Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ismenius_20[genbank_20GCA_5F001485965.1_202015-12-16] 160,084 sequences; 259,837,422 total letters Query= NC_028871.1 Length=38392 Score E Sequences producing significant alignments: (Bits) Value seq2203 179 9e-41 seq14859 156 1e-33 seq1539 122 2e-23 seq3145 107 5e-19 >seq2203 Length=131112 Score = 179 bits (198), Expect = 9e-41 Identities = 245/336 (73%), Gaps = 6/336 (2%) Strand=Plus/Plus Query 937 TGCATTTAACCAAGAACAAGCCTTTCGCTTATTCATGGATGGCGATGGATTTGGATTGAT 996 ||| | ||||||||||||||||| | | || |||||| | || ||||| ||| || Sbjct 1518 TGCTTATAACCAAGAACAAGCCTACAGAATGTTTATGGATTGTGAAGGATTCGGACTG-- 1575 Query 997 GCACATAT-TCGGTAATCT-TGCAGAAATGAAACACGACGAGCATGGGGATCATTTGCTT 1054 | |||||| | | | || ||| ||||| |||||| |||||||| |||||||| Sbjct 1576 GAACATATCTTTGCCAGCTGTGCTGAAATTCGACACGATGAGCATGGAGATCATTTATGG 1635 Query 1055 ATACATTCT-CCAAACGGTCCAAAGAAAATCTATTATAAAGGTGGCGGGAAAGTAAATAG 1113 || || ||| ||| | || |||| |||||||||||||| ||||| ||||||||| Sbjct 1636 AT-CAATCTACCAGAGGGAGAAAAGCGGATCTATTATAAAGGCGGCGGAAAAGTAAATGC 1694 Query 1114 CGTGGGTGCTATTACTGGTATGTCATTGGGTACTGTTACGTTTTTAGAAATCAATTTGCT 1173 || ||||| || |||||||||||||| || ||||| || ||||| ||| ||||| |||| Sbjct 1695 TGTCGGTGCCATCACTGGTATGTCATTTGGAACTGTCACTTTTTTGGAATTCAATCTGCT 1754 Query 1174 TCACAAAGATTTTATTGAAGAATGTTTTCGACGGACCTTTGCAGCGAAAAATAGATTTCA 1233 | |||||| |||| || || |||||| ||||| || | | | | | ||| Sbjct 1755 TAACAAAGCAGTTATAGATGAGGCTTTTCGTCGGACTAAAGCTTCTAGTTTTCGTTATCA 1814 Query 1234 TTTAGCTGAATTGAATCCACCTGCACCGAATCATCC 1269 | | |||||| |||||| || ||||| |||||||| Sbjct 1815 TCTCGCTGAACAGAATCCGCCAGCACCAAATCATCC 1850 >seq14859 Length=68005 Score = 156 bits (172), Expect = 1e-33 Identities = 399/595 (67%), Gaps = 17/595 (3%) Strand=Plus/Plus Query 25958 TCTATAAGCAGCTGTGTTGCAAAATAGTTGGCTTCTTTTTCAACTTTCCACTCTGATACA 26017 || ||| ||| || ||||| |||||||| || |||||||||| ||| | || ||||| Sbjct 12397 TCAATAGTCAGATGCGTTGCGAAATAGTTTGCCTCTTTTTCAATTTTTAATTCAGATACT 12456 Query 26018 ATAGTTTGTTTTGAAAGTTGGGGGGTATTTTCATCTTGATGTATAAGAGCGTGGCATAGT 26077 | |||| ||| || | || || ||||||| | |||||| || | ||| | || | Sbjct 12457 AGCGTTTTTTTAGACAACATAGGTGTGTTTTCATTTGGATGTAAAACACAGTGACCTAAT 12516 Query 26078 TCGTGAGCGCAAGTAAACAATTGCCGC---TCATCTGAAAAGAGGTTATTTAAATGAATC 26134 || ||| | ||||| | | ||| | | |||||| ||| || ||||| |||||| Sbjct 12517 TCATGACCACAAGTTATCCATTTTCCCATTTCATCT-AAATTAGA--ATTTATGTGAATC 12573 Query 26135 ATTTTAATTCTGTTT-ATTTTATTATAATAACCGTAAACTTCACCTAAGTCTTCTTTTAA 26193 ||||| ||| ||||| | |||| |||| ||||| |||| ||| || || ||||| | ||| Sbjct 12574 ATTTTTATT-TGTTTGAATTTACTATAGTAACCATAAATTTCTCCCAAATCTTCCTCTAA 12632 Query 26194 TATAAGAATATCTTTTTCTTTC--GCAATTAAAAACGGATTTCTTGTTTCATGAATATTA 26251 | || ||| || || || |||||| ||| ||||| | ||||| || | || Sbjct 12633 AACTAG--TATTTTCAACTCTCGTGCAATTCTAAAAGGATTGCGTGTTTGATATAGTTTT 12690 Query 26252 ACAAGCTTTTGTATCTGTTGCTGTATAAATTCACTCATCTCCAT--ACTATCCCACCTAA 26309 || ||||| | || | ||| | | || || | | | ||| | | | ||| Sbjct 12691 ACCAGCTTAT-TA-ATTTTGTTAT-CAATTTGAGGTAAATACATAAAACAGCGCACTCCT 12747 Query 26310 TTTATTTTCGATATTTTTTAGGAGTAAATCGTTTCTTAGATTCTTCTTTTGCAATCCTTA 26369 |||| | |||||||||||||| ||| || |||||||| |||| || || |||| | Sbjct 12748 TTTAATCACGATATTTTTTAGGTGTATATTTTTTCTTAGCTTCTATCTTAGCTATCCGCA 12807 Query 26370 ACGAATTTTCAAGAGACATAATTAATAGtttttttGTGTTTTCATCCATTTCTCCATCTT 26429 | | ||| || | ||| ||||| | || ||| ||| |||||| | ||||| Sbjct 12808 ATGCATTCTCTAAAGAAATAATGAGAGCTTCACGTGTAGCTTCGCTCATTTCACTATCTT 12867 Query 26430 CTTTCGAGTAAGCAAAGGCGTCTGAATTAGAAAGATCGTCAATCATTTTTTGAAGATCTT 26489 ||||| |||| | ||| | |||||| | |||||| || | | || | |||| Sbjct 12868 TCTTCGAAAAAGCCATTCCGTTAGCATTAGACAAATCGTCGATTAGTGCCTGCAACTCTT 12927 Query 26490 TTTGAATGCTTCGTTCGTCCTTGTCATTCAACTCCCAATAATGTTTTTTATCTGT 26544 ||||||| || ||||| || ||| | || || | || | |||||| || || Sbjct 12928 TTTGAATATCACGCTCGTCTTTTTCAGTTAAATCGTAGTATTTTTTTTTCTCAGT 12982 >seq1539 Length=57711 Score = 122 bits (134), Expect = 2e-23 Identities = 203/291 (70%), Gaps = 2/291 (1%) Strand=Plus/Minus Query 35518 GTAGGACGATTAACGAAAGACCCTGAATTACGTTACACTCCAGCTGGAGTAGCTGTTGCG 35577 |||||||| ||||| ||||| || || |||||||| || || ||| ||| || || Sbjct 16152 GTAGGACGGTTAACCAAAGATCCCGATTTACGTTATACCGCAAGTGGCACAGCAGTGGCC 16093 Query 35578 ACTTTTACGCTAGCAGTAAATCGCCCATTTAAAAATGCACAAGGAGAACAAGAAGCCGAT 35637 |||||||| |||| || |||||| |||| ||| | | || | | |||||| ||| Sbjct 16092 ACTTTTACCTTAGCCGTTAATCGCAATTTTACGAATCAAAACGGCAATCGAGAAGCTGAT 16033 Query 35638 TTCATTAATTGTGTTGTTTGGCGTAAACCAGCGGAAAACGCAGCTAATTTCTTGAAAAAA 35697 || || |||||||| ||||||||||||||||||||| |||| || ||||| Sbjct 16032 TTTATCAATTGTGTGATTTGGCGTAAACCAGCGGAAACGATGGCTACATTAGCTAAAAAG 15973 Query 35698 GGAAGCATGGCAGGCGTTGATGGACGTGTTCAAACTCGTAATTATGAGGA-CAGCGACGG 35756 || || | ||||| | ||||| ||||||| || | |||||| | |||| | || Sbjct 15972 GGTAGTTTAATCGGCGTCGTCGGACGGATTCAAACGCGGACTTATGACAACCAGC-AAGG 15914 Query 35757 TAAACGCGTTTTCGTTACTGAGGTAGTTGCTGAAACAGTTCAATTCTTAGA 35807 | || || | ||| ||||| || || || || | | ||| | ||||| Sbjct 15913 ACAGCGTGTCTACGTGACTGAAGTTGTGGCCGATAATTTCCAACTATTAGA 15863 >seq3145 Length=45091 Score = 107 bits (118), Expect = 5e-19 Identities = 206/299 (69%), Gaps = 6/299 (2%) Strand=Plus/Plus Query 35518 GTAGGACGATTAACGAAAGACCCTGAATTACGTTACACTCCAGCTGGAGTAGCTGTTGCG 35577 |||||||| ||||||||||||||||| || || || || | |||| || ||| || Sbjct 1815 GTAGGACGTTTAACGAAAGACCCTGATTTGCGCTATACGAGCGGTGGAAAAGGTGTGGCT 1874 Query 35578 ACTTTTACGCTAGCAGTAAATCGCCCATTTAAAAATGCACAAGGAGAACAAGAAGCCGAT 35637 || ||||| || ||||| ||||| |||| ||| | ||||| | ||||| || Sbjct 1875 ACATTTACCCTTGCAGTTAATCGAAACTTTACCAATCAAGCCGGAGAGCGTGAAGCAGAC 1934 Query 35638 TTCATTAATTGTGTTGTTTGGCGTAAACCAGCGGAAAACGCAGCTAAT--TTCTTGAAAA 35695 ||| || | ||||| ||||| | ||||||||||||| |||||| | || | | Sbjct 1935 TTCGTTCAATGTGTGATTTGGAGGAAACCAGCGGAAACACTGGCTAATTATGCTCG--CA 1992 Query 35696 AAGGAAGCATGGCAGGCGTTGATGGACGTGTTCAAACTCGTAATTATGAGGA-CAGCGAC 35754 |||| | || |||||| ||||| ||||||| ||| |||||| | |||| | Sbjct 1993 GGGGAACCTTGCTAGGCGTGACCGGACGAATTCAAACACGTTCTTATGACAATCAGC-AA 2051 Query 35755 GGTAAACGCGTTTTCGTTACTGAGGTAGTTGCTGAAACAGTTCAATTCTTAGAGCCTAA 35813 || |||| |||| || || || || || || || | ||||||| || || |||| Sbjct 2052 GGGCAACGTGTTTATGTAACGGAAGTTGTAGCAGAGAATTTTCAATTGTTGGAATCTAA 2110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122499485254032