Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ismenius_20[genbank_20GCA_5F001485965.1_202015-12-16] 160,084 sequences; 259,837,422 total letters Query= NC_017976.1 Length=41164 Score E Sequences producing significant alignments: (Bits) Value seq2203 89.7 1e-13 >seq2203 Length=131112 Score = 89.7 bits (98), Expect = 1e-13 Identities = 497/777 (64%), Gaps = 29/777 (4%) Strand=Plus/Plus Query 1248 GCATACAACCAAGAACAGGCTTACCGTTTAATCATTGATGGAGATGGAACGGGACTCATG 1307 || || ||||||||||| || ||| | | | || ||| | || ||| ||||| Sbjct 1519 GCTTATAACCAAGAACAAGCCTACAGAATGTTTATGGATTGTGAAGGATTCGGACTGGAA 1578 Query 1308 CATATATTCGGCAACTTAGCAGAAATTAAGCATGATGAACACGGATCGCATCTAAAGATA 1367 ||||| || | || || || |||||| || ||||| || ||| ||| || ||| Sbjct 1579 CATATCTTTGCCAGCTGTGCTGAAATTCGACACGATGAGCATGGAGATCATTTATGGATC 1638 Query 1368 CATACTCCATTAGGTGAGAAGAAGGTCTATTATAAGGGCGGAGGAAAGAGCAATAGTGTA 1427 || ||| || || ||| | |||||||||| ||||| ||||| ||| ||| Sbjct 1639 AATCTACCAGAGGGAGAAAAGCGGATCTATTATAAAGGCGGCGGAAAAGTAAATGCTGTC 1698 Query 1428 GGCGCTATCACAGGTATGTCACTAGGCTCTGTCGTGTTCTGTGAGATTAACCTGCTTCAC 1487 || || ||||| ||||||||| | || ||||| || | || | || |||||| || Sbjct 1699 GGTGCCATCACTGGTATGTCATTTGGAACTGTCACTTTTTTGGAATTCAATCTGCTTAAC 1758 Query 1488 ATGAGCA-TGATACAGGAGTGTTTCCGTCGTACCTTTGCCGCTT-TAG--ACCGTTTCCA 1543 | |||| | ||| | ||| ||| ||||| || | |||| ||| |||| || Sbjct 1759 A-AAGCAGTTATAGATGAGGCTTTTCGTCGGAC---TAAAGCTTCTAGTTTTCGTTATCA 1814 Query 1544 TATGGCAGATTTAAACCCACCTGCTCCATCTCATCCAGTTAT-TAAAGAGGTATTCGATG 1602 | | || || || || || || ||| |||||| || ||| || | | Sbjct 1815 TCTCGCTGAACAGAATCCGCCAGCACCAAATCATCCGAACATAGAAACTCTTAAACCCTT 1874 Query 1603 TACAG-----GACACATT---GTGGACACACTGGACACCGAATGACAATCCTATACTAAC 1654 || || | | || || || ||| ||| | || |||||||| |||| Sbjct 1875 TATAGAAACTGGGTCTTTTAAGTTTCGTCATTGGCGACCACAAGATAATCCTATTTTAAC 1934 Query 1655 -CGATGAGCGTAAAGAGGATATTAAGAAAGCACTGATGAAGAATCC--TTACCTGTACAA 1711 | ||| | | || || ||| | | || | ||| ||| || || ||||| Sbjct 1935 GAAACAAGCTTTGAAAGAATGGGAAG--CGGAATG-TAAAGTCTCCGAGTATCTTTACAA 1991 Query 1712 GCGTGACTGGCTAGGACAACGCGTTATGCCTGAAGGACTTATTTACTCCATGTTCGATGT 1771 || || |||||||| | || || ||||||||||| | || || || ||||| | | Sbjct 1992 ACGAGATTGGCTAGGTGATCGTGTGATGCCTGAAGGTGTGATCTATTCAATGTTTAACGA 2051 Query 1772 AGATGATAATAAGTGGGAAATGGTA-CA-AGGTAAGCCCGTTGAAATGTTCTTTAGTGCC 1829 |||| | || || | || || | || || ||||| || ||| ||||||||||| Sbjct 2052 AGATACTCATCTGTCG--AAGGGAATCATCGGCAAGCCTGTAGAAGCATTCTTTAGTGCA 2109 Query 1830 GATGGAGGGCAGAGTGACGCTACATCCTGCTCCTGTAATATCGTTGTGCTACACGAGGGT 1889 || || || || ||||| || || |||| |||| ||| ||||| | || || Sbjct 2110 GACGGCGGACAAAGTGATGCAACTACCTGTTCCTTAAATCTCGTTACATGGAAAGACGGA 2169 Query 1890 AAGTACAAACTACTA-AGAGTAGCGAACTACTACCACAGTGGTTCTGATACAGGGCAGAC 1948 || || | || ||| | | || |||| |||||| |||||| | || || || || Sbjct 2170 AAATATTATCT-CTATCGGATGGCTAACTTCTACCATAGTGGTGCCGACACGGGTGTCAC 2228 Query 1949 CAAAGCAATGTCCGTCTACGCAAAAGAAATTAAACAATTTATAGAATGGTGTTATAA 2005 ||||| ||| | || || || ||||||| || |||| ||||||||||||||| Sbjct 2229 GAAAGCGATGAGTGAGTATGCCAAGGAAATTAGGCAGTTTAAAGAATGGTGTTATAA 2285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 131353022645808