Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20ismenius_20[genbank_20GCA_5F001485965.1_202015-12-16]
160,084 sequences; 259,837,422 total letters
Query= NC_028871.1
Length=38392
Score E
Sequences producing significant alignments: (Bits) Value
seq2203 179 9e-41
seq14859 156 1e-33
seq1539 122 2e-23
seq3145 107 5e-19
>seq2203
Length=131112
Score = 179 bits (198), Expect = 9e-41
Identities = 245/336 (73%), Gaps = 6/336 (2%)
Strand=Plus/Plus
Query 937 TGCATTTAACCAAGAACAAGCCTTTCGCTTATTCATGGATGGCGATGGATTTGGATTGAT 996
||| | ||||||||||||||||| | | || |||||| | || ||||| ||| ||
Sbjct 1518 TGCTTATAACCAAGAACAAGCCTACAGAATGTTTATGGATTGTGAAGGATTCGGACTG-- 1575
Query 997 GCACATAT-TCGGTAATCT-TGCAGAAATGAAACACGACGAGCATGGGGATCATTTGCTT 1054
| |||||| | | | || ||| ||||| |||||| |||||||| ||||||||
Sbjct 1576 GAACATATCTTTGCCAGCTGTGCTGAAATTCGACACGATGAGCATGGAGATCATTTATGG 1635
Query 1055 ATACATTCT-CCAAACGGTCCAAAGAAAATCTATTATAAAGGTGGCGGGAAAGTAAATAG 1113
|| || ||| ||| | || |||| |||||||||||||| ||||| |||||||||
Sbjct 1636 AT-CAATCTACCAGAGGGAGAAAAGCGGATCTATTATAAAGGCGGCGGAAAAGTAAATGC 1694
Query 1114 CGTGGGTGCTATTACTGGTATGTCATTGGGTACTGTTACGTTTTTAGAAATCAATTTGCT 1173
|| ||||| || |||||||||||||| || ||||| || ||||| ||| ||||| ||||
Sbjct 1695 TGTCGGTGCCATCACTGGTATGTCATTTGGAACTGTCACTTTTTTGGAATTCAATCTGCT 1754
Query 1174 TCACAAAGATTTTATTGAAGAATGTTTTCGACGGACCTTTGCAGCGAAAAATAGATTTCA 1233
| |||||| |||| || || |||||| ||||| || | | | | | |||
Sbjct 1755 TAACAAAGCAGTTATAGATGAGGCTTTTCGTCGGACTAAAGCTTCTAGTTTTCGTTATCA 1814
Query 1234 TTTAGCTGAATTGAATCCACCTGCACCGAATCATCC 1269
| | |||||| |||||| || ||||| ||||||||
Sbjct 1815 TCTCGCTGAACAGAATCCGCCAGCACCAAATCATCC 1850
>seq14859
Length=68005
Score = 156 bits (172), Expect = 1e-33
Identities = 399/595 (67%), Gaps = 17/595 (3%)
Strand=Plus/Plus
Query 25958 TCTATAAGCAGCTGTGTTGCAAAATAGTTGGCTTCTTTTTCAACTTTCCACTCTGATACA 26017
|| ||| ||| || ||||| |||||||| || |||||||||| ||| | || |||||
Sbjct 12397 TCAATAGTCAGATGCGTTGCGAAATAGTTTGCCTCTTTTTCAATTTTTAATTCAGATACT 12456
Query 26018 ATAGTTTGTTTTGAAAGTTGGGGGGTATTTTCATCTTGATGTATAAGAGCGTGGCATAGT 26077
| |||| ||| || | || || ||||||| | |||||| || | ||| | || |
Sbjct 12457 AGCGTTTTTTTAGACAACATAGGTGTGTTTTCATTTGGATGTAAAACACAGTGACCTAAT 12516
Query 26078 TCGTGAGCGCAAGTAAACAATTGCCGC---TCATCTGAAAAGAGGTTATTTAAATGAATC 26134
|| ||| | ||||| | | ||| | | |||||| ||| || ||||| ||||||
Sbjct 12517 TCATGACCACAAGTTATCCATTTTCCCATTTCATCT-AAATTAGA--ATTTATGTGAATC 12573
Query 26135 ATTTTAATTCTGTTT-ATTTTATTATAATAACCGTAAACTTCACCTAAGTCTTCTTTTAA 26193
||||| ||| ||||| | |||| |||| ||||| |||| ||| || || ||||| | |||
Sbjct 12574 ATTTTTATT-TGTTTGAATTTACTATAGTAACCATAAATTTCTCCCAAATCTTCCTCTAA 12632
Query 26194 TATAAGAATATCTTTTTCTTTC--GCAATTAAAAACGGATTTCTTGTTTCATGAATATTA 26251
| || ||| || || || |||||| ||| ||||| | ||||| || | ||
Sbjct 12633 AACTAG--TATTTTCAACTCTCGTGCAATTCTAAAAGGATTGCGTGTTTGATATAGTTTT 12690
Query 26252 ACAAGCTTTTGTATCTGTTGCTGTATAAATTCACTCATCTCCAT--ACTATCCCACCTAA 26309
|| ||||| | || | ||| | | || || | | | ||| | | | |||
Sbjct 12691 ACCAGCTTAT-TA-ATTTTGTTAT-CAATTTGAGGTAAATACATAAAACAGCGCACTCCT 12747
Query 26310 TTTATTTTCGATATTTTTTAGGAGTAAATCGTTTCTTAGATTCTTCTTTTGCAATCCTTA 26369
|||| | |||||||||||||| ||| || |||||||| |||| || || |||| |
Sbjct 12748 TTTAATCACGATATTTTTTAGGTGTATATTTTTTCTTAGCTTCTATCTTAGCTATCCGCA 12807
Query 26370 ACGAATTTTCAAGAGACATAATTAATAGtttttttGTGTTTTCATCCATTTCTCCATCTT 26429
| | ||| || | ||| ||||| | || ||| ||| |||||| | |||||
Sbjct 12808 ATGCATTCTCTAAAGAAATAATGAGAGCTTCACGTGTAGCTTCGCTCATTTCACTATCTT 12867
Query 26430 CTTTCGAGTAAGCAAAGGCGTCTGAATTAGAAAGATCGTCAATCATTTTTTGAAGATCTT 26489
||||| |||| | ||| | |||||| | |||||| || | | || | ||||
Sbjct 12868 TCTTCGAAAAAGCCATTCCGTTAGCATTAGACAAATCGTCGATTAGTGCCTGCAACTCTT 12927
Query 26490 TTTGAATGCTTCGTTCGTCCTTGTCATTCAACTCCCAATAATGTTTTTTATCTGT 26544
||||||| || ||||| || ||| | || || | || | |||||| || ||
Sbjct 12928 TTTGAATATCACGCTCGTCTTTTTCAGTTAAATCGTAGTATTTTTTTTTCTCAGT 12982
>seq1539
Length=57711
Score = 122 bits (134), Expect = 2e-23
Identities = 203/291 (70%), Gaps = 2/291 (1%)
Strand=Plus/Minus
Query 35518 GTAGGACGATTAACGAAAGACCCTGAATTACGTTACACTCCAGCTGGAGTAGCTGTTGCG 35577
|||||||| ||||| ||||| || || |||||||| || || ||| ||| || ||
Sbjct 16152 GTAGGACGGTTAACCAAAGATCCCGATTTACGTTATACCGCAAGTGGCACAGCAGTGGCC 16093
Query 35578 ACTTTTACGCTAGCAGTAAATCGCCCATTTAAAAATGCACAAGGAGAACAAGAAGCCGAT 35637
|||||||| |||| || |||||| |||| ||| | | || | | |||||| |||
Sbjct 16092 ACTTTTACCTTAGCCGTTAATCGCAATTTTACGAATCAAAACGGCAATCGAGAAGCTGAT 16033
Query 35638 TTCATTAATTGTGTTGTTTGGCGTAAACCAGCGGAAAACGCAGCTAATTTCTTGAAAAAA 35697
|| || |||||||| ||||||||||||||||||||| |||| || |||||
Sbjct 16032 TTTATCAATTGTGTGATTTGGCGTAAACCAGCGGAAACGATGGCTACATTAGCTAAAAAG 15973
Query 35698 GGAAGCATGGCAGGCGTTGATGGACGTGTTCAAACTCGTAATTATGAGGA-CAGCGACGG 35756
|| || | ||||| | ||||| ||||||| || | |||||| | |||| | ||
Sbjct 15972 GGTAGTTTAATCGGCGTCGTCGGACGGATTCAAACGCGGACTTATGACAACCAGC-AAGG 15914
Query 35757 TAAACGCGTTTTCGTTACTGAGGTAGTTGCTGAAACAGTTCAATTCTTAGA 35807
| || || | ||| ||||| || || || || | | ||| | |||||
Sbjct 15913 ACAGCGTGTCTACGTGACTGAAGTTGTGGCCGATAATTTCCAACTATTAGA 15863
>seq3145
Length=45091
Score = 107 bits (118), Expect = 5e-19
Identities = 206/299 (69%), Gaps = 6/299 (2%)
Strand=Plus/Plus
Query 35518 GTAGGACGATTAACGAAAGACCCTGAATTACGTTACACTCCAGCTGGAGTAGCTGTTGCG 35577
|||||||| ||||||||||||||||| || || || || | |||| || ||| ||
Sbjct 1815 GTAGGACGTTTAACGAAAGACCCTGATTTGCGCTATACGAGCGGTGGAAAAGGTGTGGCT 1874
Query 35578 ACTTTTACGCTAGCAGTAAATCGCCCATTTAAAAATGCACAAGGAGAACAAGAAGCCGAT 35637
|| ||||| || ||||| ||||| |||| ||| | ||||| | ||||| ||
Sbjct 1875 ACATTTACCCTTGCAGTTAATCGAAACTTTACCAATCAAGCCGGAGAGCGTGAAGCAGAC 1934
Query 35638 TTCATTAATTGTGTTGTTTGGCGTAAACCAGCGGAAAACGCAGCTAAT--TTCTTGAAAA 35695
||| || | ||||| ||||| | ||||||||||||| |||||| | || | |
Sbjct 1935 TTCGTTCAATGTGTGATTTGGAGGAAACCAGCGGAAACACTGGCTAATTATGCTCG--CA 1992
Query 35696 AAGGAAGCATGGCAGGCGTTGATGGACGTGTTCAAACTCGTAATTATGAGGA-CAGCGAC 35754
|||| | || |||||| ||||| ||||||| ||| |||||| | |||| |
Sbjct 1993 GGGGAACCTTGCTAGGCGTGACCGGACGAATTCAAACACGTTCTTATGACAATCAGC-AA 2051
Query 35755 GGTAAACGCGTTTTCGTTACTGAGGTAGTTGCTGAAACAGTTCAATTCTTAGAGCCTAA 35813
|| |||| |||| || || || || || || || | ||||||| || || ||||
Sbjct 2052 GGGCAACGTGTTTATGTAACGGAAGTTGTAGCAGAGAATTTTCAATTGTTGGAATCTAA 2110
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 122499485254032
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |