Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20ismenius_20[genbank_20GCA_5F001485965.1_202015-12-16]
160,084 sequences; 259,837,422 total letters
Query= NC_029030.1
Length=31075
Score E
Sequences producing significant alignments: (Bits) Value
seq1539 154 3e-33
seq1464 152 1e-32
seq3145 131 3e-26
>seq1539
Length=57711
Score = 154 bits (170), Expect = 3e-33
Identities = 183/247 (74%), Gaps = 1/247 (0%)
Strand=Plus/Minus
Query 28704 TTTACGCTTGCGGTTAACCGTAATTTTAAAAATCAAAATGGTGAACGTGAAGCTGATTTC 28763
||||| | || ||||| || ||||||| |||||||| || | || |||||||||||
Sbjct 16089 TTTACCTTAGCCGTTAATCGCAATTTTACGAATCAAAACGGCAATCGAGAAGCTGATTTT 16030
Query 28764 ATTAATATCGTGATTTGGCGTCAGCAAGCTGAAAATTTAGCTAACTGGGCTAAAAAAGGG 28823
|| ||| |||||||||||| | | ||| |||| | |||| | |||||||| ||
Sbjct 16029 ATCAATTGTGTGATTTGGCGTAAACCAGCGGAAACGATGGCTACATTAGCTAAAAAGGGT 15970
Query 28824 ACTCTTTTAGGCATTACTGGTCGAATTCAGACCCGCAATTATGAAAACCAGCAAGGACAG 28883
| | | | ||| | || || ||||| || || | |||||| |||||||||||||||
Sbjct 15969 AGTTTAATCGGCGTCGTCGGACGGATTCAAACGCGGACTTATGACAACCAGCAAGGACAG 15910
Query 28884 CGTGTTTATGTTACAGAAGTTGTTGCGGATAATTTCCAATTTTTGGAAAAGAGAGAAGC- 28942
||||| || || || |||||||| || |||||||||||| | || |||| | || |||
Sbjct 15909 CGTGTCTACGTGACTGAAGTTGTGGCCGATAATTTCCAACTATTAGAAAGTAAAGCAGCG 15850
Query 28943 ACAGCAA 28949
|||| ||
Sbjct 15849 ACAGAAA 15843
>seq1464
Length=66918
Score = 152 bits (168), Expect = 1e-32
Identities = 225/318 (71%), Gaps = 12/318 (4%)
Strand=Plus/Plus
Query 28621 TGATTAATAATGTAGTACTGGTTGGCCGCACGACTAAAGAAATCGAATTGAAATATACAA 28680
|||||||||| || ||||| ||||| || ||| ||||| || || |||||||
Sbjct 17855 TGATTAATAACGTTGTACTAGTTGGACGTCTGACAAAAGATCCAGATTTACGATATACAT 17914
Query 28681 ------GCAACAATTTAGCATACGCAAACTTTACGCTTGCGGTTAACCGTAATTTTAAAA 28734
||| | ||||| ||| |||||| || || || ||||| || | |
Sbjct 17915 CAAGTGGCACTGCTGTAGCA-ACGTTCACTTTA-----GCTGTCAATCGTAACTTCACGA 17968
Query 28735 ATCAAAATGGTGAACGTGAAGCTGATTTCATTAATATCGTGATTTGGCGTCAGCAAGCTG 28794
||||| || | ||||| || ||||| |||||| ||||||||||| | ||| |
Sbjct 17969 GCCAAAACGGCAACCGTGAGGCGGATTTTATTAATTGTGTGATTTGGCGAAAATCAGCAG 18028
Query 28795 AAAATTTAGCTAACTGGGCTAAAAAAGGGACTCTTTTAGGCATTACTGGTCGAATTCAGA 28854
||| |||| |||| || | ||||| ||||||||||| | |||||||| ||||| |
Sbjct 18029 AAACACTAGCAAACTATGCACATAAAGGAACTCTTTTAGGTGTAACTGGTCGTATTCAAA 18088
Query 28855 CCCGCAATTATGAAAACCAGCAAGGACAGCGTGTTTATGTTACAGAAGTTGTTGCGGATA 28914
| || |||||| || || |||||||| ||||| || || |||||||| ||||| || |
Sbjct 18089 CGCGTTCTTATGATAATCAACAAGGACAACGTGTGTACGTAACAGAAGTAGTTGCTGAAA 18148
Query 28915 ATTTCCAATTTTTGGAAA 28932
| |||||||| |||||||
Sbjct 18149 ACTTCCAATTATTGGAAA 18166
>seq3145
Length=45091
Score = 131 bits (144), Expect = 3e-26
Identities = 168/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 28704 TTTACGCTTGCGGTTAACCGTAATTTTAAAAATCAAAATGGTGAACGTGAAGCTGATTTC 28763
||||| ||||| ||||| || || |||| |||||| || || |||||||| || |||
Sbjct 1878 TTTACCCTTGCAGTTAATCGAAACTTTACCAATCAAGCCGGAGAGCGTGAAGCAGACTTC 1937
Query 28764 ATT-AATATCGTGATTTGGCGTCAGCAAGCTGAAAATTTAGCTAACTGGGCTAAAAAAGG 28822
|| ||| | ||||||||| | | | ||| |||| | ||||| | ||| | ||
Sbjct 1938 GTTCAATGT-GTGATTTGGAGGAAACCAGCGGAAACACTGGCTAATTATGCTCGCAGGGG 1996
Query 28823 GACTCTTTTAGGCATTACTGGTCGAATTCAGACCCGCAATTATGAAAACCAGCAAGGACA 28882
|| | ||||| | || || |||||||| || || |||||| || |||||||| ||
Sbjct 1997 AACCTTGCTAGGCGTGACCGGACGAATTCAAACACGTTCTTATGACAATCAGCAAGGGCA 2056
Query 28883 GCGTGTTTATGTTACAGAAGTTGTTGCGGATAATTTCCAATTTTTGGAA 28931
||||||||||| || |||||||| || || ||||| ||||| ||||||
Sbjct 2057 ACGTGTTTATGTAACGGAAGTTGTAGCAGAGAATTTTCAATTGTTGGAA 2105
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 99129595969896
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |