Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ismenius_20[genbank_20GCA_5F001485965.1_202015-12-16] 160,084 sequences; 259,837,422 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq11297 623 1e-173 seq95541 86.0 9e-12 seq29470 86.0 9e-12 >seq11297 Length=12984 Score = 623 bits (690), Expect = 1e-173 Identities = 1126/1629 (69%), Gaps = 23/1629 (1%) Strand=Plus/Minus Query 68354 TTATTTTATCCTTATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGAT 68413 |||||||| | || || | ||||||||||| | | ||| |||||||| |||| | Sbjct 12755 TTATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGT 12696 Query 68414 AGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGG 68473 ||||||| || ||||| | || | |||| ||| |||||| || || ||||| Sbjct 12695 AGTACATTCCTGTTTTTAATCCCATTTTCCAAGCGTGGAAATGAATCGACGTAAGTTTTC 12636 Query 68474 AATAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTC 68533 ||| | || | || | ||| || || | |||||||||||||| || |||||||||| Sbjct 12635 CATAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGACTTTGATCTATAAAAGCTCCTC 12576 Query 68534 TATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCT--TAAAAAT 68591 |||| || ||||| | ||| | || | | ||| ||||| | || | || |||| Sbjct 12575 TATCAGCTGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAAT 12516 Query 68592 CTGTTTGATATCATCTGGAAGGCT---CGTATTTTGAATGGATCCACCATCGGATATAAT 68648 || || || || | |||| | | | ||| || |||||| | | ||||||| Sbjct 12515 CTCTT--ATTTCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAAT 12458 Query 68649 TATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGG 68708 | ||| || || || |||| |||||| | | || ||| | | || ||||| | Sbjct 12457 AAGATTTTTCATATCTTCATCCCACAAATCAGCCCGAGTCAAATCAGTCAGAAGATGATG 12398 Query 68709 ATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGG 68768 || |||| ||||||| |||||||| ||||| | ||||||||| ||| | || Sbjct 12397 GTTCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAAGGG 12338 Query 68769 TTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCAC 68828 ||| | ||||||| | || || |||||||| ||||| || ||||| |||||||| || | Sbjct 12337 TTCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATAGGAGCTAT 12278 Query 68829 CAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCA 68888 ||||| | ||| | | ||||||| || || || ||||| || ||| ||||| Sbjct 12277 CAATAGAGAATTGCGCAAACCATGTTTTGCTATCTTTTCTTTAAGGACAGCCCAGTCCCA 12218 Query 68889 AAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGA 68948 ||| || | || | ||| | ||| || || || || || | ||||| | Sbjct 12217 AAGGTCTGTAGGAGTTTTGTCCCACATATCATACTGGAGGATACCTTGGCTTGC-TGGAC 12159 Query 68949 TCCATT-ATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATG 69007 ||| || |||||| || | ||||| | |||||||| ||||||||| || ||||||| Sbjct 12158 TCCCTTGATATGTACTGTACGCACCTTCTTTTTCAGCTAATTCACAACTAGCTTCTAATG 12099 Query 69008 CACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGA 69067 |||| |||||||||||||| || || | | ||||||| | ||||| ||| ||| Sbjct 12098 CACCATAATAAATTGTTTCAAATATTTGTTGATTGAGAAGTATTGCTTTCTCACTTTCGT 12039 Query 69068 ATGGATAATGT-AAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGT 69126 | |||| | | | | | ||| |||||||||| |||||||| |||||||| |||||| Sbjct 12038 A-AGATATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATACCAATAGGT 11980 Query 69127 CTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 69186 ||||||||| |||||||| ||| ||||| || | ||||||| |||||| ||| |||| | Sbjct 11979 CTATGTCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAATTAACATCAATAACT 11920 Query 69187 TTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGT 69246 || || | |||| | ||| | || | || |||| ||| ||||| ||||| Sbjct 11919 TTGTTTAAATTTTGAGTTACAATCTTTGTGATTTCTTTTAATTTTTTAAAATTAAATCTG 11860 Query 69247 CCATCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCA--T 69304 || | ||||||||| || ||||||| || || || || || ||||| || ||| | Sbjct 11859 TTATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTCATCT 11800 Query 69305 TAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGAT 69364 | | || ||||| | | ||| || || ||||| |||||||| ||||| || |||| Sbjct 11799 TCTGAAGTG--TATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCAAGAT 11742 Query 69365 TTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTT 69424 ||| |||||||||||| ||||||| || ||||| || | || | || |||||||| | Sbjct 11741 TTTTTTGATTACTCTTTCTGTTACAAGCATCCTTATACAACATGTATGGTGTACCAGTCT 11682 Query 69425 CAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTAC-GGTCTTGTAA 69483 | | || | ||| ||||| || ||||| | || || | | | | || || || ||| Sbjct 11681 CCACTTGGGCTTCTATAATTGACTTCCATA--ACTCTTG-AGCTCTGACTTGTTTTATAA 11625 Query 69484 --CGCTTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACA-TCA 69540 || || |||| |||||||| | |||||| ||| ||||| ||| || || || ||| Sbjct 11624 ATCGTTTTTCTTCTTCATATTTGGCATATAGTTCTTCAAATTCCTCT-CCAAAGCAGTCA 11566 Query 69541 TCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGT 69600 | | |||||||| |||| |||||||| | ||| || ||||| | | |||| | Sbjct 11565 GCGAGGCCAGGACAATCATGAGGACACATGAGACTCCAAACTTCATCCTTTTCTACTCTT 11506 Query 69601 TTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCA 69660 |||||||| ||||| || ||||| | ||| ||| || ||||| | ||| ||||||| Sbjct 11505 TTCATAAACAGATCTGGTATCCATAAAGCATAAAACAGTTCTCTAGCTCTCATTTCTTCC 11446 Query 69661 TTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGA 69720 || ||||| || || || | ||| | || || | ||||| | |||||| || |||| | Sbjct 11445 TTACCTGTGTTCTTCTTTAAATCCAAGAATTCAAATATATCCGCATGCCAAGGCTCTAAA 11386 Query 69721 TATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTA 69780 || || || | | || || ||||| ||||| || ||||||| |||||||| || || Sbjct 11385 TAAATTGCAAATGCGCCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCGGTATTG 11326 Query 69781 TTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAA 69840 ||||| ||||||| ||| || | | |||||| || ||||| || |||| || ||| Sbjct 11325 TTATACACTCTCAACATTGGCACTAGACCATTTGAGACCCCATTAGTGCCAGCTATGTAA 11266 Query 69841 CTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATT 69900 || || | || | || || |||||| || || || |||||| ||| Sbjct 11265 GAACCCTGAGCTCTGATGCAATGTGTATGTAAACCTATGCCACCAGCAGATTTAGAAATT 11206 Query 69901 AGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGA 69960 | ||||| |||| || || ||| | ||||| || |||||||||||| |||| | | Sbjct 11205 AATGCACATTGTTTTAAAGTATCAAAAATACCTTCAATGCTATCATCTTTCATAGCTATA 11146 Query 69961 AGAAAACAG 69969 || |||||| Sbjct 11145 AGGAAACAG 11137 Score = 100 bits (110), Expect = 4e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 70135 TTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTAT 70194 ||||| ||||| ||||||| |||||| |||||| |||||| || ||||||||||||||| Sbjct 10639 TTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTGAAACCAAAATAGTTGTAT 10580 Query 70195 GAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTT 70244 ||| ||||| || |||| ||| |||| | || ||| ||||| | ||| Sbjct 10579 TTAAAATCTCTATCATAAACAATGGCAGAGTCTAATTTGTCCTTGTTTTT 10530 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 70345 TTTTTTGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCA 70404 || || || || || |||||||| ||||| ||||||||||| || | ||| ||||| || Sbjct 9881 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATGGCATAATCG 9822 Query 70405 GGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAGTT 70464 ||||| | ||| || ||||||||||||||| ||||||| |||| | || |||| Sbjct 9821 GGATGATCTGTGGTCTTAGTAGCTGCTATTTCAGCAGCTAGATTATCAAGCTCAGCAGTT 9762 Query 70465 GTAACTCCGTtatata 70480 || || || ||||| Sbjct 9761 GTTACACCAGAATATA 9746 >seq95541 Length=3042 Score = 86.0 bits (94), Expect = 9e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 40103 TTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTC 40162 || |||| ||||||||||| || ||||||||||| || || || ||||| ||||| | | Sbjct 2738 TTGGATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGC 2797 Query 40163 CATATATCACGATATTGTATTGGAAAAATAACAAA 40197 |||||||| ||||||| ||||| || || || || Sbjct 2798 CATATATCTGGATATTGGATTGGGAATATTACGAA 2832 >seq29470 Length=9567 Score = 86.0 bits (94), Expect = 9e-12 Identities = 244/370 (66%), Gaps = 9/370 (2%) Strand=Plus/Plus Query 162494 TTATGACCCC--TATTAATCCTATGCTAGCAGAATCATGCGATTCCGTTAACAAGGCATT 162551 ||||||| || ||||| || ||| |||| ||| | ||| | || ||| | | ||| | Sbjct 3654 TTATGACTCCAGTATTA--CCGATGTTAGCTGAAGCTTGCAAGTCAGTTGAAATGGCTAT 3711 Query 162552 TAAAAAATTTCCATCTGGGATGTTTGCAGAAGTCAAATATGATGGTGAACGAGTGCAAGT 162611 ||||||| |||| ||| |||||| | || | ||||||||||| ||||| || ||||| Sbjct 3712 GAAAAAATGTCCAAATGGCATGTTTTCTGAGATAAAATATGATGGAGAACGGGTTCAAGT 3771 Query 162612 TCATAAAAACAATAACAAGTTTGCGTTCTTTAGTAGAAACATGAAACCCGTTTTACAACA 162671 |||||||| || |||| | ||| | | | ||||| || | || Sbjct 3772 CCATAAAAAGGGAAATGAGTTCAAATATTTTTCCCGTGCCTTAAAACCAGTAATGGCTCA 3831 Query 162672 CAAAGTTGATTATCTAAAAGAATACCTTCCCATAGCA-TTCAAAAAAGCTACATCTATTA 162730 ||||||| | || | ||||| || | |||| |||| ||| ||| | | || | | Sbjct 3832 CAAAGTTAGTCATTTTAAAGATTATTTACCCAAAGCATTTCCTAAAGGAGATGACT-TGA 3890 Query 162731 TCTTGGATTCTGAAATTGTTCTAGTCGACGAACATAATG---TACCACTTCCGTTTGGAA 162787 |||||||| ||||| | || | || || | ||| || |||| | || || || | Sbjct 3891 TCTTGGATGCTGAAGTACTTATGGTTGATGTCAATACTGGAAAACCATTGCCTTTCGGTA 3950 Query 162788 GTTTAGGAATACATAAAAAGAAAGAATATAAAAACTCTAATATGTGTTTGTTCGTGTTTG 162847 ||||| || || ||| | ||||| |||| | || | | || || | | |||| Sbjct 3951 CATTAGGTATTCACAAACAATCAGAATTTAAAGATGCTCAAGTTTGCTTATATATATTTG 4010 Query 162848 ATTGTTTATA 162857 |||| ||||| Sbjct 4011 ATTGCTTATA 4020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685534261145760