Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ismenius_20[genbank_20GCA_5F001485965.1_202015-12-16] 160,084 sequences; 259,837,422 total letters Query= NC_028671.1 Length=41307 Score E Sequences producing significant alignments: (Bits) Value seq14859 239 1e-58 seq7607 232 2e-56 seq117586 152 1e-32 seq1820 118 3e-22 seq28223 104 6e-18 seq64495 100 7e-17 seq2007 86.0 2e-12 seq82932 80.6 7e-11 >seq14859 Length=68005 Score = 239 bits (264), Expect = 1e-58 Identities = 300/404 (74%), Gaps = 11/404 (3%) Strand=Plus/Plus Query 34108 GAATTGAACAGCTAGAAAAGAAAGTAGAAAAACATAATGGGGTAATTGAAAGAACCTTTA 34167 |||||||||| | || || ||||| ||||| ||||| | ||||| | || ||| Sbjct 48077 GAATTGAACAATTGGAGAAAAAAGTTGAAAAGCATAACCATATTGTTGAACGTACTTTTC 48136 Query 34168 AATTAGAAGGTCGAATGCAAGAAGCGGAACATGACATAATAGAATTGAAAGGAG-Caaaa 34226 ||||||||| || ||| | |||||||||||||| || ||| ||||||||| | | | Sbjct 48137 TATTAGAAGGACGGATGAATGAAGCGGAACATGATATTCAGGAAATGAAAGGAGGCGAGA 48196 Query 34227 a--aaTGATACTACCAGATAAGTATTATAAAATCATCAAATGGGGAGTGCTAACCGTGCT 34284 | |||||| || ||||||| |||||| |||| || |||||| ||| || || || | Sbjct 48197 AGTAATGATTTTATCAGATAAATATTATCAAATTATTAAATGGACAGTACTTACGGTATT 48256 Query 34285 TCCTGCTAGT-TCTGTTTTAGTAGCAACTTTAGGCAAAGCTTACGGTTGGCAACAAACAG 34343 ||||| ||| || || ||||| ||||| |||||||||| || |||||| | ||||| Sbjct 48257 ACCTGC-AGTGTCGGTATTAGTTGCAACACTAGGCAAAGCATATGGTTGGGGAGGAACAG 48315 Query 34344 ATATGGCTGTTTTAACTATCAATGCCATTGCAACTTTTTTAGGAGTAGTAACAGGTGTGT 34403 ||||| | ||| | ||||||||||| | || || |||||||| ||| |||| ||||||| Sbjct 48316 ATATGACAGTTCTGACTATCAATGCAGTAGCGACGTTTTTAGGTGTAATAACTGGTGTGT 48375 Query 34404 CAGCATATAATTTAAAAGACAAGGAGTAAACGAATGAAAAAGAAAAT--TTTAGTC--GG 34459 | |||||||| |||||| | ||||| || |||||| || ||||| ||| || | Sbjct 48376 CTGCATATAACTTAAAAAAATAGGAGGGAAAAAATGAAGAAAAAAATCATTTTATCATTG 48435 Query 34460 AGCGT--TGATCGCTCTATTTTTTATGCCTTTAAATGTGTTTGC 34501 ||| | | || ||||| ||||| | ||||| |||| ||||| Sbjct 48436 AGCCTACTAATGGCTCTTTTTTTATTACCTTTGAATGCTTTTGC 48479 Score = 196 bits (216), Expect = 1e-45 Identities = 206/271 (76%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 19717 AAGAATTTATTGATAAATGTAAAGAAATTGTTTCAAATTATGCAAACAAACACTTGGATA 19776 || ||||||||| |||||||||| || | || | |||||| || || |||| || | Sbjct 25460 AAAAATTTATTGCTAAATGTAAACAACTAGTAGCTGATTATGTCAATGAAAACTTTGACA 25519 Query 19777 AATCAGATCAAAAAGAAATTACCAAAAAAGATGTTTTTGTAGTTTGGAGTTGTAAAACAT 19836 || ||||||||| | ||||| | || || |||||||| || |||| |||||| |||| Sbjct 25520 AAACAGATCAAATGCAGATTACAACGAATGACGTTTTTGTGGTCTGGACTTGTAAGACAT 25579 Query 19837 TGCAGAATAACAAAGCTCTATTAAGCACTACTTTACTTGATGGTATGTATTATGAATTAA 19896 | || ||||| || ||| ||||||| |||| | | || |||||||| ||||| |||| Sbjct 25580 TACAAAATAATAAGGCTTTATTAAGTACTAATGTTGCAGACGGTATGTACTATGAGTTAA 25639 Query 19897 CATTAAACGGCGACAAGCAAGAGATTTATTTTGATGCATACAAAAAATGGGAAAATAAGG 19956 | | ||||| ||||| ||| || |||||||||||||| |||||||||||||| || | Sbjct 25640 CGTATAACGGAGACAAATCAGAAATCTATTTTGATGCATATAAAAAATGGGAAAACAAAG 25699 Query 19957 CAATTAAAGTCTAACAAACGTTAGGCTTTTT 19987 | || |||||||| | | |||||||||| Sbjct 25700 CGATCAAAGTCTAGTAGATACTAGGCTTTTT 25730 Score = 170 bits (188), Expect = 5e-38 Identities = 159/201 (79%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 92 TTATTTGAACAAATCCCAAAAGCTAAAAGTTGTTTTATTATATACTTTATTATACATAGC 151 |||||| || || |||||||||||| | || || || ||||| | |||||| || ||| Sbjct 12081 TTATTTAAATAAGTCCCAAAAGCTATACGTAGTCTTTTTATAAATTTTATTGTATGCAGC 12140 Query 152 TTTCTTGGGGTTCTTAATGAAACCAGTTCCTTTTTGCCCATAACCAGGAATTACTGCTTT 211 ||| ||||| | ||||| | |||| ||||| | |||||||||||||| |||||||| Sbjct 12141 TTTTTTGGGTCT-TTAATCCATCCAGAGCCTTTCTTGCCATAACCAGGAATCACTGCTTT 12199 Query 212 TTTAAACTTACGTTTAGCTTTTCCAGTAGTACGAGCACTTATTGAtttttttATACTTGG 271 ||| | || | ||| || ||||||||||| | ||| || || ||||||||||||||||| Sbjct 12200 TTTTATTTTCCTTTTTGCCTTTCCAGTAGTTCTAGCGCTAATAGATTTTTTTATACTTGG 12259 Query 272 TTTACGCATTCCTACTTTCAT 292 ||| | |||||||| |||||| Sbjct 12260 TTTTCTCATTCCTATTTTCAT 12280 Score = 80.6 bits (88), Expect = 7e-11 Identities = 85/111 (77%), Gaps = 1/111 (1%) Strand=Plus/Plus Query 41196 TTATTTGAACAAATCCCAAAAGCTAAAAGTTGTTTTATTATATACTTTATTATACATAGC 41255 |||||| || || |||||||||||| | || || || ||||| | |||||| || ||| Sbjct 12081 TTATTTAAATAAGTCCCAAAAGCTATACGTAGTCTTTTTATAAATTTTATTGTATGCAGC 12140 Query 41256 TTTCTTGGGGTTCTTAATGAAACCAGTTCCTTTTTGCCCATAACCAGGAAT 41306 ||| || |||| ||||| | |||| ||||| | |||||||||||||| Sbjct 12141 TTT-TTTGGGTCTTTAATCCATCCAGAGCCTTTCTTGCCATAACCAGGAAT 12190 Score = 80.6 bits (88), Expect = 7e-11 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 37523 ACCATTAGCTCAGCTGGTTAGAGCAAACGGCTCATAACCGTTCGGTCACAGGTTCGAGTC 37582 ||| ||||||||| |||| |||||| |||| |||||||||| ||||| ||||||||||| Sbjct 49952 ACCCTTAGCTCAGTTGGTCAGAGCAGACGGATCATAACCGTCCGGTCGTAGGTTCGAGTC 50011 Query 37583 CTGTATGGTCCATA 37596 || | ||| |||| Sbjct 50012 CTACAGGGTACATA 50025 >seq7607 Length=81728 Score = 232 bits (256), Expect = 2e-56 Identities = 234/299 (78%), Gaps = 14/299 (5%) Strand=Plus/Minus Query 19980 GGCTTTTTATATTGCCTTCTTACTGCTTACAGGCACTAAAGAGAAAGCTGTTTCGATTGA 20039 |||||||||| ||||||||| |||||||||||||||||||||||||||||| ||| ||| Sbjct 64043 GGCTTTTTATTATGCCTTCTTCCTGCTTACAGGCACTAAAGAGAAAGCTGTTCCGACTGA 63984 Query 20040 TAGGCGTAACTTATCAAATATATCGGGTAGCGGCGTAACCGTGGAGGA-TAATCATGAAA 20098 ||||||||| | |||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 63983 CTGGCGTAACTAGTTAAAT-TATCGGGTAACGGCGTAACCGTGGAGGACTAATCATGAAG 63925 Query 20099 ACaaaaaaaCTATTATTGCCAATGCATTTACAATTCTTTGCTGATAATCCAGATACTGGC 20158 | |||| ||||| |||| ||| || |||||| ||||||||| |||||||| |||| Sbjct 63924 AAAAAACGTTTATTAATGCCTATGAATCTACAATACTTTGCTGAAAATCCAGAGGGTGGC 63865 Query 20159 ACTGGAGATACGGACCAACCGGCCGGAGGTCAAGAACAAACGCCACCAGAAGATGATAGT 20218 | | ||||| ||| ||||| || | || | |||||||| |||| | | Sbjct 63864 AAT---GATAC--ACC-----GCCGGCGG--ATGAGAAGACGCCACCTGAAGGTAAACAA 63817 Query 20219 AAAGATAAAGGCAATGGAAAAACGTTTTCTCGTGATGAAGTAGCAAAAATGATTGCTGC 20277 | | | ||| | ||| ||||| ||||||||||| || ||||||||||||||||| || Sbjct 63816 CAGGGTGAAGAGACTGGCAAAACATTTTCTCGTGACGACGTAGCAAAAATGATTGCCGC 63758 Score = 165 bits (182), Expect = 2e-36 Identities = 254/358 (71%), Gaps = 17/358 (5%) Strand=Plus/Minus Query 12585 aaaaaaaGTCGGAATCGCTCCGACC---------AACC--ACATTGATATTATAACATAA 12633 |||||||| |||| |||||||||| |||| ||| ||||||| || || Sbjct 72529 AAAAAAAGCCGGA-TCGCTCCGACTGATGTAATAAACCCGACAAGTTTATTATATCACAA 72471 Query 12634 AA-GGAGCGATTTAACTTGATTCAATTGTTAAAAGAAGTTGATTTCAGTCAGACTAGAGC 12692 || |||||| ||| |||| || ||||| ||| ||| || || || || ||||| ||| Sbjct 72470 AAAGGAGCGGTTTGACTTAATGCAATTAATAAGAGATGTAGACTTTAGGCAGACAAGATG 72411 Query 12693 CAATGCGAGAGCCGTGTTGAAAAATTTTAGACGTTTGGACCGAATAGCTGGTCGTTCCTT 12752 |||||||||| ||||||||||| || |||| ||||| || || || |||||||| || Sbjct 72410 TAATGCGAGAGATGTGTTGAAAAACTTCCGACGGTTGGAACGGATGGCAGGTCGTTCATT 72351 Query 12753 AGTAGATGTTCGGTCGCCAATAATTACAGACATGCCCAAAGGT--ATGAAGCATGGCAAC 12810 |||| || |||||| || || || |||||||| |||| || || |||||| Sbjct 72350 GATAGACATTAAGTCGCCGATTATAACTGACATGCC--TAGGTCGCCAAAACACGGCAAC 72293 Query 12811 AAAGCCGAAGATGCGTTGATCCAGATGATTGATGTCGAAGTAGAGCGTGATGCAATCCTA 12870 ||| | ||||||||| | || || || || || | |||| ||| | ||||| || || Sbjct 72292 AAAACAGAAGATGCGCTTATTCAAATAATGGACCTAGAAGCAGAAAGAGATGCGATTTTA 72233 Query 12871 ACGGCTTTGATGTCACTAAGCATTATAAGTCGTCAAATTCTTCACTACAGTTTTTGCG 12928 || ||||| | || |||| ||||||||||| || | || |||||||||| Sbjct 72232 GTAGCCCTGATGAGTTTGAGTCTTATCAGTCGTCAAATACTCTATTATAGTTTTTGCG 72175 Score = 104 bits (114), Expect = 6e-18 Identities = 216/319 (68%), Gaps = 2/319 (1%) Strand=Plus/Minus Query 25215 GGAGCGATTAACCGTTTTGATACATTGAATAAGTATCCTGTAGTTATGAAGGCTTTAGGT 25274 ||||| ||| | ||||| ||||||||||| |||| || | ||| | | || Sbjct 58699 GGAGCCATTGATCGTTTCGATACATTGAAACAGTACCCAAACATAATGCGGCAACTGGGA 58640 Query 25275 TATTCTACTGAAGATGTTGATAGATCAATGACTAAGTTAAGTGATGGGATTGATGGACTT 25334 ||||| ||||| || || || |||||||||||| |||| ||| || || || || | Sbjct 58639 TATTCAACTGACGAAGTAGACCAATCAATGACTAAATTAACTGAAGGAATCGACGGTTTG 58580 Query 25335 CCTACATCTTTAGATGAAATTGTATCAAATACACAACAATTAGCAATTTCAACTGGTAGC 25394 || || | ||||| || |||||| |||| ||||| ||| | || | ||||| || Sbjct 58579 CCAACTACGTTAGACGATATTGTAAAAAATGCACAAAGTTTAACGATGACCACTGG-AGA 58521 Query 25395 TTGAG-TAAAGGGACTGACACAGCTATTGCATTAAATGATGCCTTTCTTGCTTCTGGAGC 25453 || || |||||||| || |||| || || ||||| |||| || | || ||| || Sbjct 58520 TTTAGACAAAGGGACAGAATCAGCAATCGCTTTAAACAATGCGTTCTTGGCCAGTGGTGC 58461 Query 25454 TTCAACTGCTGATGCAACTCGTGGTATGCAACAATATATTCAAATGCTCGGTAAAGGTGA 25513 |||| ||||||| | || | ||||||| || ||| | | ||| || | Sbjct 58460 AAGTTCTGCAGATGCAAGCAGAGGGCTAACTCAATATACCCAGATGTTGGCTAAGGGCAA 58401 Query 25514 AGTTGATATGCAATCTTGG 25532 ||||| |||||||| ||| Sbjct 58400 GGTTGACATGCAATCATGG 58382 Score = 86.0 bits (94), Expect = 2e-12 Identities = 123/168 (73%), Gaps = 14/168 (8%) Strand=Plus/Minus Query 6496 AAGAAAAAGCGTTGACCATACAGAATACACTTACGCTGGTTTGTGCCGATGCCATCACAC 6555 ||||||| |||| ||| ||||||||||||| | || | ||| || ||| ||||| Sbjct 81707 AAGAAAA----TTGATCATTCAGAATACACTTATTCAGGACTTTGCAGAATCCACCACAC 81652 Query 6556 AGAAAAACA-CAACATTGGT---ATTACAGCATTT-AAGAAAAAATATCATGTTAAAGGA 6610 |||||||| |||| | ||| |||| |||| || || |||||||| | ||||| Sbjct 81651 GGAAAAACATCAAC-TAGGTGTGATTA----ATTTCAAAAATAAATATCAAATCAAAGGG 81597 Query 6611 ATTAAATTAAATCAAGATACCATCAAGAAATTACACATAGGAGGATAA 6658 ||||| ||||| ||||| || ||||| | || | || ||||||||| Sbjct 81596 ATTAAGTTAAACCAAGAAACAATCAAACGACTAAAAATTGGAGGATAA 81549 >seq117586 Length=260 Score = 152 bits (168), Expect = 1e-32 Identities = 183/243 (75%), Gaps = 8/243 (3%) Strand=Plus/Minus Query 6242 TTTGAAGC-GTTACAGGGCTATGAAATTAGCCTCAGAAACGACTCAACGAACACAA-TGG 6299 ||||||| || ||||||| | |||| ||||||| |||| || | | |||| || Sbjct 260 TTTGAAGGTGTCACAGGGCGAA-AAATAAGCCTCAAGGACGAATC---GGATACAACTGT 205 Query 6300 ACG--ATGCAACCATTTTAGCGAACATCATCTTGAATTTCATTTTTGAAAATAATATTCC 6357 | | | | || ||| |||| || |||||||| ||||||| |||||| || ||||||| Sbjct 204 AAGTGACGTAAACATCCTAGCAAATATCATCTTAGATTTCATCTTTGAACATCATATTCC 145 Query 6358 ATTTCGCAATGGGTATGACATTTTACCAGCAAATCAAGAATATTACTTTTACAAATGTAT 6417 ||| | || ||||| ||||||||||| ||||||||||| || || ||||||||||| Sbjct 144 ATTCAAAGAAGGTTATGAGATTTTACCAGCGAATCAAGAATACTATTTCTACAAATGTAT 85 Query 6418 AACTAACCGAGTTTGTTGCATATGTGGCAAAACTGGTGCAGATATTGACCATTTCGACAA 6477 || || |||||||||| || ||||| | ||| || || || ||||| ||||| || || Sbjct 84 TACCAAAAGAGTTTGTTGTATCTGTGGAAGAACAGGAGCTGACATTGATCATTTTGATAA 25 Query 6478 AGC 6480 ||| Sbjct 24 AGC 22 >seq1820 Length=163924 Score = 118 bits (130), Expect = 3e-22 Identities = 114/146 (78%), Gaps = 3/146 (2%) Strand=Plus/Plus Query 12943 TCTAATTACAAGATTGCTAGAGAAGTCGGCTATTCCGAAAGAAGTATTCAACGCATGAAA 13002 || ||||| |||||| | ||| |||| ||||||||||||| ||||| | | ||| Sbjct 6545 TCGAATTATAAGATTAGTCTTGAAATCGGTTATTCCGAAAGAACGATTCAGAGAAAAAAA 6604 Query 13003 TCAGAAGCTTTGATTGAATTTGCTGAAGCTTATCGAAATGGAAAAATAATTGCCTATAAA 13062 ||||||| ||||||||||| |||||||| ||| | ||||||| | ||||| |||||| Sbjct 6605 GCAGAAGCATTGATTGAATTCGCTGAAGCATATAAGACTGGAAAACTGATTGCGTATAAA 6664 Query 13063 TAAAATTTTGGCGGTTTTTTGGCGGA 13088 ||| ||||||| ||||||||| || Sbjct 6665 TAA---TTTGGCGTTTTTTTGGCAGA 6687 >seq28223 Length=7146 Score = 104 bits (114), Expect = 6e-18 Identities = 126/169 (75%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 6492 GGAAAAGAAAAAGCGTTGACCATACAGAATACACTTACGCTGGTTTGTGCCGATGCCATC 6551 ||||| | |||| |||| ||| |||||||||||||||| || | || || ||||| Sbjct 14 GGAAACGTAAAAAAATTGATCATTCAGAATACACTTACGCAGGACTTTGTAGAATCCATC 73 Query 6552 ACACAGAAAAACA-CAACATTGGTATTACAGCATTTAAGAAAAAATATCATGTTAAAGGA 6610 |||| |||||||| |||| | ||| | || ||||| || || || || | ||||| Sbjct 74 ACACGGAAAAACATCAAC-TAGGTGTAACTAATTTTAAAAATAAGTACCAAATCAAAGGG 132 Query 6611 ATTAAATTAAATCAAGATACCATCAAGAAATTACACATAGGAGGATAAA 6659 ||||| ||||| |||| || || |||||| | |||||||||||||| Sbjct 133 ATTAAGTTAAACGAAGAAACAATTAAGAAACTTGGCATAGGAGGATAAA 181 >seq64495 Length=424 Score = 100 bits (110), Expect = 7e-17 Identities = 70/80 (88%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 37521 GGACCATTAGCTCAGCTGGTTAGAGCAAACGGCTCATAACCGTTCGGTCACAGGTTCGAG 37580 ||||| ||||||||| ||||||||||| ||||||||||||||| ||||| ||||||||| Sbjct 311 GGACCTTTAGCTCAGTTGGTTAGAGCAGACGGCTCATAACCGTCCGGTCGTAGGTTCGAG 370 Query 37581 TCCTGTATGGTCCATAACGA 37600 |||| | |||||||| ||| Sbjct 371 TCCTACAAGGTCCATAGCGA 390 >seq2007 Length=108395 Score = 86.0 bits (94), Expect = 2e-12 Identities = 210/313 (67%), Gaps = 8/313 (3%) Strand=Plus/Plus Query 4497 AATGAATTTCCAATATGCAACTCTAAAAGCGATTGAAGAAGCAATTAGAAAAGCTGCACA 4556 |||||| || | || ||||| || ||| | |||||| ||| || ||||| ||||| || Sbjct 106609 AATGAAATTTGAGTACGCAACACTTAAATCTATTGAATCAGCTATAAGAAATGCTGCTCA 106668 Query 4557 AGAATCCGAAAGCGGAATTGATTTTCAACAAAATGTCGT--CAA-TGAGAATAATGCGTT 4613 ||| || || || || ||||||||| ||| |||| || ||| ||| || ||| | Sbjct 106669 AGAGTCTGATAGTGGGATTGATTTTGGTCAAGATGTAGTTACAAGTGATAACCATG---T 106725 Query 4614 AAAAGTCACAACAATTATTACTCATGTTAGCGGTCAATATATCATTCATGGACCTTTTGA 4673 ||| ||||| || |||| ||||||||||| || | |||| ||||| | Sbjct 106726 TGCAGTAACAACGTGCGTTTATCATTCAAGCGGTCAATACATTCTATATGGTCCTTTAGG 106785 Query 4674 ATTTCCAAACAGTGGCACCAATCCGCAAGGGCTAGGAAGCTTAACAACTTATGCAAGACG 4733 ||||| | | | ||||| ||| |||| || ||| |||||||||| | | Sbjct 106786 CTTTCCGTGTAATACAAAAAATCCACAATCTTTAGGTAGTGTAATTACTTATGCAAAAAG 106845 Query 4734 TTACTCTTTGTCT-GCTGCTTTTGGAATTGCTGCAGATAAAGACGATGATGGCCAAACAG 4792 || || || || ||| | |||||| ||| |||||| || ||||| | | ||| | Sbjct 106846 GTATTCGCTGGCTAGCT-CATTTGGAGTTGTCGCAGATGGGGATGATGACGCCAAAATTG 106904 Query 4793 CAGCTGAAAAGAA 4805 ||||| |||| Sbjct 106905 GTGCTGATGAGAA 106917 >seq82932 Length=3722 Score = 80.6 bits (88), Expect = 7e-11 Identities = 67/81 (83%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 37524 CCATTAGCTCAGCTGGTTAGAGCAAACGGCTCATAACCGTTCGGTCACAGGTTCGAGTCC 37583 || ||||||||| ||||||||||| ||||||||||||||| |||| ||||||||| || Sbjct 320 CCCTTAGCTCAGTTGGTTAGAGCAGACGGCTCATAACCGTCTGGTCGTAGGTTCGAGACC 261 Query 37584 TGTATGGTCCATA-ACGAAAA 37603 | | ||| |||| || |||| Sbjct 260 TACAGGGTACATATACCAAAA 240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 131809752749352