Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ismenius_20[genbank_20GCA_5F001485965.1_202015-12-16] 160,084 sequences; 259,837,422 total letters Query= NC_028990.1 Length=38886 Score E Sequences producing significant alignments: (Bits) Value seq14859 138 3e-28 >seq14859 Length=68005 Score = 138 bits (152), Expect = 3e-28 Identities = 276/408 (68%), Gaps = 6/408 (1%) Strand=Plus/Plus Query 10274 TATTTAAAGCAATGAATGATGCTATCCTAGGTTTTGGTGG---GGATGCACAAATGGTTG 10330 ||||||||||| | ||| ||| || || || |||||||| || ||| | || Sbjct 38780 TATTTAAAGCATTAAATAATGGGATTCTTGGGTTTGGTGGTTCAACTGATCAAGTAAATG 38839 Query 10331 ACAGTGCGGTTGTTCAGTTATCACAATCATTCTCAAACGGTAAAGTAGATGCGCAAACGT 10390 | || ||| ||||| |||| ||| ||||||||||| |||||||| || ||||| | Sbjct 38840 A---AGCTGTTATTCAGCTATCTCAAAGTTTCTCAAACGGAAAAGTAGACGCACAAACTT 38896 Query 10391 GGAACTCAATGATTAATAGTGGTTTAGGACCTACCCTTAACGCATTAGCAAAAGAAATGG 10450 |||| |||||||||||| | | || ||||| || || | || ||| | |||| Sbjct 38897 GGAATTCAATGATTAATGCTCAACTTGGTCCTACTCTATCTGCTATCGCTAAAAAGATGG 38956 Query 10451 GTATAACGACAGGTGCATTAAAGGATGGGTTATCTTCAGGTAGCGTATCTGTAAAAGACT 10510 | || || | || | | || || ||||| ||| ||||| | ||||| |||| | Sbjct 38957 GAATTACAATGGGAGAGCTTAAAGAAGGGTTGTCTCAAGGTAAGATTTCTGTTGAAGAGT 39016 Query 10511 TCCAAGATGCCTTAGTTAAAATGGATAAAGAAGGTGGTGGCGGTCTTAAGTCATTAGAAA 10570 ||||| || ||| | ||||||||| ||||||| || || ||||| |||||| | Sbjct 39017 TCCAAAATCAATTAATAGAAATGGATACTAAAGGTGGCGGAGGACTTAAATCATTAAATC 39076 Query 10571 AGATAGCTAAAGATAGTACACAAGGTTTTGGTACTGCAATAGCTAACATGAAATCAGCTG 10630 | || ||||||||| || | || || || | || || ||| |||||| Sbjct 39077 AAATTGCTAAAGATTCAACCAAGGGGATTAAAACCTCTATTCAGAATGCAAAAACAGCTG 39136 Query 10631 TTACGCGTGGTACAGCTAAGATGATTGAAGGACTAAACAAATCACTAG 10678 |||| |||||| | | | | || |||||| |||| ||||| |||| Sbjct 39137 TTACTCGTGGTGTTGGTGAAGTAATAGAAGGATTAAATAAATCCCTAG 39184 Score = 86.0 bits (94), Expect = 2e-12 Identities = 210/317 (66%), Gaps = 11/317 (3%) Strand=Plus/Plus Query 18841 TTAACAATGAATTTAACCTACAACCGTGG----GAAGGTAGTCAGCAACTAGCATATCCT 18896 |||||||||||||||| || ||| |||||||| ||| |||| || | Sbjct 48488 TTAACAATGAATTTAATTTAG----GTGTAAATGAAGGTAGCTCTCAAGTAGCGAATAAT 48543 Query 18897 AATAAAATCATCTTACATGAAACAGCTAATCCACGCGCAACAGGTCGCAATGAAGCTACG 18956 || | || | || |||||||||||||| | |||||||| |||||||| || | Sbjct 48544 AAGTATATTTTATTGCATGAAACAGCTAACGAAACAGCAACAGGACGCAATGAGGCGCAG 48603 Query 18957 TATATGAAGAACAACTGGTTCAATGCTCACACTACAGCTATTGTTGGAGATGGTGGTATT 19016 |||||||| ||| | ||| | ||| | |||||| |||||||| || ||| Sbjct 48604 TATATGAAACGTTCGTGGACAAGTGCATATACTGCTTATATTGTGGGAGATGGCGGAATT 48663 Query 19017 GTTTATAAGGTAGCACCAGAGGGTAACGTATCATGGGGTGCTGGT---AATGCTAACCCT 19073 ||||| | || | || ||| | ||| | || |||||| ||||||| | Sbjct 48664 GTTTACCAAGTCGGACAGCCTGGTTATGTACAGTATGGAGCTGGTTCATATGCTAATGCA 48723 Query 19074 TATGCTCCTGTTCAAATTGAGTTACAACATACAAATGACCCAGCACTTTTCAAAGCCAAC 19133 || |||||| ||||| || ||||| |||||| |||| |||| | || | ||| Sbjct 48724 AATAGTCCTGTGCAAATCGAATTACAGCATACACATGATAAAGCAATGTTTGAGAAAAAC 48783 Query 19134 TACAAAGCGTATATTGA 19150 |||||||| || |||| Sbjct 48784 TACAAAGCATACGTTGA 48800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124077280157184