Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ismenius_20[genbank_20GCA_5F001485965.1_202015-12-16] 160,084 sequences; 259,837,422 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq16183 145 1e-29 seq32113 136 6e-27 seq95541 127 3e-24 seq48995 95.1 2e-14 seq7617 91.5 2e-13 >seq16183 Length=3749 Score = 145 bits (160), Expect = 1e-29 Identities = 142/183 (78%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||||||| | |||||| ||||||| |||||||| ||||| ||||| |||| ||| Sbjct 624 AATGCAAATATTTGTAAAAACACTGACTGGCAAAACTATCACATTGGAAGTGGAAGCTTC 565 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| ||| || || ||||| || |||||||| ||||| || ||||| || Sbjct 564 TGATACAATTGAAAATGTTAAGGCGAAAATTCAGGATAAAGAGGGCATTCCCCCAGATCA 505 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||||| | |||| ||| || |||||||| |||||| | || |||| || || || Sbjct 504 GCAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACACTATCTGACTACAA 445 Query 156002 TAT 156004 ||| Sbjct 444 TAT 442 Score = 120 bits (132), Expect = 4e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | |||||| ||||||| ||||||||||| |||||||| |||| |||| Sbjct 167 ATGCAAATTTTTGTGAAAACACTGACTGGCAAAACTATTACCTTAGAAGTGGAAGCTTCT 108 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||| || || || || || || ||||||||||| || || || ||| Sbjct 107 GACACAATCGAAAATGTTAAGGCAAAGATTCAGGACAAAGAAGGCATTCCCCCTGATCAA 48 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 |||||| |||||| || || || || || |||||| Sbjct 47 CAAAGACTGATTTTCGCTGGAAAACAACTGGAAGAT 12 Score = 118 bits (130), Expect = 2e-21 Identities = 136/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | || ||||||||||| || ||||| || || ||||| || ||| Sbjct 852 AATGCAAATTTTCGTAAAGACATTGACTGGCAAGACTATCACTTTGGAAGTTGAGCCTTC 793 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| ||| || ||| ||||| || |||||||| || || || ||||| || Sbjct 792 TGATACAATTGAAAATGTTAAAGCGAAAATTCAGGATAAAGAGGGAATTCCCCCAGATCA 733 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||||| | |||| ||| || |||||||| |||||| | || |||| ||||| || Sbjct 732 GCAAAGACTTATTTTTGCTGGAAAGCAGCTAGAAGATGGACGCACACTATCTGATTACAA 673 Query 156002 TAT 156004 || Sbjct 672 CAT 670 Score = 113 bits (124), Expect = 7e-20 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||||||| | || ||| ||||||| || ||||| ||| | ||||| || || Sbjct 396 AATGCAAATATTTGTAAAGACACTGACTGGCAAGACTATCACACTGGAAGTTGAGCCCTC 337 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | || ||| || || ||||| |||||||| ||||| || |||||||| || Sbjct 336 TGACACAATCGAAAATGTTAAGGCCAAAATTCAAGATAAGGAAGGAATTCCTCCAGACCA 277 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 |||||| | |||| ||| || |||||||| |||||| Sbjct 276 ACAAAGGCTTATTTTTGCTGGAAAGCAGCTTGAAGAT 240 >seq32113 Length=13445 Score = 136 bits (150), Expect = 6e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | ||||||||||||||||| || ||||| | ||||| ||| ||| Sbjct 6878 ATGCAAATATTTGTCAAAACATTGACTGGAAAGACCATTACCCTGGAAGTAGAACCATCT 6819 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| ||||||||||||||| || ||||| || ||||| ||| Sbjct 6818 GACACAATTGAGAATGTCAAAGCTAAAATACAAGATAAGGAGGGCATCCCCCCAGACCAA 6759 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | | |||| ||| || ||||| | |||||| | ||||| || ||||| ||| Sbjct 6758 CAGCGCCTCATTTTTGCTGGAAAGCAATTGGAAGATGGTCGCACTTTGTCTGATTACAAT 6699 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || |||||| | || || || |||||| Sbjct 6698 ATTCAGAAAGAGTCAACCCTGCACTTAGTG 6669 Score = 127 bits (140), Expect = 3e-24 Identities = 156/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||||||| | ||||||||||| ||||| |||||||| |||| |||| Sbjct 7334 ATGCAAATCTTTGTTAAAACACTCACTGGAAAAACAATTACTTTAGAAGTTGAAGCTTCT 7275 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| |||||| |||||| ||||| ||||| ||||| || || || || Sbjct 7274 GACACAATTGAAAATGTGAAAGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGATCAG 7215 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | | || | ||| |||||||| | |||||| | || | || || || | Sbjct 7214 CAGCGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACCCTGTCTGACTACA-- 7157 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGT 156031 | ||||||| ||| | || |||||| |||| Sbjct 7156 ACATCCAAAAGGAGTCTACCCTTCATCTAGT 7126 Score = 122 bits (134), Expect = 1e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||||||| | |||||| | ||||||||||| || || |||||||| || || Sbjct 6651 AATGCAAATATTTGTCAAAACACTTACTGGAAAAACAATAACTTTAGAAGTTGAGCCATC 6592 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| ||| || ||| ||| || |||||||| ||||| || |||||||| || Sbjct 6591 AGACACCATTGAAAATGTTAAAGCTAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCA 6532 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||| | | || | || |||||||| || |||||| | | || | || || || || Sbjct 6531 ACAACGTCTTATCTTCGCTGGTAAGCAACTGGAAGATGGCCGCACCCTGTCTGACTACAA 6472 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGT 156031 ||| |||||| | || ||||| || || Sbjct 6471 TATCCAGAAAGAGTCCACCCTTCACTTGGT 6442 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || ||| |||| || |||||||||||||||||||| ||| || Sbjct 6422 ATGCAGATCTTTGTAAAGACACTGACAGGGAAAACTATTACATTAGAAGTTGAACCCTCA 6363 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||| || ||| || || ||||| ||||| || || || ||||| ||| Sbjct 6362 GACACTATTGAAAATGTTAAAGCCAAGATCCAAGACAAAGAGGGTATTCCCCCAGATCAA 6303 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | |||| || || |||||||| || ||| | | ||| | || || || ||| Sbjct 6302 CAACGTCTCATTTTCGCTGGCAAGCAGCTGGAGGATGGCCGTACTCTCTCTGACTACAAT 6243 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || |||||| | || | || || || ||| | ||| |||| ||| Sbjct 6242 ATTCAGAAAGAGTCCACTTTGCACTTGGTATTACGTTTACGAGGAGGT 6195 Score = 113 bits (124), Expect = 7e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| |||| || | || |||||||| || || ||||| || ||| || Sbjct 7563 AATGCAGATCTTTGTTAAGACTCTTACAGGAAAAACCATCACTTTAGAGGTAGAACCGTC 7504 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| ||| ||||| || || ||||| ||||| || || || ||||| || Sbjct 7503 CGACACTATCGAAAATGTGAAGGCAAAGATCCAAGACAAAGAGGGTATTCCCCCAGATCA 7444 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| || |||||| ||| || || || || |||||| | | || ||||| |||||||| Sbjct 7443 ACAGAGGCTGATTTTTGCTGGAAAACAACTGGAAGATGGCCGTACATTATCTGATTATAA 7384 Query 156002 TATATCCAAA-GAGGCGACGCTTCATTTAGTGTT 156034 ||| || ||| || | || || |||||||| || Sbjct 7383 TAT-TCAAAAGGAATCTACCCTACATTTAGTATT 7351 Score = 89.7 bits (98), Expect = 8e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || ||| | || || || ||||| || | || || || ||| Sbjct 7106 ATGCAAATATTTGTCAAGACACTAACAGGCAAGACTATAACTCTGGAGGTGGAGCCATCT 7047 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || || || || ||||||||||| || || || ||||| ||| Sbjct 7046 GACACCATTGAAAATGTAAAGGCAAAGATTCAAGATAAAGAGGGTATTCCCCCAGATCAA 6987 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | || | ||| || |||||||| |||||| | || | || || || || Sbjct 6986 CAACGTCTTATCTTTGCTGGCAAGCAGCTAGAAGATGGTCGCACCCTGTCTGACTACAAC 6927 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| | || ||||||||||| Sbjct 6926 ATCCAAAAAGAGTCTACCCTTCATTTAGT 6898 >seq95541 Length=3042 Score = 127 bits (140), Expect = 3e-24 Identities = 156/212 (74%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 18410 TTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATG 18469 ||| ||||||| || ||||||| ||||| ||||| ||||| ||||| || ||||| | Sbjct 2355 TTTCCTTTGGA-TCCCTTATATATGTGTCAATTAATAAAGAGTACATCTCTGAATGAACA 2413 Query 18470 CTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTA 18529 |||||||||| || ||||||| ||| || | || || || | ||||| ||| Sbjct 2414 TTTTCCATAGCAATTTGAAAACCATAGAAGCACCTGGCTTCAGTCACTTGAACCTCTTGT 2473 Query 18530 TAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAA 18589 | || | || ||||| ||||||||||| ||||| |||| || ||| || ||||| || Sbjct 2474 GAGAAACGCTCCACCAAGTTCTCATTAACAATACCATCAGAAGCTGCAAAGAATGCTAAG 2533 Query 18590 ACATATTTAATGAAATGTTTTTCATTATCCTT 18621 |||| || || |||||||| ||| ||| || Sbjct 2534 ACATGCTTGATAAAATGTTTCTCACAATCTTT 2565 >seq48995 Length=1108 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| | ||||| ||||||||||| | ||||| || |||| Sbjct 220 ATGCAAATTTTTGTAAAAACTCTTACTGGTAAAACTATTACTCTTGAAGTTGAGCCTTCT 279 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || ||| ||||| |||||||| || || || || ||||| ||| Sbjct 280 GACACAATTGAAAATGTTAAAGCAAAAATTCAAGATAAGGAGGGGATTCCCCCAGACCAA 339 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | |||| || || || || || |||||| | || || ||||| || || Sbjct 340 CAGAGGCTCATTTTCGCTGGAAAACAACTTGAAGATGGGCGCACATTGTCAGACTACAAC 399 Query 156003 AT 156004 || Sbjct 400 AT 401 >seq7617 Length=2772 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 17869 GTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCAT 17928 ||||||||| ||||||||||| ||||| ||||| || |||||||| || || | |||||| Sbjct 199 GTATTCTCCAACTTTTTTCTCAAAGAAGTTTGTTTTGCCTTCCAACGAGATGAGATTCAT 140 Query 17929 AAAATCAAATGGATT 17943 |||||| |||||||| Sbjct 139 AAAATCGAATGGATT 125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 730407487534400