Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ismenius_20[genbank_20GCA_5F001485965.1_202015-12-16] 160,084 sequences; 259,837,422 total letters Query= NC_028826.1 Length=42265 Score E Sequences producing significant alignments: (Bits) Value seq640 275 2e-69 seq7607 118 3e-22 >seq640 Length=68089 Score = 275 bits (304), Expect = 2e-69 Identities = 404/569 (71%), Gaps = 2/569 (0%) Strand=Plus/Minus Query 13386 ACATTAGCAGGAGTAATTGGGGTAGGTAAATCCTCAATGACAAAATTATTAAGCGAATTA 13445 || || ||||| || || || || || || || ||||||||| | ||| || | Sbjct 11902 ACGTTGGCAGGTGTTATCGGTGTGGGCAAGTCTTCAATGACAGCCCTTTTAGCAGAGGCA 11843 Query 13446 TTAGAAACCAAAGCAGTTTATGAACCAGTGGAGGAAAACCCTCTACTGGAAAAGTTCTAC 13505 ||||| || || || || ||||| || | || | ||| | | || ||||| Sbjct 11842 TTAGACACAAAGGCGGTGTATGAGCCTATTGAAAACAACGAGTTGTTAGAGCTTTTCTAT 11783 Query 13506 ACAGACAAGAAAAAGTATGGCTTTCTATTTCAGATTGATATGTTATCCAAGCGTTTTGAA 13565 |||||| |||||||||| || | ||||| || || ||| | ||||| ||| Sbjct 11782 CAGGACAAGGAAAAGTATGGATTCGTCTTTCAAATAGACATGCTGAGTCGCCGTTTCGAA 11723 Query 13566 CTTATTCAGGAGGCTATGAGTGTTAAAAATGGAATCCTTGATCGTTCAATTTATGAAGAT 13625 |||||||| ||||||||||||||||| | || ||| | || || || |||||||| ||| Sbjct 11722 CTTATTCAAGAGGCTATGAGTGTTAAGCACGGCATCTTAGACCGCTCCATTTATGAGGAT 11663 Query 13626 TCAATCTTTTTAAAGCAGTTATATGATGAAGGTGCTGTAGATAAATTAGAGTTAGATGTG 13685 | ||||| | | || | ||||||||||||||||| ||| | ||| ||| | | Sbjct 11662 GCTATCTTCCTTGACCAACTCTATGATGAAGGTGCTGTCACTAAGGTGGAGAAAGAGGCG 11603 Query 13686 TAT-ACAAAGTTATTAAATCGCATGTTAAAAGAATTAGAACCTTTACCTAAGAAATCACC 13744 || || || | | |||||| | ||||| ||||| || | |||||||| || || Sbjct 11602 TACCACCGCCTTGCTTCA-CGCATGCTTAAAGAGTTAGAGCCCCTTCCTAAGAAGTCTCC 11544 Query 13745 AGATTTGATGATTGTTTTAAATTGTAGTTTTGAAGAAGAAATCAAGCGTATTAATAAACG 13804 ||| ||||||| |||||||| ||| |||||| ||||| || |||||||||||| ||| Sbjct 11543 AGACATGATGATAGTTTTAAACTGTTCTTTTGAGGAAGAGATTAAGCGTATTAATGCACG 11484 Query 13805 AGCAAGAGAATTTGAGAAGGTTGAAGAAGGCACTGAACTATATAAATACTTCAGAGACCA 13864 || ||||||||||| ||||| ||||||||||| || || ||| ||||||| ||| |||| Sbjct 11483 TGCCAGAGAATTTGAAAAGGTGGAAGAAGGCACAGAGCTTTATGAATACTTTAGAAACCA 11424 Query 13865 TCACGCTAATTATCAAGACTGGATGGCTAAAGATTTAGGCTTCCCTAAATTAATTATAGA 13924 || | || ||||| | ||||| ||||||||||| |||||||| || | | || Sbjct 11423 CCATGAAAACTATCAGAAATGGATTCAGAAAGATTTAGGATTCCCTAAGTTGGTGTTGGA 11364 Query 13925 TGTAACAGAACTTGACTATGTTAATAACC 13953 ||| || | | |||| ||||| |||| Sbjct 11363 TGTTACTCACATGGACTTTGTTAGCAACC 11335 Score = 197 bits (218), Expect = 4e-46 Identities = 381/548 (70%), Gaps = 18/548 (3%) Strand=Plus/Plus Query 15188 CTTTCTTATTTCTTTGGTTCTGTATAGTTCAATGCTTTTTCACTATCTGTAATGCCTTTA 15247 |||||| |||| || |||||||| | ||||| |||||||| || | ||||| Sbjct 36207 CTTTCT-ATTTACGAGGCTCTGTATAAGAAAGAGCTTTGTCACTATCAGTTAGTCCTTTG 36265 Query 15248 GTTGTTGGGTCTGGAATCATGTTCAACGCATTAATCACAGTTAAGCCCAATACGTATGGA 15307 || |||||||| |||| |||||| | ||||| || || || || || |||||||| ||| Sbjct 36266 GTAGTTGGGTCAGGAACCATGTTAAGGGCATTGATTACCGTCAAACCTAATACGTAAGGA 36325 Query 15308 TTACTTACTGCTCTGACTAAC-ACATCCAATAATGTATCAAAAGATGTAATATCTTCAAA 15366 || || || || || || || |||||||| || |||||||| || || || || || || Sbjct 36326 TTGCTGACAGC-CTTACCAAGTACATCCAACAACGTATCAAACGAGGTGATGTCCTCGAA 36384 Query 15367 CTTCAAACCAAAGTATGCTAAAATTGGAATGGCTAATGCGCCTACGAAACGTAAAATAAA 15426 |||||| |||||||| |||| ||| |||| ||| || ||||||||||| || || || Sbjct 36385 CTTCAAGCCAAAGTACGCTAGAATAGGAACTAATAAAGCCCCTACGAAACGCAAGATGAA 36444 Query 15427 TGTTAGGTTGTCTTTGCTAAAACGAACTTTCCAGTTTAtttttttC-ATTCTACATCA-- 15483 || | ||| | ||||||||||| ||| ||||||| || || ||| | ||| |||| Sbjct 36445 GGTGATGTTCTGCTTGCTAAAACGCACTCTCCAGTTAATATTATTCAAATCT--ATCAAT 36502 Query 15484 CTCCTATTTCATAAATAAGGATAAACCAATACT-AACTAATG---CTCCAATAACTGCGC 15539 ||||||| | ||||| | | ||||||| |||| || | ||| || | Sbjct 36503 CTCCTATCCTACAAATA--CTTTTATCAATACTGTTGCAATGGAAGTC--AGAACCGCCC 36558 Query 15540 CAACAGTTGTACGTGTTAGCCATGTATAGCTGTTTTTGAGGTCAGCTAAT-GCCTCTCTA 15598 | || || | ||||||| ||| | |||||| || | | || |||||||| Sbjct 36559 CTACCACTGCTCTACTTAGCCAATCATACTTAGATTTGAGTTC-GTTGATCGCCTCTCTG 36617 Query 15599 TTCTGCATGGACATGCTGTAAGCCTTATCTGCTTTCTCAGATTGGCGTTCTAAGCGACTA 15658 || || ||| | ||||| || || || |||||||| || ||||| || | | | Sbjct 36618 TTACTCAAACCCATCGTATAAGCTTTGTCAGCCTTCTCAGACTGCCGTTCCAACCTAATG 36677 Query 15659 CCATACTCTTTCAAGTCAGCTTTAATCTCAGGTATATCATCCAACTTTACCTCAATTCTT 15718 | |||||||| ||||||||||||| || || || | ||| | ||||| | Sbjct 36678 GAAGTGTCTTTCAAAGACTCTTTAATCTCAGGAATGTCGTCAAGCTTAGCTTCAATACGG 36737 Query 15719 GCTAACTG 15726 |||||||| Sbjct 36738 GCTAACTG 36745 Score = 161 bits (178), Expect = 3e-35 Identities = 269/384 (70%), Gaps = 15/384 (4%) Strand=Plus/Plus Query 14151 TTATAGACTCAAATAGATACTATCAATTCTCACATCGTTTACAGCGCCTTCGCCGTT--- 14207 |||||| || ||||| || | || | |||||||| |||| || ||||| Sbjct 35222 TTATAGGCTTAAATAAATGTCGTTGATACGGACATCGTTAACAGGTGACTCACCGTTCTT 35281 Query 14208 AGCTTTATTCGCTCTACGCAAGATAACATCTACTTTTTTACCTTTGAACTGAGCTTTCTT 14267 | | || || || | || ||||| |||||||| || ||||||||||| || ||||| Sbjct 35282 ACCGTTGTTTGCACGGCGTAAGATGACATCTACCTTCTTACCTTTGAATTG---GTTCTT 35338 Query 14268 ---AACAGTTACGTCAAAACCAAGCTCTTGTCCACCTTGATAGCCGTATGCTTTCTTAAC 14324 ||||||||||||||| || | | | | ||| ||||| || || || || |||||||| Sbjct 35339 GCCAACAGTTACGTCAAAGCCTAACGCATCTCCGCCTTGGTAACCATAAGCCTTCTTAAC 35398 Query 14325 GTCTGGTCGTTTAATACCAGCGGATTGAACACGTGTCAACTCTTTACCAGTGCCATGTTG 14384 |||||| || |||||| ||| || || ||||| | |||||| | ||| ||||||| Sbjct 35399 GTCTGGGCGAGCAATACCTCGGGACTGCACTCGTGTAAGCTCTTTGCTAGTTCCATGTTC 35458 Query 14385 CATAAAGATGACATATGCATATTTTCCAATTGAACCTTGTGGTTTGTCTGGAACTAGCCA 14444 ||| || | || | || | ||||||| || | ||||| || || |||| ||| Sbjct 35459 CATGAACAATACCCAAGCCGTTGAACCAATTGCTCCATTAGGTTTATCGGGGACTAACCA 35518 Query 14445 ACCAGCCACACGAATTTGGTCTTT--GC-CATGACCATTAAAGTAATCAAGTTTACCCCA 14501 ||||| || | ||| || | || || | | || | | | ||||| |||||||| Sbjct 35519 TCCAGCTACTCTAATCTGCCCCTTAGGCTCTTCACGGT---ACTTGTCAAGCTTACCCCA 35575 Query 14502 CGCATTACCTTGGTGTTTAGGTTT 14525 ||||| ||||||||||||||||| Sbjct 35576 AGCATTTCCTTGGTGTTTAGGTTT 35599 Score = 140 bits (154), Expect = 9e-29 Identities = 244/352 (69%), Gaps = 6/352 (2%) Strand=Plus/Plus Query 17104 CCTTGTCTAGCTACTGAGTAACCTTGTTCAGTTGTATTATCAGTGTACGTCCACGTGGTA 17163 ||||| | ||| |||| | | ||||| || || || || || || || |||||||| ||| Sbjct 38604 CCTTGACGAGCCACTGTGAAGCCTTGCTCCGTGGTGTTGTCCGTATAAGTCCACGTAGTA 38663 Query 17164 CGTGTCCATAGGTATTGACCTTGTGGGGTGGTAGGTATGGTTGTAGACCAACCGCTTGTA 17223 |||||||||||| | ||||| ||| || || | |||||||||||| || Sbjct 38664 CGTGTCCATAGGAACTGACCAGCTGGTACAACCGGAATTGAAGTAGACCAACCGGAGGTG 38723 Query 17224 GGTCTAACTGTGCCACTAGTATTCACAGCATATTCAATCACTGTGGTTTTAATGCCTACT 17283 || |||| || ||||| | || |||||| ||||||| || | || |||||| Sbjct 38724 GGCTTAACCGTCCCACTGGCGTTTGTAGCATACTCAATCAAAGTATCCTCGATTCCTACT 38783 Query 17284 CCATCTTTCCCAGCTATACCGTCTTGTCCACGATCGCCATCCGCTCCCATTCTAGCTACT 17343 ||||| || ||||| ||||| || | || | || || || ||||| |||| || Sbjct 38784 CCATCCTTACCAGCAATACCATCATCACCTTTGGCACCGTCTGCCCCCATCTTAGCAACG 38843 Query 17344 GAGTAACCTGTTTCGCTTGAATTGTCTGTATAAGTCCATACTGTTTTAGTCCATAGGTA- 17402 |||||||| || ||||| ||| || |||||||| |||| |||||||| ||| | Sbjct 38844 GAGTAACCAACCTCTGTTGAAAGGTCAGTGTAAGTCCACTCTGTCTTAGTCCAGAGGAAG 38903 Query 17403 TTG--ACCAGCTGGAACAGTTGGTACTTGAGATTGCCACCCTGTAGCTGGTG 17452 ||| | |||| || || || ||||| | |||||| || | || |||| Sbjct 38904 TTGTTAGGAGCT---ACTGTAGGGACTTGTGTTTGCCAGCCAGATGCAGGTG 38952 >seq7607 Length=81728 Score = 118 bits (130), Expect = 3e-22 Identities = 191/275 (69%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 14182 ACATCGTTTACAGCGCCTTCGCCGTTAGCTTTATTCGCTCTACGCAAGATAACATCTACT 14241 |||||||| || | ||||| || || ||| ||| ||||| || ||||||| ||| | Sbjct 45204 ACATCGTTGACTACACCTTCACCTTTCGCTCGATTTGCTCTTCGTAAGATAATATCGATC 45263 Query 14242 TTTTTACCTTTGAACTGAGCTTTCTTAACAGTTACGTCAAAACCAAGCTCTTGTCCACCT 14301 || |||||||| ||| | | || | |||||| ||||| || ||| | | ||||||| Sbjct 45264 TTCTTACCTTTTAACCAGTCAGTATTGAAAGTTACATCAAACCCTAGCGCATCTCCACCT 45323 Query 14302 TGATAGCCGTATGCTTTCTTAACGTCTGGTCGTTTAATACCAGCGGATTGAACACGTGTC 14361 ||||| ||||| || ||||| || || || ||| |||||| || | | ||| Sbjct 45324 TGATAACCGTAAGCCTTCTTGACATCAGGCCGTGAAATACCCTTAGACTCGTATCTAGTC 45383 Query 14362 AACTCTTTACCAGTGCCATGTTGCATAAAGATGACATATGCATATTTTCCAATTGAACCT 14421 || || ||| |||||||| | ||| | | || |||| | ||| |||| ||| Sbjct 45384 AATTCATTAGTCGTGCCATGCTCCATGATCAAAACCCATGCTCTTGCTCCGATTGGTCCT 45443 Query 14422 TGTGGTTTGTCTGGAACTAGCCAACCAGCCACACG 14456 ||||| || || |||| ||||||||| ||||| Sbjct 45444 CGTGGTGCGTTAGGTACTAACCAACCAGCGACACG 45478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134869525051416