Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ismenius_20[genbank_20GCA_5F001485965.1_202015-12-16] 160,084 sequences; 259,837,422 total letters Query= NC_029030.1 Length=31075 Score E Sequences producing significant alignments: (Bits) Value seq1539 154 3e-33 seq1464 152 1e-32 seq3145 131 3e-26 >seq1539 Length=57711 Score = 154 bits (170), Expect = 3e-33 Identities = 183/247 (74%), Gaps = 1/247 (0%) Strand=Plus/Minus Query 28704 TTTACGCTTGCGGTTAACCGTAATTTTAAAAATCAAAATGGTGAACGTGAAGCTGATTTC 28763 ||||| | || ||||| || ||||||| |||||||| || | || ||||||||||| Sbjct 16089 TTTACCTTAGCCGTTAATCGCAATTTTACGAATCAAAACGGCAATCGAGAAGCTGATTTT 16030 Query 28764 ATTAATATCGTGATTTGGCGTCAGCAAGCTGAAAATTTAGCTAACTGGGCTAAAAAAGGG 28823 || ||| |||||||||||| | | ||| |||| | |||| | |||||||| || Sbjct 16029 ATCAATTGTGTGATTTGGCGTAAACCAGCGGAAACGATGGCTACATTAGCTAAAAAGGGT 15970 Query 28824 ACTCTTTTAGGCATTACTGGTCGAATTCAGACCCGCAATTATGAAAACCAGCAAGGACAG 28883 | | | | ||| | || || ||||| || || | |||||| ||||||||||||||| Sbjct 15969 AGTTTAATCGGCGTCGTCGGACGGATTCAAACGCGGACTTATGACAACCAGCAAGGACAG 15910 Query 28884 CGTGTTTATGTTACAGAAGTTGTTGCGGATAATTTCCAATTTTTGGAAAAGAGAGAAGC- 28942 ||||| || || || |||||||| || |||||||||||| | || |||| | || ||| Sbjct 15909 CGTGTCTACGTGACTGAAGTTGTGGCCGATAATTTCCAACTATTAGAAAGTAAAGCAGCG 15850 Query 28943 ACAGCAA 28949 |||| || Sbjct 15849 ACAGAAA 15843 >seq1464 Length=66918 Score = 152 bits (168), Expect = 1e-32 Identities = 225/318 (71%), Gaps = 12/318 (4%) Strand=Plus/Plus Query 28621 TGATTAATAATGTAGTACTGGTTGGCCGCACGACTAAAGAAATCGAATTGAAATATACAA 28680 |||||||||| || ||||| ||||| || ||| ||||| || || ||||||| Sbjct 17855 TGATTAATAACGTTGTACTAGTTGGACGTCTGACAAAAGATCCAGATTTACGATATACAT 17914 Query 28681 ------GCAACAATTTAGCATACGCAAACTTTACGCTTGCGGTTAACCGTAATTTTAAAA 28734 ||| | ||||| ||| |||||| || || || ||||| || | | Sbjct 17915 CAAGTGGCACTGCTGTAGCA-ACGTTCACTTTA-----GCTGTCAATCGTAACTTCACGA 17968 Query 28735 ATCAAAATGGTGAACGTGAAGCTGATTTCATTAATATCGTGATTTGGCGTCAGCAAGCTG 28794 ||||| || | ||||| || ||||| |||||| ||||||||||| | ||| | Sbjct 17969 GCCAAAACGGCAACCGTGAGGCGGATTTTATTAATTGTGTGATTTGGCGAAAATCAGCAG 18028 Query 28795 AAAATTTAGCTAACTGGGCTAAAAAAGGGACTCTTTTAGGCATTACTGGTCGAATTCAGA 28854 ||| |||| |||| || | ||||| ||||||||||| | |||||||| ||||| | Sbjct 18029 AAACACTAGCAAACTATGCACATAAAGGAACTCTTTTAGGTGTAACTGGTCGTATTCAAA 18088 Query 28855 CCCGCAATTATGAAAACCAGCAAGGACAGCGTGTTTATGTTACAGAAGTTGTTGCGGATA 28914 | || |||||| || || |||||||| ||||| || || |||||||| ||||| || | Sbjct 18089 CGCGTTCTTATGATAATCAACAAGGACAACGTGTGTACGTAACAGAAGTAGTTGCTGAAA 18148 Query 28915 ATTTCCAATTTTTGGAAA 28932 | |||||||| ||||||| Sbjct 18149 ACTTCCAATTATTGGAAA 18166 >seq3145 Length=45091 Score = 131 bits (144), Expect = 3e-26 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 28704 TTTACGCTTGCGGTTAACCGTAATTTTAAAAATCAAAATGGTGAACGTGAAGCTGATTTC 28763 ||||| ||||| ||||| || || |||| |||||| || || |||||||| || ||| Sbjct 1878 TTTACCCTTGCAGTTAATCGAAACTTTACCAATCAAGCCGGAGAGCGTGAAGCAGACTTC 1937 Query 28764 ATT-AATATCGTGATTTGGCGTCAGCAAGCTGAAAATTTAGCTAACTGGGCTAAAAAAGG 28822 || ||| | ||||||||| | | | ||| |||| | ||||| | ||| | || Sbjct 1938 GTTCAATGT-GTGATTTGGAGGAAACCAGCGGAAACACTGGCTAATTATGCTCGCAGGGG 1996 Query 28823 GACTCTTTTAGGCATTACTGGTCGAATTCAGACCCGCAATTATGAAAACCAGCAAGGACA 28882 || | ||||| | || || |||||||| || || |||||| || |||||||| || Sbjct 1997 AACCTTGCTAGGCGTGACCGGACGAATTCAAACACGTTCTTATGACAATCAGCAAGGGCA 2056 Query 28883 GCGTGTTTATGTTACAGAAGTTGTTGCGGATAATTTCCAATTTTTGGAA 28931 ||||||||||| || |||||||| || || ||||| ||||| |||||| Sbjct 2057 ACGTGTTTATGTAACGGAAGTTGTAGCAGAGAATTTTCAATTGTTGGAA 2105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 99129595969896