Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ismenius_20[genbank_20GCA_5F001485965.1_202015-12-16] 160,084 sequences; 259,837,422 total letters Query= NC_023574.1 Length=128546 Score E Sequences producing significant alignments: (Bits) Value seq9304 289 2e-73 seq5392 105 5e-18 >seq9304 Length=29499 Score = 289 bits (320), Expect = 2e-73 Identities = 950/1452 (65%), Gaps = 32/1452 (2%) Strand=Plus/Minus Query 68072 TATGAAGACCGCATTGCTTTTAATGCCTTAGTTATGGCTGATGGTGACGAACAATTGGCT 68131 |||||||| || | || || ||||| || | || |||| |||||| || | || Sbjct 6963 TATGAAGATCGTGTCGCATTCAATGCGTTGTACTTTGCGAATGGCGACGAAGAACTAGC- 6905 Query 68132 CTTAACATT-GCGCATGAAATGATTTCACAAACCT-ATCAACCTGCAACACCAACATTCT 68189 |||| | || || |||||||||| ||| ||| | ||||||| ||||| || |||| | Sbjct 6904 CTTAGCTTTAGCTGATGAAATGATC-CACCAACGTTATCAACCAGCAACCCCTTCATTTT 6846 Query 68190 CTAATGCTGGTAAGTTG-CGTGGTGGTAATGCTGTATCATGTTTCCTTTTGAATATTGAA 68248 |||||||| | || ||| ||||| | ||| || |||||| |||| | | | Sbjct 6845 TGAATGCTGG-ACGTAAACGTCGTGGTGAACTTGTTTCTTGTTTC---TTGACTCAAGTA 6790 Query 68249 ---GATAATATGACGTCTATTGGGCGCTCAGTAAATTCAGTTCTTCAATTGTCTAAAATG 68305 ||| |||||| || || || || || | || || | | ||| | || ||| Sbjct 6789 ACGGATGATATGAATTCAATCGGTCGTTCGATCAACTCTGCCTTACAACTTTCACGAATC 6730 Query 68306 GGTGGTGGAGTTGGAATCA-ACTTAACTGATATCCGTCCGTCAGGAGACCCTATCAAGGG 68364 |||||||| ||||| |||| |||| || | | ||| | |||| || ||||| || Sbjct 6729 GGTGGTGGTGTTGGGATCACACTTT-CTAACTTACGTGAAGCCGGAGCGCCGATCAAAGG 6671 Query 68365 TATTGAGAATATG--GCTGATGGAGTTGTTCCAATCATGAAACTCTATGAAGATTCATTT 68422 | ||| || ||| || ||||||||| |||||||| | | ||||||| ||| Sbjct 6670 A--TACGAAGGTGCAGCTAGCGGTGTTGTTCCAGTCATGAAATTGTTTGAAGATAGCTTT 6613 Query 68423 TCATATGCCAATCAGTTGGGGACAA-GAAATGGGGCAGGAGTAACTTATCTCAATGTATT 68481 ||| | || || || || |||| | | || || || || |||| | || || || Sbjct 6612 AGTTATTCGAACCAATTAGG-ACAACGTCAAGGTGCGGGTGTCGTTTATTTAAACGTCTT 6554 Query 68482 CCATAAAGATATTGTTAAATTCCTCTCTACaaaaaaaGAAAATGCTGACGAAAAAGTTCG 68541 ||| ||| || | | ||||| || |||||||||||||||| |||||||| |||| Sbjct 6553 CCACCCAGACATCATGATGTTCCTTTCAGCAAAAAAAGAAAATGCAGACGAAAAGATTCG 6494 Query 68542 TGTTAAAACTCTTTCTCTCGGTGTTGTAGTTCCTGATAAATTCTATGAACTCATTGCTAA 68601 || || ||| | || || ||||| | || || ||||||||||||||| | ||| Sbjct 6493 CGTGAAGACTTTATCACTTGGTGTGATCGTCCCAGATAAATTCTATGAATTAGCACGTAA 6434 Query 68602 AGGTGAATCAATGTATTTGTTTAGCCCTTATGATATCTACAATGAGTATGGAAAACTAAT 68661 | || ||||||| | || || |||||| | | | || || ||||| | | | Sbjct 6433 AAACCAAGAAATGTATCTATTCAGTCCTTATAGTGTGGAAAAAGAATATGGTGTGCCATT 6374 Query 68662 GTCTGAAATCAACATCACAGAAATGTATGATGAATTAGTTGAAAACAAAAATATCAAGAA 68721 ||| | | | ||||| | ||||| | ||||| | ||| ||||||| || Sbjct 6373 TTCTTACGTAGATATCACTGCGGAATATGACAATTTAGTCGCAAATCCAAATATCCGTAA 6314 Query 68722 AGATAAAATCTTTGCTCGTGACCTTGAAGAAGAAATGTCTAAACTTATTCAAGAATCAGG 68781 | | |||||| || ||||| | ||| | ||||| |||||| | ||||| || || Sbjct 6313 ACAAAAAATCAAAGCCCGTGATTTAGAAAATGAAATCTCTAAATTACAACAAGAGTCTGG 6254 Query 68782 ATATCCATACATCATCAACATTGATACAGCAAACCAAGAAAATGCTGTTGACGGTGTAAT 68841 ||||| || |||||||| |||||||| ||||| | |||||| |||| |||||| ||| Sbjct 6253 TTATCCGTATATCATCAATATTGATACGGCAAATCGTGAAAATCCTGTAGACGGTAAAAT 6194 Query 68842 TAAAATGTCTAACCTTTGCTCTGAAATCCTTCAAGTACAATCTCCATCAGAATTGAACTC 68901 || ||| |||| | || ||||| || | |||||||| | || || | | || Sbjct 6193 TATCATGAGTAACTTATGTTCTGAGATTTTACAAGTACAGACACCTTCTGTCATCAATGG 6134 Query 68902 AGACCAAACTTAT-AAGACTATTGGAACTGACGTATCATGTAACCTTGGTTCAACTAATA 68960 | ||| ||| |||| | | || || ||| | ||||||||| | ||||| || || | Sbjct 6133 CAAGCAAGAATATGAAGAGT-TAGGGACAGACATCTCATGTAACTTAGGTTCTACAAACA 6075 Query 68961 TTACACATCTTATGGAGTCATCTGACTTCGGAAGCTCTGTTAGAACAGCATTTCGTGCAT 69020 | || | ||||| ||||||| || ||||||| | || |||||||| Sbjct 6074 TCGTCAATTTGATGGATAGCCCTGACTTTGGTCGCTCTGTCCGCACGATGACTCGTGCAT 6015 Query 69021 TAACCTATGTTGCAGATAGCTCTAACATTGAAGAAGTTCCTACTGTTAAGAACGCCAACG 69080 | || ||| | ||||| || ||||||| | ||||| | | | |||| ||| Sbjct 6014 TGACGTATATCACAGATGCTTCAGACATTGACGTGGTTCCACCGATCCAAAACGGGAACA 5955 Query 69081 ATAAGTATCACTCAGTAGGGCTAGGGGCAATGGGACTACATGGATTCCTTGCTAAAAATG 69140 | | |||| | | || || || || |||||||| ||| | |||| ||| | Sbjct 5954 AATTGAATCATACGATCGGACTTGGTGCCATGGGACTTCATACTTATTTTGCCAAAGAGC 5895 Query 69141 GTATTCTCTATGGTTCTCCTGAATCAATTGAGTTCACAGGTATGTACTTCCAACTCCTAA 69200 || |||||||| ||||||||||| || || | | || ||| | | | Sbjct 5894 AAATGGAATATGGTTCCGAAGAATCAATTGATTTTACCAATGTTTATTTCATGTTGTTGA 5835 Query 69201 ACTACTGGACTCTATTTGAAAGTAATCGAATTGCTATTGAGCGCAATCAAGCTTTCTATA 69260 | |||||||| || |||||||||| || || |||| | || |||| ||| ||| Sbjct 5834 ATTACTGGACACTTGTTGAAAGTAACAATATCGCACGTGAGAGAAAACAAGTCTTCCATA 5775 Query 69261 ACTTTGATAAATCAGAATATGCCAATGGTAAATACTTCAAACGCTATCTACCACGTGTTA 69320 | ||||| ||||||| ||||| | || | || || | ||| | ||| || Sbjct 5774 ATTTTGAAAAATCAGCTTATGCAGACGGCACTTATTTTGATAAATATGT--CAC-TGGCG 5718 Query 69321 AATTTAAAAATAACCTTTCTGATACAGTCAAAGAATTGTTTAAAGATGTTGATATTCCAA 69380 |||| || || ||||| ||| | |||||| | | | | |||||| | Sbjct 5717 AATTCCAACCAAA---ATCTGAACGAGTTGCTGCTTTGTTTGATGGTATCTTTATTCCGA 5661 Query 69381 CTGCACAAGACTGGGTTGACCTACAGGCTTCAAT--TGAAGAACATGGTCTATATAATTC 69438 |||| |||||||||| || | || |||| ||| || ||||| | ||| | Sbjct 5660 CTGCCCAAGACTGGGAAAACTTGAAGCAAGCAATCATGA--AAGATGGTTTGTATCACCA 5603 Query 69439 TTACCGTTTAGCTGTTGCGCCTACAGGTTCAATTTCTTATATCAACGAAGCTACAGCATC 69498 | ||||||||||| || |||| ||||| |||||||||||||| || ||| ||| Sbjct 5602 AAATCGTTTAGCTGTAGCACCTAATGGTTCTATTTCTTATATCAATGATACTAGTGCAAG 5543 Query 69499 TATTCACCCAAT 69510 ||| || || || Sbjct 5542 TATCCATCCGAT 5531 Score = 141 bits (156), Expect = 8e-29 Identities = 401/608 (66%), Gaps = 11/608 (2%) Strand=Plus/Minus Query 75465 AAAGAAATTGATGGTATTTTTGATTGGACTGCAACAAATCCATATATCGTTCGCAAAACA 75524 |||||||| || | || ||||| ||||| || ||||| ||| | | |||| | Sbjct 4764 AAAGAAATCGAAGAAATCTTTGAATGGACGAATACCAATCCTTATCTA---CAGAAAAAA 4708 Query 75525 GAAAATCGT-TCAA-GATATCTATGAAAATGGAACTCCTCTACAAAAGAAAGTTGCATCA 75582 | | ||| |||| || ||||| |||| || || || || | || ||| |||| Sbjct 4707 GCGGAGCGTATCAATGAGATCTACAAAAACGGTACGCCGTTAGAGAAAAAAATTGCGAGT 4648 Query 75583 GTCTTCTTGGAGTCATTTCTGTTCTACTCAGGGTTCTTTACACCCTTGTATTATGCAGGA 75642 ||||| || || | || | || |||||||| |||| |||||| | |||||| |||| Sbjct 4647 GTCTTTTTAGAAACCTTCTTATTTTACTCAGGATTCTATACACCACTTTATTATTTAGGA 4588 Query 75643 CTTGGAAAGATGAAAAATACAGCAGAAATTATTAAACTTATTCTTCGTGATGAATCTGTC 75702 | || | || ||||| || || || | || ||||||| ||||||||| Sbjct 4587 AATAATAAATTAGCCAACGTGGCAGAGATCATCAAGTTGATCATTCGTGACGAATCTGTC 4528 Query 75703 CACGGTGCTTACATTGGATATAAGCATAAATTAGGATTCGCAGAATTAACAGAAACTGAG 75762 || || | || ||||| ||||| || |||| | | |||||| | ||| || Sbjct 4527 CATGGCACGTATATTGGCTATAAATTCCAACTAGGTTACAACGAATTACCTGAAGAAGAA 4468 Query 75763 CAAGAGGAACAT--GAAGAATGGACATTTAATTTGCTCGATAAGCTCTATCAAAATGAAT 75820 ||||| ||||| |||| |||| | ||||||| | || | | || |||| ||| Sbjct 4467 CAAGA--AACATTGAAAGACTGGATGTATAATTTGTTATATGAATTATACGAAAACGAAG 4410 Query 75821 TGAAATACACTGAACTTCTTTATGATACTGTGGGTTATACAGAGGACGTGAAACAATTCC 75880 | ||||| ||| | |||||| | | |||| || || || || ||| ||| | Sbjct 4409 AGCGCTACACAGAAGAATTATATGATCCAATCGGTTGGACGGAAGAAGTCAAAACATT-C 4351 Query 75881 TTAAG-TACAATGCAGACAAGGCTCTTATGAATCTTGGATTTGATACTTTGTTTGAAGTT 75939 ||| | ||||||||| | || || | |||||||| ||| | || | | || | | Sbjct 4350 TTACGCTACAATGCAAATAAAGCATTGATGAATCTAGGAATGGACCCACTATTCCCTGAT 4291 Query 75940 GGTCGTGAAGATATCAACCCTCTCGTAATGAATGGTATTTCAACTGAAACAGCTAACCAT 75999 | ||| ||||||| |||| |||||||| || || |||| ||| |||||| Sbjct 4290 ACAGCAAACGATGTCAACCCAATCGTGATGAATGGGATCTCTACTGGTACAAGTAACCAC 4231 Query 76000 GATTTCTTCTCAGCGGTAGGTAATGGGTATCTCCTAGGGGAAGTTGAAGCTATGAAAGAT 76059 ||||||||||| || || || || || || |||| | || ||||| ||||||||| Sbjct 4230 GATTTCTTCTCTCAAGTCGGAAACGGCTACCTATTAGGTAACGTAGAAGCGATGAAAGAT 4171 Query 76060 GATGACTA 76067 || || || Sbjct 4170 GAAGATTA 4163 >seq5392 Length=101478 Score = 105 bits (116), Expect = 5e-18 Identities = 150/210 (71%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 60028 GATTTATCTACCACAGGAAAATGAAGCAATTAATGATAAGTCAGGATATGCAAACTCTGT 60087 ||| ||||||||||| ||||| |||||||| ||||||||| | | ||||||| || Sbjct 41851 GATCTATCTACCACAAGAAAACGAAGCAATCAATGATAAGACTGCATATGCAGACAGCAA 41792 Query 60088 AATGATTGCAGAAGCTGATAC---AAATGAACTGTTGAGTTCTGACTTTATTGTAGCTGT 60144 ||||||||| |||||||| ||| | ||| || |||||| || | || | Sbjct 41791 AATGATTGCCTTGGCTGATACAGAAAAAGTACTAGAAAG---TGACTTGATGATCGCACT 41735 Query 60145 CCTAGACGGTGCAACAATTGATGTTGGTGTGGCTAGTGAAATTGGAGTTGCCTATGCTAA 60204 ||||||| || || |||| || || ||| ||| || || || ||||||||||| Sbjct 41734 TTTAGACGGATTGACGATCGATGCCGGAGTTGCTTCTGAGATCGGTGTCGCCTATGCTAA 41675 Query 60205 AGGCATTCCAGTTATTGGTCTGTATTCAGA 60234 |||||| || | |||||| | ||| |||| Sbjct 41674 AGGCATCCCGATCATTGGTTTATATACAGA 41645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410420095331068