Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ismenius_20[genbank_20GCA_5F001485965.1_202015-12-16] 160,084 sequences; 259,837,422 total letters Query= NC_028700.1 Length=37976 Score E Sequences producing significant alignments: (Bits) Value seq1464 199 1e-46 seq7607 172 1e-38 seq14859 87.8 4e-13 >seq1464 Length=66918 Score = 199 bits (220), Expect = 1e-46 Identities = 236/317 (74%), Gaps = 2/317 (1%) Strand=Plus/Plus Query 9195 TGATTAATAATGTAGTACTAGTTGGTCGCATGACCAAGGACGCAGAGCTTCGCTATACAG 9254 |||||||||| || ||||||||||| || |||| || || |||| | || |||||| Sbjct 17855 TGATTAATAACGTTGTACTAGTTGGACGTCTGACAAAAGATCCAGATTTACGATATACAT 17914 Query 9255 CGAGTCAAGTAGCTGTAGCTACGTTCACACTTGCGGTAAACCGCAGATTTAAAGAG-CAA 9313 | ||| |||||||| |||||||| | || || || || | | || | ||| ||| Sbjct 17915 CAAGTGGCACTGCTGTAGCAACGTTCACTTTAGCTGTCAATCGTA-ACTTCACGAGCCAA 17973 Query 9314 AACGGGGAGAGAGAAGCAGATTTCATTAATTGTGTTATCTGGCGACAGTCTGCTGAAAAT 9373 ||||| | | || || ||||| ||||||||||| || |||||| | || || |||| Sbjct 17974 AACGGCAACCGTGAGGCGGATTTTATTAATTGTGTGATTTGGCGAAAATCAGCAGAAACA 18033 Query 9374 TTAGCCAACTGGGCTAAAAAAGGTGCTTTGATCGGAGTTACGGGTCGTATTCAGACACGT 9433 |||| |||| || | ||||| || | | || || || ||||||||||| || ||| Sbjct 18034 CTAGCAAACTATGCACATAAAGGAACTCTTTTAGGTGTAACTGGTCGTATTCAAACGCGT 18093 Query 9434 AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGAGAACTTC 9493 || || || ||||||||||||||||| || ||||||||||| ||||| || |||||| Sbjct 18094 TCTTATGATAATCAACAAGGACAACGTGTGTACGTAACAGAAGTAGTTGCTGAAAACTTC 18153 Query 9494 CAAATGTTGGAAAGTCG 9510 ||| | ||||||||||| Sbjct 18154 CAATTATTGGAAAGTCG 18170 >seq7607 Length=81728 Score = 172 bits (190), Expect = 1e-38 Identities = 285/409 (70%), Gaps = 7/409 (2%) Strand=Plus/Minus Query 11895 AAAATTTTAGATGCTTGTTGTGGAAGTCGCCTATTTTGGTTTGATAAAAACGAACCTCAC 11954 ||||| |||||||| ||||| |||||||| | || ||||| |||||| | | Sbjct 76215 AAAATATTAGATGCGTGTTGCGGAAGTCGTTTGTTCTGGTTCGATAAAGATTGTAGTTTT 76156 Query 11955 ACAACTTTTATGGACGTCAGACAAGAAAAATTTGAGATGCACGGCaaaaaaaTCAATGTC 12014 |||| | |||||| | ||| ||||| | | ||||| || || || ||||||||||| Sbjct 76155 GCAACGTATATGGATATAAGAGAAGAAGAGTACGAGATCCATGGAAAGAAAATCAATGTG 76096 Query 12015 AACCCTGATGTAATTGGTGATTTTCGTGATATGCCTTTTGAAAGTAATAGCTTTA--ACC 12072 || || ||||| | | ||| ||| | || || |||||||||| |||| |||| | Sbjct 76095 AAACCAGATGTTGTAGCTGACTTTAGAGACATACCTTTTGAAAATAATG--TTTACGATT 76038 Query 12073 TGGTTGTCTTCGACCCGCCACACTTAAAATATGTTGGACAAAACTCAATTATGAAAGCTC 12132 | ||||| || || || ||||| || |||| | ||| || || ||||||||||||| | Sbjct 76037 TAGTTGTATTTGATCCACCACATTTGAAATGGGCTGGCCAGAATTCAATTATGAAAGGAC 75978 Query 12133 AGTATGGCCAACTTGATAAAGAAAACTGGAAAGAAGATATTTCAAAAGGTTTCGAAGAGT 12192 | || || || || || ||||| | |||| ||||||||| | | ||| | ||||| Sbjct 75977 AATACGGACAGCTAGACAAAGATACCTGGCCAGAAGATATAAAACAGGGTATGTCAGAGT 75918 Query 12193 GTATGAGAGTTCTAAAAGTAGGAGGAACTTTAGTTTTTAAATGGTCTGATTGCCAGGTTA 12252 ||||| | ||| |||| ||||| || |||| |||||| ||| |||||| | Sbjct 75917 GTATGCGTGTTTTAAAGCCCAACGGAACATTGATTTTCAAATGGAATGAGAACCAGGTAA 75858 Query 12253 ATGTAAGAGAAGTTTTGTCAGCAATT---CCATTTAAACCGCTTTTTGG 12298 | | | ||| ||||| | ||||| ||||| | ||| | ||||| Sbjct 75857 AACTCAAAGATGTTTTAAAATCAATTGAACCATTCAGACCTTTGTTTGG 75809 >seq14859 Length=68005 Score = 87.8 bits (96), Expect = 4e-13 Identities = 128/179 (72%), Gaps = 4/179 (2%) Strand=Plus/Plus Query 9194 ATGATTAATAATGTAGTACTAGTTGGTCGCATGACCAAGGACGCAGAGCTTCGCTATAC- 9252 ||||||||||| || ||| |||| || || | || |||||| |||| | | |||| Sbjct 19978 ATGATTAATAACGTTGTATTAGTGGGACGGTTAACTAAGGACCCAGACATAAGAAATACT 20037 Query 9253 -AGCGAGTCAAGTAGCTGTAGCTACGTTCACACTTGCGGTAAACCGCAGATTTAAAGAGC 9311 | | || | | | | |||| || ||||| ||||| ||||| | |||||||| | Sbjct 20038 CAACAAGGAACGACGATC--GCTAGTTTTACACTAGCGGTCAACCGTAACTTTAAAGACC 20095 Query 9312 AAAACGGGGAGAGAGAAGCAGATTTCATTAATTGTGTTATCTGGCGACAGTCTGCTGAA 9370 |||| || || | ||||||||||| |||||||||||| ||||| || | |||||| Sbjct 20096 AAAATGGAAAGCGTGAAGCAGATTTTATTAATTGTGTTGCTTGGCGTAAGACAGCTGAA 20154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 121170815861904