Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ismenius_20[genbank_20GCA_5F001485965.1_202015-12-16] 160,084 sequences; 259,837,422 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq95541 93.3 3e-14 seq9936 93.3 3e-14 seq2007 87.8 1e-12 >seq95541 Length=3042 Score = 93.3 bits (102), Expect = 3e-14 Identities = 140/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 43796 GACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTAT--ATCTTTGGTTT 43853 ||||||||| ||||| |||||||| || ||||||||||| | | | || | Sbjct 2589 GACTTAGCAGATTGGGAGACATTAAAAGATTGTGAGAAACATTTTATCAAGCAT--GTCT 2532 Query 43854 TGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGC 43913 | || || ||||| || || || || || ||||| || ||||| || || | | Sbjct 2531 TAGCATTCTTTGCAGCTTCTGATGGTATTGTTAATGAGAACTTGGTGGAGCGTTTCTCAC 2472 Query 43914 AAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973 |||| |||||| | | ||||| | || || ||||| ||||||||||| || |||||| Sbjct 2471 AAGAGGTTCAAGTGACTGAAGCCAGGTGCTTCTATGGTTTTCAAATTGCTATGGAAAATG 2412 Query 43974 TTCATTCGGAAATGTAC 43990 ||||||| || |||||| Sbjct 2411 TTCATTCAGAGATGTAC 2395 >seq9936 Length=26904 Score = 93.3 bits (102), Expect = 3e-14 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 115031 AATGGTCATACGTGAAGGAAAAGCATGCGGATTAATAATCAAGTCTGGCACTAACCCGTC 115090 ||| |||||||| ||||| | ||||| ||||||||||| | ||||| ||| || || Sbjct 17874 AATTGTCATACGAGAAGGGATGGCATGGGGATTAATAATGATATCTGGTGTTAAGCCCTC 17933 Query 115091 GGCTGTGAACGGCATGTCGTGCTGATCG-TACATCATTCCACAAGTTCCTTTTTGAGCGG 115149 | ||| |||||||| || | || ||| ||| |||||||| |||||||||||| || Sbjct 17934 GCATGTAAACGGCATATC-TTCTTGTCGATACTGGATTCCACAGGTTCCTTTTTGACCGT 17992 Query 115150 TAAACGATGCAAATTTATCACCAAT 115174 | || ||||| ||||| ||||| Sbjct 17993 GACGAGAAGCAAACTTATCTCCAAT 18017 >seq2007 Length=108395 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 41116 TGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTC 41175 ||||||||||| | |||| || |||| |||||||| || || || || |||||| Sbjct 94686 TGTATCAAAGAAGTGCTGACGTGTTTTTAGGTGTCCCGTTCAATATTGCTAGCTATGCTT 94745 Query 41176 TGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGT 41235 | | || || |||||||||| | || ||| || |||||||||| | || || | Sbjct 94746 TATTGACACATCTGATTGCACATGAAACGGGATTAGAAGTTGGTGAATTTATCCATACTT 94805 Query 41236 TAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAACTGACACGAA 41295 |||| |||| ||| ||||| |||||| || | | | | ||||||| || | || Sbjct 94806 TAGGCGATGCGCATCTTTACTCAAATCACGTAAAACAAATGAAAGAACAATTGTCTCGTG 94865 Query 41296 AACCTAGACCATTTCCAACGCTA 41318 || | | |||||||| | |||| Sbjct 94866 AAGTTCGTCCATTTCCGAAGCTA 94888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396680553904420