Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ismenius_20[genbank_20GCA_5F001485965.1_202015-12-16] 160,084 sequences; 259,837,422 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq20 286 2e-72 seq48995 129 4e-25 seq32113 122 5e-23 seq16183 104 1e-17 seq22628 95.1 8e-15 seq1641 95.1 8e-15 >seq20 Length=148542 Score = 286 bits (316), Expect = 2e-72 Identities = 365/503 (73%), Gaps = 0/503 (0%) Strand=Plus/Plus Query 90834 GCTACTAAAGGAGATATGATGCATATTCAAGAAGAGCTCATGTACGAAAATGATTTATTA 90893 || || || || ||| ||||||| | || || ||| | |||||||||| || | | Sbjct 28570 GCCACCAAGGGCGATCTGATGCACGTACAGGAGGAGTTGCTGTACGAAAACGACGTGCTC 28629 Query 90894 AAAATGAATATAGAATTGGTTCATGCACACATGAACAAGTTAAATAATATAATACACGAT 90953 ||||||||| | ||| || | || | || || |||||||| || || || | |||||| Sbjct 28630 AAAATGAATCTCGAACTGATGCACGGCCATATCAACAAGTTGAACAACATGTTTCACGAT 28689 Query 90954 CTTATTGTGTCTATAGCAAAAGTGGATGAACGTTTAATTGGAAATTTAATGAACATATCT 91013 || | ||||| | || || ||||| |||||||| || || || | ||||||| || Sbjct 28690 CTGGTCATGTCTGTGGCCAAGGTGGACGAACGTTTGATCGGCAACCTGATGAACAATTCC 28749 Query 91014 GTATCGAGTGTTTTCTTATCGGACGATACATTTTTATTGATGCCCTGTACTAACCCCCCG 91073 || ||| | ||||| |||||||| || ||||| ||||||| || || | ||||| Sbjct 28750 GTTTCGTCGATATTCTTGTCGGACGACACGTTTTTGCTGATGCCGTGCACCACTCCCCCC 28809 Query 91074 CAACACACCAGTAATTGTTATAATAATAGTATTTATAGGGAAGGGAGATGGGTGTTTAAT 91133 ||||| | || ||||| || ||||| || || | || ||| | ||||||| || Sbjct 28810 ACGCACACGAACAACTGTTACAACAATAGCATATACAAAGAGGGGCGGTGGGTGTCCAAC 28869 Query 91134 GAAGACACTTCAGAATGTATCGATTTCAACAATTATAGAGAATTGTCGATCGACGATGAT 91193 | || | ||| | || ||||| || | ||| |||| ||| ||| |||||||||| || Sbjct 28870 GTGGATGCGTCACAGTGCATCGACTTTACCAACTATAAAGAGTTGGCGATCGACGACGAC 28929 Query 91194 ATTGAATTTTGGATTCCAACCATAGGCAACACCACATATCACGACAGTTGGAAGGACGCG 91253 ||||| |||||| | || ||||| |||||||| || | |||||| || ||||| |||||| Sbjct 28930 ATTGAGTTTTGGGTGCCCACCATCGGCAACACGACGTTTCACGAAAGCTGGAAAGACGCG 28989 Query 91254 AGCGGTTGGTCATTTGTCGCACAACAAAAAAGTAATTTGATTATGACAATGGAAAATACA 91313 ||||| ||||| ||| | ||||||||||||| || | ||| |||||||||| | || Sbjct 28990 AGCGGCTGGTCGTTTATAGCACAACAAAAAAACAACCTCATTTCGACAATGGAACAGACC 29049 Query 91314 AAATTCGGTGGTGTCGGAACGAG 91336 || || || || ||||| || || Sbjct 29050 AAGTTTGGCGGCGTCGGCACCAG 29072 Score = 168 bits (186), Expect = 4e-37 Identities = 427/646 (66%), Gaps = 10/646 (2%) Strand=Plus/Minus Query 77390 TGTATTTTTGAAGAAACTCAAGATAAACAAATTCACCGACAACATAGATTATCTCATTTT 77449 ||| || |||||||||||||| | ||||| |||||||||| ||| || ||| | || || Sbjct 87142 TGTGTTCTTGAAGAAACTCAAAACCAACAAGTTCACCGACACCATTGACTATTTGATCTT 87083 Query 77450 ACCAACGTTTGTTTTGTGGGACCACAATTTTCTTGTATTTTTAAACAAAAAGTTTAACAG 77509 ||| ||| | |||||||||||||||||| | | ||| | |||||| ||| ||| Sbjct 87082 GCCACACTTTATATTGTGGGACCACAATTTTGTCATTTTTCTCAACAAAGCGTTCAACTC 87023 Query 77510 CAAA----AAATCTGGTGGAATGGTCAATGTATGGGGATGTATGCAAAAAACACCTTTAA 77565 |||| | | | | | |||| | | | | | ||||||||| | | Sbjct 87022 CAAACACGACAACAGCT----TGGTGGACATTTCGAGCGCCCTGCAAAAAATTAAACTCA 86967 Query 77566 CACAAGGGGTGATAAAAGATTTGATACAGAACAAAAACGGGTACGCGGGCCAATATCTTT 77625 |||| || | || ||||| | |||| ||||||||| ||||| | |||||| | | Sbjct 86966 CACACGGCATCATCAAAGACCAATTGCAGAGCAAAAACGGTTACGCCGTTCAATATTTGT 86907 Query 77626 ACTCCACATTTCTGAATACGAGTAGTTTTTATGGAAATGTACAATGTTTCAACGGTATCA 77685 | || || ||||| || || || |||| || || || ||||| ||||| ||| Sbjct 86906 ATTCGACGTTTCTCAACACCGCCTCCTTCTATGCCAACGTGCAGTGTTTGAACGGCGTCA 86847 Query 77686 ACGAAATAATCCCTCCGCGCGCTAGTATCGAACGTTATTACGGTCGACCAGTGGATAATG 77745 ||||||| | || |||||||| || || | || || ||||| || | |||| || | Sbjct 86846 ACGAAATCGTTCCGCCGCGCGCCAGCGTCAACCGCTACTACGGCCGGCGGGTGGGCAACG 86787 Query 77746 TTCGCGCATGGAACACACGCCATCCAAACATATCACAATTATCGACTCAATTTTCCATCG 77805 | ||||| |||| ||| || || || ||||| || | || || | || || Sbjct 86786 TGCGCGCCTGGACCACGCGACACCCCAACATCAGCCAGCTGAGCACGCAGGTGTCGGACG 86727 Query 77806 TTAAACAAACCGACGATAAAAACGATTGGAATGTAAAAGTGGGTCTGGGCACGTTCGTGG 77865 | | | |||| || | ||||||||| || |||||||| |||||| || || Sbjct 86726 TGCGCCTCAACGACTCCAACACCGATTGGAACGTCAAAGTGGGCTTGGGCATATTTCCGG 86667 Query 77866 GTGCCAACAGAGATTGCGACGGCGATAAGGAGGTGATAACATTTTTACCTAAACCTAATT 77925 | ||||||| |||||||| ||||| || | | || || ||| | || |||| || Sbjct 86666 GCGCCAACACCGATTGCGATGGCGACAAAAAAATCATCACCTTTCTGCCGCAACCCAACA 86607 Query 77926 CGTTGGTGGAGCTAGAGTCGTTGTTGTATTGTGATCCTAAGTATTCATTT-TTATGTTTT 77984 | | || || |||| || ||||| | || || || || |||| |||| || Sbjct 86606 GTCTCATCGACCTGGAGTGTTTATTGTACGGCGACCCGCGGT-TTAATTTCATATGCTTC 86548 Query 77985 GACAAAAACCGTCTTACGTTCGTACCACAACAAGTCGTGTATCTGT 78030 ||||| || || || | ||||| | |||||| | ||||||| Sbjct 86547 GACAAGAATCGACTCAGCTTCGTGTCCCAACAAATTTACTATCTGT 86502 Score = 95.1 bits (104), Expect = 8e-15 Identities = 163/234 (70%), Gaps = 12/234 (5%) Strand=Plus/Minus Query 93507 TAATCTTTAGCGTACACGTCACGCACGTACAACACATCGTCCACCTTATCGTATACCAGT 93566 ||||| | ||||||||||| ||| | |||||||||||||| ||| ||||| |||||| Sbjct 96910 TAATCGCTGGCGTACACGTCGCGCGCAAACAACACATCGTCCTGCTTGTCGTACACCAGT 96851 Query 93567 TGTATGGCTCTATTCACCGCCTTCTCGTCATCGTAATTTCCATATAGAAACATTCG-TTT 93625 || ||||| | ||| | |||||| | ||| || || || | |||||| || || Sbjct 96850 TGGATGGCACGATTGATGTGCTTCTCCTGGTCGACGTTGCCGTACAAAAACATACGCTTG 96791 Query 93626 CATTTTCTTCTCTCGTGCATACTGTTTATCATAAAAGTTATGAATTAAAATGTTATTATT 93685 || | | | ||| || |||| || ||||| || || |||||||| || || Sbjct 96790 CAATGTTT-------TGCGTATAGTTTGTCGTAAAAATTGTGCGCCAAAATGTTGTTGTT 96738 Query 93686 CATCATTATATTGGGAAA--CGAAAAATGTCGACCTTCAATGATAAACGTGCCC 93737 ||| | || |||||||| || ||| ||||| || | || ||||||||| Sbjct 96737 CATGAGAATGTTGGGAAAGCTGAGAAA--CCGACCGTCCAACATGAACGTGCCC 96686 Score = 91.5 bits (100), Expect = 9e-14 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 40939 TGTGGGAACGAGGCTATGAGGATCATTACACATTGGGTCAACAGCTTAGTATCAGGATGA 40998 ||||||| |||||||| ||||| ||||||| | || |||||| | || || | || | Sbjct 101857 TGTGGGAGCGAGGCTACGAGGACAATTACACGCTCGGCCAACAGTTGAGCATTCGCATCA 101916 Query 40999 CTACCAATCTAATACAGAGCGGGTTAGATTTTAAACACCA 41038 | ||||| || |||||||||||||| ||||||||||| || Sbjct 101917 CCACCAAACTGATACAGAGCGGGTTGGATTTTAAACATCA 101956 >seq48995 Length=1108 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||| | || ||||| | ||| ||||| |||||||| || ||||| Sbjct 446 CCACCTCTCAGACGAAGTACTAAATGTAAAGTAGATTCCTTCTGAATGTTGTAGTCTGAC 387 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| ||| | |||||||||||||| || || || || | | ||||||||| || || Sbjct 386 AATGTGCGCCCATCTTCAAGTTGTTTTCCAGCGAAAATGAGCCTCTGTTGGTCTGGGGGA 327 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||| ||| ||| ||||| |||||| | ||||||||| ||| || Sbjct 326 ATCCCCTCCTTATCT-TGAATTTTTGCTTTAACATTTTCAATTGTGTCAGAAGGCTCAAC 268 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || |||||||| || | ||||| |||||||| ||||| Sbjct 267 TTCAAGAGTAATAGTTTTACCAGTAAGAGTTTTTACAAAAATTTGCAT 220 >seq32113 Length=13445 Score = 122 bits (134), Expect = 5e-23 Identities = 169/234 (72%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||||||||| ||||| || ||||| || |||||||| ||||| || ||| Sbjct 7564 CCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGAA 7623 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| | ||| || || || || || ||||| ||||| || || || Sbjct 7624 AGAGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGA 7683 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| ||| ||| | ||| || | ||| || || || || Sbjct 7684 ATGCCTTCCTTGTCT-TGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAAC 7742 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT 34712 ||||| || || |||||||| || | ||||||||||| |||||||| ||||| Sbjct 7743 TTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTTGAT 7796 Score = 98.7 bits (108), Expect = 6e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||| ||||| || ||||| || || ||||||||||| |||||||| || Sbjct 7336 CCGCCACGAAGCCGCAATACTAAATGTAGGGTAGATTCCTTTTGAATATTATAATCAGAT 7395 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || | ||||| |||||||| || ||||| || | | |||||| || || || Sbjct 7396 AATGTACGGCCATCTTCCAGTTGTTTTCCAGCAAAAATCAGCCTCTGTTGATCTGGGGGA 7455 Query 34600 ACTCCCTCCTTGTCTGTGATCTTT 34623 | ||||| |||||| ||||||| Sbjct 7456 ATACCCTCTTTGTCTTGGATCTTT 7479 Score = 89.7 bits (98), Expect = 3e-13 Identities = 155/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||| || || || || ||| || ||||| || ||||| || | || || Sbjct 6661 AGACGAAGCACTAAGTGCAGGGTTGACTCTTTCTGAATATTGTAATCAGACAAAGTGCGA 6720 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | ||| || || ||||| || | ||||||||||| || || | |||||| Sbjct 6721 CCATCTTCCAATTGCTTTCCAGCAAAAATGAGGCGCTGTTGGTCTGGGGGGATGCCCTCC 6780 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC--TTCGCTCTCCACTTCCACG 34665 || ||| || ||| | ||| || | ||||||||| | | ||| ||||||| | Sbjct 6781 TTATCT-TGTATTTTAGCTTTGACATTCTCAATTGTGTCAGATGGTTCT--ACTTCCAGG 6837 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || || || ||||| ||||| || ||||| Sbjct 6838 GTAATGGTCTTTCCAGTCAATGTTTTGACAAATATTTGCAT 6878 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | || ||||| | ||| || ||||| |||||||| || || Sbjct 5968 CCACCACGAAGACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTATAGTCCGAC 6027 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || | |||||||| || || |||| |||||||||||| || || Sbjct 6028 AGAGTGCGGCCATCCTCCAACTGTTTACCAGCGAAGATTAGACGCTGTTGGTCTGGGGGA 6087 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | |||||||||||| |||||| Sbjct 6088 ATGCCCTCCTTGTCTTGGATCTT 6110 >seq16183 Length=3749 Score = 104 bits (114), Expect = 1e-17 Identities = 159/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||||||| || || | ||| ||||| || || ||||| ||||| || || ||| Sbjct 862 AGACGCAACACTAAGTGCAAAGTAGATTCCTTCTGGATATTATAGTCTGACAGCGTGCGC 921 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| ||||| || ||||| || || | | ||||| || || || | || ||| Sbjct 922 CCATCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGAATGCCTTCC 981 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTC-TTCGCTCTCCACTTCCACGGT 34667 |||||| |||||| |||| | ||||| || ||| |||||||||| || Sbjct 982 TTGTCTTGTATCTTTGCCTTTACGTTTTCGATTGTATCAGAAGCT-TCCACTTCCAATGT 1040 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 || ||||| || ||||| ||||| || || || |||||| ||| Sbjct 1041 GATGGTTTTCCCAGTTAAAGTTTTTACGAAGATTTGCATGATGA 1084 >seq22628 Length=16716 Score = 95.1 bits (104), Expect = 8e-15 Identities = 126/173 (73%), Gaps = 4/173 (2%) Strand=Plus/Plus Query 46826 GGATGGCCCGTCAC--TTTTATTACACCCGAAGTGATGGCACGTAACGGATTTTATTATC 46883 |||||||||||||| ||||||| ||||||| | || | || || || ||||||| Sbjct 16456 GGATGGCCCGTCACATTTTTATT--ACCCGAATCACTCGCGAGGAATGGCTTCTATTATC 16513 Query 46884 TTGGAAGAGGTGATGAAGTTCGATGCGCCTTTTGCAAGGTTGAGATCATGCGTTGGGAAG 46943 | || | || |||||||| || ||||| ||||| || || || || ||| |||| | Sbjct 16514 TGGGCCGCGGCGATGAAGTACGCTGCGCGTTTTGTAAAGTAGAAATTATGAAATGGGTTG 16573 Query 46944 AGGGTGATGATCCTGCCGAAGACCATAAACGTTGGGCTCCTCAGTGTCCGTTC 46996 ||| || ||||| ||| | ||||| | || ||||| || ||||| || ||| Sbjct 16574 CGGGCGACGATCCCGCCAAGGACCACCAGCGCTGGGCGCCCCAGTGCCCTTTC 16626 >seq1641 Length=3631 Score = 95.1 bits (104), Expect = 8e-15 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 34472 AATCGTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTAT 34531 ||| || || || | ||| || | ||| | ||| | ||| |||||||||||||| | Sbjct 2392 AATAGTTACCTCCGCGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGT 2333 Query 34532 AATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGT 34591 | || || | ||| || | ||||| ||||||||||| ||||| || ||||| || |||| Sbjct 2332 AGTCAGACAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGT 2273 Query 34592 CCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGC 34651 | || || | || ||||| ||| ||| || ||||| | || || || | Sbjct 2272 CTGGTGGAATACCTTCCTTATCTTGGATTTTAGCTTTTACATTTTCTATAGTATCAGAGG 2213 Query 34652 TCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| || || | ||| || |||||||| || | || || || ||||| ||||| Sbjct 2212 CCTCGACCTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCAT 2158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314115555075572