTCTGTTCCTAAGAATCTC 124488 |||| |||||||||||||||||| ||| |||||||||||| |||| ||||| ||| Sbjct 77115 AACCGCTGTGAGTAAAGAAATACACTTACAAGTATGCTCTATTCCCAAGAAGCTC 77169 >seq9304 Length=29499 Score = 168 bits (186), Expect = 5e-37 Identities = 384/568 (68%), Gaps = 11/568 (2%) Strand=Plus/Minus Query 86408 AGCCATTAACTGGAACGAGATTGAAGATAACTACGATAAACAGACTTGGGAGAAGTTAAA 86467 ||| || |||||||| || |||||||||| | |||||| |||||||||||| |||| Sbjct 5089 AGCGATAAACTGGAATGAAATTGAAGATATCATTGATAAATCGACTTGGGAGAAATTAA- 5031 Query 86468 CTCA-CAGTTTTGGACAGCAACACGAGTACCTGTATCTAACGACTTAGATGATTGGCGTA 86526 || | || |||||| || ||||| | ||| | || || |||||||| || ||||||| Sbjct 5030 CTGAGCAATTTTGGTTAGACACACGTATCCCTTTGTCAAATGACTTAGACGACTGGCGTA 4971 Query 86527 CACTAGACCCCGTGGCTAAGGACCTTTATGGTAAAGTATTCGGGGGTCTTACGTTGCTAG 86586 | || || | | || || |||| | ||||| || || | || || || | Sbjct 4970 CGCTTTCCCAATTAGAAAAAGATACAGTTGGTCACGTATTTGGTGGATTGACTTTACTTG 4911 Query 86587 ACACTTTACAATCACAAGATGGTATGTTATCA-TTACTAAATAATGAGACACAATCACCT 86645 | || | |||||| || || ||| |||| |||| || ||| | || | || Sbjct 4910 ATACCGTCCAATCAGAAAGCGGGATGG-ATCAATTACGTAAAGATGTC-CGCA--CGCCC 4855 Query 86646 CATATGCGAGCAGTGCTTAGCAATATGCTCTTTATGGAGGCGATTCACGCACAAAGCTAC 86705 ||| ||| || | | |||||| | ||||||||| | | || || |||| ||| Sbjct 4854 CATGAAGAAGCGGTATTGAACAATATCCAATTTATGGAGTCTGTCCATGCGAAAAGTTAC 4795 Query 86706 TCAACTATCTTTAGTACCTTGATGACACCACAAGAGATAGCAAATGTATTTGATTTTACA 86765 || | ||||| ||||| |||| || | |||| || | | | | ||||| | || Sbjct 4794 TCTTCGATCTTCAGTACATTGAATACGAAAAAAGAAATCGAAGAAATCTTTGAATGGACG 4735 Query 86766 CATACAAACGAGCACCTACAGAAAAAAGCCCATCTTATTAACGAGGTCTACCAAAACGGT 86825 |||| || | |||||||||||||| | | ||| || ||| ||||| |||||||| Sbjct 4734 AATACCAATCCTTATCTACAGAAAAAAGCGGAGCGTATCAATGAGATCTACAAAAACGGT 4675 Query 86826 ACA--GTACCTCAAAAGATGATTGCAAGTGTCTTCTTAGAATCCGGACTGTTCTACTCAG 86883 || || |||| | ||||| |||||||| |||||| || | || ||||||| Sbjct 4674 ACGCCGTTAGAGAAAAAA--ATTGCGAGTGTCTTTTTAGAAACCTTCTTATTTTACTCAG 4617 Query 86884 GGTTCTACACGCCTCTATATTACTTAGGTAATGGAAAGATGGCGAACGTGGCAGAGGTTA 86943 | ||||| || || || ||||| ||||| ||| || | || |||||||||||| | | Sbjct 4616 GATTCTATACACCACTTTATTATTTAGGAAATAATAAATTAGCCAACGTGGCAGAGATCA 4557 Query 86944 TCCGTTTGATTTTGAGAGACGAGTCGGT 86971 || ||||| | | ||||| || || Sbjct 4556 TCAAGTTGATCATTCGTGACGAATCTGT 4529 Score = 122 bits (134), Expect = 7e-23 Identities = 235/347 (68%), Gaps = 0/347 (0%) Strand=Plus/Minus Query 82970 GGTGCAGGAGCGGTATACCTAAACGTATTCCACCCAGATATTATTAACTTTTTAGCAACA 83029 ||||| || | || || ||||||| ||||||||||| || || | || | || || Sbjct 6582 GGTGCGGGTGTCGTTTATTTAAACGTCTTCCACCCAGACATCATGATGTTCCTTTCAGCA 6523 Query 83030 AAGAAAGAGAACGCAGATGAAAAAGTACGCATCAAGACATTGTCAATGGGCTTAATATTG 83089 || ||||| || ||||| ||||| | ||| | ||||| || ||| | || | || | Sbjct 6522 AAAAAAGAAAATGCAGACGAAAAGATTCGCGTGAAGACTTTATCACTTGGTGTGATCGTC 6463 Query 83090 CCTGATAAGTTTTACGAGCTAGTAGGAAACGATGACTATATGTACTTATTCAGCCCTTAC 83149 || ||||| || || || ||| | | || | | | ||||| ||||||| ||||| Sbjct 6462 CCAGATAAATTCTATGAATTAGCACGTAAAAACCAAGAAATGTATCTATTCAGTCCTTAT 6403 Query 83150 GATGTTGAAAGAGAGTATGGTAAGCCCTTCTCTTACATTAACATCACGGAAGAATACGAT 83209 ||| |||| ||| |||||| ||| || |||||| | | ||||| | ||||| || Sbjct 6402 AGTGTGGAAAAAGAATATGGTGTGCCATTTTCTTACGTAGATATCACTGCGGAATATGAC 6343 Query 83210 AACCTAGTAGAAAATAAGAGTATTACTAAGTCACGTATTAAGGCACGTCAATTAAACGAC 83269 || |||| | |||| | ||| ||| | || || || ||| | ||| | | Sbjct 6342 AATTTAGTCGCAAATCCAAATATCCGTAAACAAAAAATCAAAGCCCGTGATTTAGAAAAT 6283 Query 83270 GAGATATCTAAGCTACAGCAAGAAGCAGGCTATCCATATATCATTAA 83316 || || ||||| |||| ||||| | || ||||| |||||||| || Sbjct 6282 GAAATCTCTAAATTACAACAAGAGTCTGGTTATCCGTATATCATCAA 6236 Score = 105 bits (116), Expect = 5e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 87477 TACACAGAGTACCTCTACGATGAGATTGGTTGGACAGCAGATGTAAAAGCGTTTGTACGA 87536 |||||||| | | || ||| || |||||||| | ||| || ||| | || |||| Sbjct 4404 TACACAGAAGAATTATATGATCCAATCGGTTGGACGGAAGAAGTCAAAACATTCTTACGC 4345 Query 87537 TACAACCTAAATAAGGCACTAGCTAACTTAGGAATGGACGCTATCTACCCTGAGAGAGCC 87596 ||||| |||||| ||| | || ||||||||||| | | | |||||| | ||| Sbjct 4344 TACAATGCAAATAAAGCATTGATGAATCTAGGAATGGACCCACTATTCCCTGATACAGCA 4285 Query 87597 CAAGATGTTAACCCTATTGTAATGACTGGGCTATCTACCGAGTCAAGCAACCACGACTTT 87656 | ||||| ||||| || || |||| |||| | ||||| | |||| |||||||| || Sbjct 4284 AACGATGTCAACCCAATCGTGATGAATGGGATCTCTACTGGTACAAGTAACCACGATTTC 4225 Query 87657 TTCTCTCAAGTAGGTAAC 87674 ||||||||||| || ||| Sbjct 4224 TTCTCTCAAGTCGGAAAC 4207 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/198 (72%), Gaps = 3/198 (2%) Strand=Plus/Minus Query 85550 CAAGTATCCAACCGATTATTCA-ACGAGTAGAAGAACGACAAGAAAAGAAAACAGGGAAG 85608 |||||||||| ||||| | || | || | |||||||| ||||||||||||| ||||| Sbjct 5546 CAAGTATCCATCCGATCACTCGTATGA-TCGAAGAACGCCAAGAAAAGAAAATTGGGAAA 5488 Query 85609 ACTTACTACCCAGCACCTAAGTTATCAGATAGAACAATGCCGTACTATCGCTCAGCTTAC 85668 | || |||||||| ||| | |||||| || |||||| ||||| || || ||||| Sbjct 5487 ATCTATTACCCAGCGCCTTATTTATCAAATGAAACAATCCCGTATTACACTTCTGCTTAT 5428 Query 85669 GATATGAGCATGTTAGATATGATTGATGTTTACGCAGAGGCAACTAAGCATGTTGACCAA 85728 |||||| ||| | |||| ||| |||| || ||| || ||||| || ||| Sbjct 5427 GATATGGATATGCGTAAAGTGATCGATATTTATGCCACAGCACAAAAACATGTGGATCAA 5368 Query 85729 GGGATTTCTATGAGCGTT 85746 || || ||||| |||| Sbjct 5367 GGAATGAGTATGA-CGTT 5351 >seq5076 Length=17118 Score = 156 bits (172), Expect = 3e-33 Identities = 299/433 (69%), Gaps = 7/433 (2%) Strand=Plus/Plus Query 82949 AGTAA-CAAATTG--CAGAGAAATGGTGCAGGAGCGGTATACCTAAACGTATTCCACCCA 83005 ||||| ||| ||| ||| | ||||| ||||| | |||||| || ||||| || || | | Sbjct 9057 AGTAATCAACTTGGACAGCGTAATGGAGCAGGTGTGGTATATCTTAACGTTTTTCATCAA 9116 Query 83006 GATATTATTAACTTTTTAGCAACAAAGAAAGAGAACGCAGATGAAAAAGTACGCATCAAG 83065 |||||||| |||||| | ||||| ||||| || ||||||||||| |||| | || Sbjct 9117 GATATTATCTCATTTTTATCTACAAAAAAAGAAAATTCAGATGAAAAAATACGTGTAAAA 9176 Query 83066 ACATTGTCAATGGGCTTAATATTGCCTGATAAGTTTTACGAGCTAGTAGGAAACGATGAC 83125 || || || | || |||||| | || ||||| | ||| || ||| || || || | Sbjct 9177 ACTTTATCGCTTGGTTTAATAGTTCCAGATAAATATTATGAACTATTAAAAACAAATCAA 9236 Query 83126 TATATGTA-CTTATTCAGCCCTTACGATGTTGAAAGAGAGTATGGTAAGCCCTTCTCTTA 83184 ||||| ||| || | ||| | ||| ||||||||| ||||| || || || ||||| Sbjct 9237 CCAATGTATCTTTTTAATCCC-CAGGATATTGAAAGAGTATATGGGAAACCTTTTTCTTA 9295 Query 83185 CATTAACATCACGGAAGAATACGATAACCTAG-TAGAAAATAAGAGTATTACTAAGTCAC 83243 || | | || |||||||||||| || | | || | |||| || ||| | Sbjct 9296 TATAGATTTAACTTCAGAATACGATAAACTTGTTTCAATAAAAGA-CATCCAAAAGACGT 9354 Query 83244 GTATTAAGGCACGTCAATTAAACGACGAGATATCTAAGCTACAGCAAGAAGCAGGCTATC 83303 |||| |||||| ||||| | | || || || |||| |||||| |||| |||| Sbjct 9355 CTATTCTCGCACGTGAATTAGAACAGGAAATTTCACGTTTACAACAAGAATCAGGTTATC 9414 Query 83304 CATATATCATTAACGAAGACACAGTCAACCTAGCTAACGCAGGTGACGGTAAGGTGATTA 83363 ||||||| ||||| || || ||||| || |||| | | | |||||| | |||| Sbjct 9415 CATATATTATTAATATTGATACCGTCAATAGAGATAACCCTGTAAAAGGTAAGATAATTA 9474 Query 83364 TGAGCAACCTCTG 83376 |||| || || || Sbjct 9475 TGAGTAATCTTTG 9487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405690141622824