Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ismenius_20[genbank_20GCA_5F001485965.1_202015-12-16] 160,084 sequences; 259,837,422 total letters Query= NC_027341.1 Length=130008 Score E Sequences producing significant alignments: (Bits) Value seq9304 333 2e-86 seq5392 100 2e-16 >seq9304 Length=29499 Score = 333 bits (368), Expect = 2e-86 Identities = 1157/1777 (65%), Gaps = 49/1777 (3%) Strand=Plus/Minus Query 68735 TATGAAGACCGCATTGCTTTTAATGCCTTAGTTATGGCTGATGGTGACGAACAATTGGCT 68794 |||||||| || | || || ||||| || | || |||| |||||| || | || Sbjct 6963 TATGAAGATCGTGTCGCATTCAATGCGTTGTACTTTGCGAATGGCGACGAAGAACTAGC- 6905 Query 68795 CTTAACATT-GCGCATGAAATGATTTCACAAACCT-ATCAACCTGCAACACCAACATTCT 68852 |||| | || || |||||||||| ||| ||| | ||||||| ||||| || |||| | Sbjct 6904 CTTAGCTTTAGCTGATGAAATGATC-CACCAACGTTATCAACCAGCAACCCCTTCATTTT 6846 Query 68853 CTAATGCTGGTAAGTTG-CGTGGTGGTAATGCTGTATCATGTTTCCTTTTGAATATTGAA 68911 |||||||| | || ||| ||||| | ||| || |||||| |||| | | | Sbjct 6845 TGAATGCTGG-ACGTAAACGTCGTGGTGAACTTGTTTCTTGTTTC---TTGACTCAAGTA 6790 Query 68912 ---GATAATATGACGTCTATTGGGCGCTCAGTAAATTCAGTTCTTCAATTGTCTAAAATG 68968 ||| |||||| || || || || || | || || | | ||| | || ||| Sbjct 6789 ACGGATGATATGAATTCAATCGGTCGTTCGATCAACTCTGCCTTACAACTTTCACGAATC 6730 Query 68969 GGTGGTGGAGTTGGAATCA-ACTTAACTGATATCCGTCCGTCAGGAGACCCTATCAAGGG 69027 |||||||| ||||| |||| |||| || | | ||| | |||| || ||||| || Sbjct 6729 GGTGGTGGTGTTGGGATCACACTTT-CTAACTTACGTGAAGCCGGAGCGCCGATCAAAGG 6671 Query 69028 TATTGAGAATATG--GCTGATGGAGTTGTTCCAATCATGAAACTCTATGAAGATTCATTT 69085 | ||| || ||| || ||||||||| |||||||| | | ||||||| ||| Sbjct 6670 A--TACGAAGGTGCAGCTAGCGGTGTTGTTCCAGTCATGAAATTGTTTGAAGATAGCTTT 6613 Query 69086 TCATATGCCAATCAGTTGGGGACAA-GAAATGGGGCAGGAGTAACTTATCTCAATGTATT 69144 ||| | || || || || |||| | | || || || || |||| | || || || Sbjct 6612 AGTTATTCGAACCAATTAGG-ACAACGTCAAGGTGCGGGTGTCGTTTATTTAAACGTCTT 6554 Query 69145 CCATAAAGATATTGTTAAATTCCTCTCTACaaaaaaaGAAAATGCTGACGAAAAAGTTCG 69204 ||| ||| || | | ||||| || |||||||||||||||| |||||||| |||| Sbjct 6553 CCACCCAGACATCATGATGTTCCTTTCAGCAAAAAAAGAAAATGCAGACGAAAAGATTCG 6494 Query 69205 TGTTAAAACTCTTTCTCTCGGTGTTGTAGTTCCTGATAAATTCTATGAACTCATTGCTAA 69264 || || ||| | || || ||||| | || || ||||||||||||||| | ||| Sbjct 6493 CGTGAAGACTTTATCACTTGGTGTGATCGTCCCAGATAAATTCTATGAATTAGCACGTAA 6434 Query 69265 AGGTGAATCAATGTATTTGTTTAGCCCTTATGATATCTACAATGAGTATGGAAAACTAAT 69324 | || ||||||| | || || |||||| | | | || || ||||| | | | Sbjct 6433 AAACCAAGAAATGTATCTATTCAGTCCTTATAGTGTGGAAAAAGAATATGGTGTGCCATT 6374 Query 69325 GTCTGAAATCAACATCACAGAAATGTATGATGAATTAGTTGAAAACAAAAATATCAAGAA 69384 ||| | | | ||||| | ||||| | ||||| | ||| ||||||| || Sbjct 6373 TTCTTACGTAGATATCACTGCGGAATATGACAATTTAGTCGCAAATCCAAATATCCGTAA 6314 Query 69385 AGATAAAATCTTTGCTCGTGACCTTGAAGAAGAAATGTCTAAACTTATTCAAGAATCAGG 69444 | | |||||| || ||||| | ||| | ||||| |||||| | ||||| || || Sbjct 6313 ACAAAAAATCAAAGCCCGTGATTTAGAAAATGAAATCTCTAAATTACAACAAGAGTCTGG 6254 Query 69445 ATATCCATACATCATCAACATTGATACAGCAAACCAAGAAAATGCTGTTGACGGTGTAAT 69504 ||||| || |||||||| |||||||| ||||| | |||||| |||| |||||| ||| Sbjct 6253 TTATCCGTATATCATCAATATTGATACGGCAAATCGTGAAAATCCTGTAGACGGTAAAAT 6194 Query 69505 TAAAATGTCTAACCTTTGTTCTGAAATCCTTCAAGTACAATCTCCATCAGAATTGAACTC 69564 || ||| |||| | |||||||| || | |||||||| | || || | | || Sbjct 6193 TATCATGAGTAACTTATGTTCTGAGATTTTACAAGTACAGACACCTTCTGTCATCAATGG 6134 Query 69565 AGACCAAACTTAT-AAGACTATTGGAACTGACGTATCATGTAACCTTGGTTCAACTAATA 69623 | ||| ||| |||| | | || || ||| | ||||||||| | ||||| || || | Sbjct 6133 CAAGCAAGAATATGAAGAGT-TAGGGACAGACATCTCATGTAACTTAGGTTCTACAAACA 6075 Query 69624 TTACACATCTTATGGAGTCATCTGACTTCGGAAGCTCTGTTAGAACAGCATTTCGTGCAT 69683 | || | ||||| ||||||| || ||||||| | || |||||||| Sbjct 6074 TCGTCAATTTGATGGATAGCCCTGACTTTGGTCGCTCTGTCCGCACGATGACTCGTGCAT 6015 Query 69684 TAACCTATGTTGCAGATAGCTCTAACATTGAAGAAGTTCCTACTGTTAAGAACGCCAACG 69743 | || ||| | ||||| || ||||||| | ||||| | | | |||| ||| Sbjct 6014 TGACGTATATCACAGATGCTTCAGACATTGACGTGGTTCCACCGATCCAAAACGGGAACA 5955 Query 69744 ATAAGTATCACTCAGTAGGGCTAGGGGCAATGGGACTACATGGATTCCTTGCTAAAAATG 69803 | | |||| | | || || || || |||||||| ||| | |||| ||| | Sbjct 5954 AATTGAATCATACGATCGGACTTGGTGCCATGGGACTTCATACTTATTTTGCCAAAGAGC 5895 Query 69804 GTATTCTCTATGGTTCTCCTGAATCAATTGAGTTCACAGGTATGTACTTCCAACTCCTAA 69863 || |||||||| ||||||||||| || || | | || ||| | | | Sbjct 5894 AAATGGAATATGGTTCCGAAGAATCAATTGATTTTACCAATGTTTATTTCATGTTGTTGA 5835 Query 69864 ACTACTGGACTCTATTTGAAAGTAATCGAATTGCTATTGAACGCAATCAATCTTTCTATA 69923 | |||||||| || |||||||||| || || ||| | || ||| ||| ||| Sbjct 5834 ATTACTGGACACTTGTTGAAAGTAACAATATCGCACGTGAGAGAAAACAAGTCTTCCATA 5775 Query 69924 ACTTTGATAAATCAGAATATGCCAATGGTAAATACTTCAAACGCTATCTACCACGTGTTA 69983 | ||||| ||||||| ||||| | || | || || | ||| | ||| || Sbjct 5774 ATTTTGAAAAATCAGCTTATGCAGACGGCACTTATTTTGATAAATATGT--CAC-TGGCG 5718 Query 69984 AATTCAAAAATAATCTTTCTGATACAGTCAAAGAATTGTTTAAAGATGTTGATATTCCAA 70043 ||||| || || ||||| ||| | |||||| | | | | |||||| | Sbjct 5717 AATTCCAACCAAA---ATCTGAACGAGTTGCTGCTTTGTTTGATGGTATCTTTATTCCGA 5661 Query 70044 CTGCACAAGATTGGGTTGACCTACAAGC-TTCAATCGAAGAACATGGTCTATATAACTCT 70102 |||| ||||| |||| | || |||| ||||| || ||||| | ||| || Sbjct 5660 CTGCCCAAGACTGGG-AAAACTTGAAGCAAGCAATCATGAAAGATGGTTTGTATCACCAA 5602 Query 70103 TACCGTTTAGCTGTTGCACCTACAGGTTCAATTTCTTATGTAAATGAAGCAACTGCTTCT 70162 | ||||||||||| ||||||| ||||| ||||||||| | ||||| | | ||| | Sbjct 5601 AATCGTTTAGCTGTAGCACCTAATGGTTCTATTTCTTATATCAATGATACTAGTGCAAGT 5542 Query 70163 ATTCACCCAATCGTACAAAAGATTGAGAAGCGTTCAGAAGGTAAACGTGGTGATGTGTTC 70222 || || || ||| | | ||| || | || |||| ||| ||| | | | Sbjct 5541 ATCCATCCGATCACTCGTATGATCGAAGAACGCCAAGAAAAGAAAATTGGGAAAATCTAT 5482 Query 70223 TATCCAGCACCTTATCTTGCA---GAAGGTCTTCCTTATTATGAATCAGCTTATAATATT 70279 || ||||| |||||| | || ||| | || ||||| || |||||| |||| Sbjct 5481 TACCCAGCGCCTTATTTATCAAATGAAACAATCCCGTATTACACTTCTGCTTATGATATG 5422 Query 70280 GACCAACGTAGAGTTATTGATATTTATGCCGAAGCTCAGAAACATGTTGACCAATCTCTA 70339 || |||| ||| || |||||||||||| ||| || |||||||| || ||| | Sbjct 5421 GATATGCGTAAAGTGATCGATATTTATGCCACAGCACAAAAACATGTGGATCAAGGAATG 5362 Query 70340 TCTATGACTTTATTCATGAATGCAGACCACGGAAAAGATTTGTATGAGTGGAAAATAGGA 70399 |||||| || || ||| | |||| | | ||| |||||| || |||||| Sbjct 5361 AGTATGACGTTGTTTATGCGTTCAGAAATCCCAGAAGGTTTGTACGAATGGAAA------ 5308 Query 70400 AGCAAAGGAGAAGATTCATTCACTACTCGTGACATTAATATTCTTCGAAATTATGCTTGG 70459 ||| || || | || | | || ||||| | |||||||| || | || |||| Sbjct 5307 --GAAACGACAAAA--CAAT--CCACACGTGATCTAAATATTCTAAGACACTACGCTT-- 5256 Query 70460 TCaaaaaa--aaTAAAATCAATTTACTATGTTCGTAC 70494 || | ||| ||| ||||| ||||| ||||| ||||| Sbjct 5255 TCCACAAAGGAATCAAATCGATTTATTATGTACGTAC 5219 Score = 104 bits (114), Expect = 2e-17 Identities = 243/366 (66%), Gaps = 3/366 (1%) Strand=Plus/Minus Query 76846 TACATCGGCTACAAGTTTCAAATTGGATATAATGAATTAACAGAAGCTGAACAAGAAGAG 76905 || || ||||| || || ||| | || || || |||||| | |||| ||||||||| Sbjct 4518 TATATTGGCTATAAATTCCAACTAGGTTACAACGAATTACCTGAAGAAGAACAAGAAACA 4459 Query 76906 TTAGAAGAATGGACATTTGATTTACTTGATAAGCTCTATCAAAATGAATTGAAATACACT 76965 || |||| |||| | | |||| | || | | || |||| ||| | ||||| Sbjct 4458 TTGAAAGACTGGATGTATAATTTGTTATATGAATTATACGAAAACGAAGAGCGCTACACA 4399 Query 76966 GAACTTCTTTATGATGAAGTAGGTTATACTGAGGATGTGAAACAATTCCTCAAATACAAC 77025 ||| | |||||| | | |||| || || || || ||| |||| | ||||| Sbjct 4398 GAAGAATTATATGATCCAATCGGTTGGACGGAAGAAGTCAAAACATTCTTACGCTACAAT 4339 Query 77026 GCAGACAAAGCTCTTATGAATCTTGGATTCGACACCTTGTTTGAAGTTGGACGTGAAGAT 77085 ||| | ||||| | |||||||| ||| | ||| | | || | | | | ||| Sbjct 4338 GCAAATAAAGCATTGATGAATCTAGGAATGGACCCACTATTCCCTGATACAGCAAACGAT 4279 Query 77086 ATCAATCCACTTGTAATGAATGGTATCTCAACTGAAACAGCTAACCATGATTTCTTCTCA 77145 |||| ||| | || |||||||| ||||| |||| ||| |||||| ||||||||||| Sbjct 4278 GTCAACCCAATCGTGATGAATGGGATCTCTACTGGTACAAGTAACCACGATTTCTTCTCT 4219 Query 77146 GCGGTAGGTAATGGATATCTCCTTGGAGAAGTCGAAGCTATGAAAGACGATGACTACGCT 77205 || || || || || || | || | || ||||| |||||||| || || ||| Sbjct 4218 CAAGTCGGAAACGGCTACCTATTAGGTAACGTAGAAGCGATGAAAGATGAAGATTAC--- 4162 Query 77206 TTGATT 77211 |||||| Sbjct 4161 TTGATT 4156 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 76136 CATGCGGAATCTTATTCAACAATCTTCTCAACTTTCTGTACTATGAAAGAGATTGATGGA 76195 |||||| || ||| || | |||||| || || ||| | ||||| || || | | Sbjct 4809 CATGCGAAAAGTTACTCTTCGATCTTCAGTACATTGAATACGAAAAAAGAAATCGAAGAA 4750 Query 76196 ATATTTGAGTGGACTGCAACAAATCCTTATATTGTTAAGAAAACAGAAATCGT-TCAA-G 76253 || ||||| ||||| || ||||||||| | || ||| | || ||| |||| | Sbjct 4749 ATCTTTGAATGGACGAATACCAATCCTTATCTACAGAAAAAAGCGGAG--CGTATCAATG 4692 Query 76254 ATATCTACGAAAATGGAACTCCTCTACAAAAGAAAATTGCATCAGTATTCTTGGAATCCT 76313 | |||||| |||| || || || || | || |||||||| || || || ||| ||| Sbjct 4691 AGATCTACAAAAACGGTACGCCGTTAGAGAAAAAAATTGCGAGTGTCTTTTTAGAAACCT 4632 Query 76314 TCCTTTTCTACTCAGGATTCTTTACACCCTTGTATTAT 76351 || | || ||||||||||||| |||||| | |||||| Sbjct 4631 TCTTATTTTACTCAGGATTCTATACACCACTTTATTAT 4594 >seq5392 Length=101478 Score = 100 bits (110), Expect = 2e-16 Identities = 149/210 (71%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 60680 GATTTATCTACCACAGGAAAATGAAGCAATTAATGATAAGTCAGGATATGCAAACTCTGT 60739 ||| ||||||||||| ||||| |||||||| ||||||||| | | ||||||| || Sbjct 41851 GATCTATCTACCACAAGAAAACGAAGCAATCAATGATAAGACTGCATATGCAGACAGCAA 41792 Query 60740 AATGATTGCAGAAGCTGATAC---AAATGAACTGTTGAGTTCTGACTTTATTGTAGCTGT 60796 ||||||||| |||||||| ||| | ||| || |||||| || | || | Sbjct 41791 AATGATTGCCTTGGCTGATACAGAAAAAGTACTAGAAAG---TGACTTGATGATCGCACT 41735 Query 60797 CCTAGACGGTGCAACAATTGATGTTGGTGTAGCTAGTGAAATTGGAGTTGCTTATGCTAA 60856 ||||||| || || |||| || || ||| ||| || || || || |||||||| Sbjct 41734 TTTAGACGGATTGACGATCGATGCCGGAGTTGCTTCTGAGATCGGTGTCGCCTATGCTAA 41675 Query 60857 AGGCATTCCAGTTATTGGTCTGTATTCAGA 60886 |||||| || | |||||| | ||| |||| Sbjct 41674 AGGCATCCCGATCATTGGTTTATATACAGA 41645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415089367661556