Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ismenius_20[genbank_20GCA_5F001485965.1_202015-12-16] 160,084 sequences; 259,837,422 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq20 163 2e-35 seq32113 102 6e-17 seq1641 86.0 4e-12 seq48995 84.2 2e-11 >seq20 Length=148542 Score = 163 bits (180), Expect = 2e-35 Identities = 592/924 (64%), Gaps = 23/924 (2%) Strand=Plus/Plus Query 91527 CGTTGCCTTTGGCGCCACACTTTATCATGTCGTCAAAGCAGCCGGTCAATTTGAACACTT 91586 |||||||||||||||| |||| ||||||||| ||| || | || || || | || Sbjct 86232 CGTTGCCTTTGGCGCCGCACTCGATCATGTCGGTGAAGTGTCCCGCCAGTTGAAATATTT 86291 Query 91587 CATCGTTGTTACAAATCATTTCCTCTTCGTTGATTATTTT-GCAAAACTCTTTAAACAAA 91645 | || | ||| | ||||||||| ||| ||| || || | |||| ||| ||||| Sbjct 86292 CTGTGTCGCCACACACCATTTCCTCGTCGGCGATCATGTTCGTCAAACG-TTTGAACAAC 86350 Query 91646 AGCGTAGCCATGTTACTGCTAAACACGAGTGTGACATCTGTAAAAAATTTGTCTAAACAT 91705 | || ||| ||| |||||||| | ||| || || || | || |||| Sbjct 86351 AAATAGGCGGCGTTGGAGCTGAACACGAGGGCGACGTCGCGCAACAACGTTTCCAAACGC 86410 Query 91706 TCGGAAAAGTATTTTTGCAAACGCCTTTGTCTTTGCCACAATGTGTACACTTTGGGGTAT 91765 | | ||| | |||| || || | ||||||| ||| ||| ||| || Sbjct 86411 TGCGCAAACT------GCAAGTGCGCGTGCATGCGCCACAACATGTTCACGACGGGCAAT 86464 Query 91766 TGTGACAAAAACGA-TTCGAT-GCGATCCCTATTTTTGAATAAATACAACACTTGTTGAG 91823 |||| |||| || ||||| ||| || | |||||||| | ||| | | |||||| | Sbjct 86465 TGTG-CAAACGCGCGTTCGAGCGCG-TCAATGTTTTTGAACAGATAGTAAATTTGTTGGG 86522 Query 91824 ACACAAAAGATAATTTATTTTTGTCGAAACACAAAAACGAATATTTGGGATCGCAATACA 91883 |||| || | | ||| |||||||| || | || | | || |||| |||| Sbjct 86523 ACACGAAGCTGAGTCGATTCTTGTCGAAGCATATGAAATTAAACCGCGGGTCGCCGTACA 86582 Query 91884 ACAAAGACTCCAATTCTATCAACGAATTCGGGTACGGCAAAAAAGTGAACACCTCTTTGT 91943 | ||| |||||| || || | || || | ||||| ||| |||| | | ||||| Sbjct 86583 ATAAACACTCCAGGTCGATGAGACTGTTGGGTTGCGGCAGAAAGGTGATGATTTTTTTGT 86642 Query 91944 CTCCATCGCAATCGCGATTGGCGCCAACGAAAGTA--CCCAGACCGATTTTAACGTTCCA 92001 | |||||||||||| |||||||| || || || |||| || | ||| |||||||| Sbjct 86643 CGCCATCGCAATCGGTGTTGGCGCC--CGGAAATATGCCCAAGCCCACTTTGACGTTCCA 86700 Query 92002 ATTGG-GTT----TCGGCGAAGGAATCACGGTGGAAAACTGGGTGGACAATTGTGATATG 92056 || || ||| ||| || | |||| || | ||| ||| || || ||| Sbjct 86701 ATCGGTGTTGGAGTCGTTGA--GGCGCACGTCCGACACCTGCGTGCTCAGCTGGCTGATG 86758 Query 92057 TTCGGATGGCGCGTGTTCCAAACGCGTGCGTTCTCCACAGGTCTGCCGTAGTATCGTTGC 92116 || || || |||||| |||| |||| |||| |||| | | ||||||||| || | Sbjct 86759 TTGGGGTGTCGCGTGGTCCAGGCGCGCACGTTGCCCACCCGCCGGCCGTAGTAGCGGTTG 86818 Query 92117 GCACTCATCGGTGGCGTGATGATCTCGTTTATTCCATTGATACATTGAACGTTTGCGTAA 92176 | || | |||| | ||| ||||| | || || | ||| || ||||| || || Sbjct 86819 ACGCTGGCGCGCGGCGGAACGATTTCGTTGACGCCGTTCAAACACTGCACGTTGGCATAG 86878 Query 92177 AAACTTGACGTGTTCAAAAATGTCGAGTACACATATTGGCCGGCGTAACCGTTTTTGTTT 92236 || | ||||| | ||| ||||| |||| |||||| ||||||||||||||||| | Sbjct 86879 AAGGAGGCGGTGTTGAGAAACGTCGAATACAAATATTGAACGGCGTAACCGTTTTTGCTC 86938 Query 92237 TGTATCAAATCCTTTATGACACCTTGGGCGAATGAAATTTTTTGCATGACACCCCACACG 92296 || | || || |||| || || | || | ||||||||||| | | | | | | | Sbjct 86939 TGCAATTGGTCTTTGATGATGCCGTGTGTGAGTTTAATTTTTTGCAGGGCGCTCGAAATG 86998 Query 92297 TTCACCAACCCGCCGACTTTTTTACTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTG 92356 | |||||| | | | | | ||| || || Sbjct 86999 TCCACCAAGCTGTTGTCGTGTTTGGAGTTGAACGCTTTGTTGAGAAAAATGACAAAATTG 87058 Query 92357 TGATCCCACAGTGTGAAGTTGGGCAATATCAAATAGTCTATGTTGTCTGTGAATTTGTTA 92416 || ||||||| | | |||| ||||| ||||||||||| ||| |||| ||||| ||||| Sbjct 87059 TGGTCCCACAATATAAAGTGTGGCAAGATCAAATAGTCAATGGTGTCGGTGAACTTGTTG 87118 Query 92417 GTTTTTAATTTGTGTAAAAACACA 92440 ||||| | ||| | || |||||| Sbjct 87119 GTTTTGAGTTTCTTCAAGAACACA 87142 Score = 125 bits (138), Expect = 5e-24 Identities = 141/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 102691 CCATTGCGAATACATTGCAATCCCTCAGACAAACGATTGCCTACAAAAGATTGGTTTATG 102750 || ||||| || |||||||| | || | || |||||||| ||||| || || || || Sbjct 99217 CCGTTGCGCATCCATTGCAAACTTTCCGCCATGCGATTGCCCACAAACGACTGATTCTTG 99158 Query 102751 CTCCACTGATCCAGTCGTGTGCCCTCTAATTTCTCATAACCTGTCACATTTTTACCGATA 102810 ||||||| || | || |||||||| | ||| || | || || || | ||| Sbjct 99157 GTCCACTGGTCGAAACGCGTGCCCTCCACTTTTTCGTGGCCCGTGTGGTTGCTCTTGATG 99098 Query 102811 AACTCTTTGTATATGTTGTCGGGTGTGTTATTAAAAAACATGTAAGGTATATGAAACATA 102870 ||||||||| ||||||||||||| ||||| ||||| |||||||| ||||| | ||| || Sbjct 99097 AACTCTTTGAATATGTTGTCGGGAGTGTTGTTAAACAACATGTACGGTATGTTAAATATG 99038 Query 102871 GGATAGCGC 102879 ||||||||| Sbjct 99037 GGATAGCGC 99029 Score = 114 bits (126), Expect = 9e-21 Identities = 385/590 (65%), Gaps = 16/590 (3%) Strand=Plus/Plus Query 169 TATATGGTAACCGAAGATCCGTTCAGGGGACCCGGCAAGAACGTTCGCATCACTCTGTTC 228 ||||| || ||||||| || |||| || |||||||| ||| | ||| ||||| Sbjct 136662 TATATCGTGGCCGAAGACCCCTTCACCGGGCCCGGCAAAAACCAAAAGCTAACTTTGTTC 136721 Query 229 AAGGAAATCAGACGGGTCCAGCCCGACACCATGAAGCTGGTGTGCAACTGGAGCGGAAAA 288 || || || | || |||| ||||| |||||||||||| |||||||||||| ||| Sbjct 136722 AAAGAGATTCGCAATGTGAAGCCGGACACGATGAAGCTGGTGCTCAACTGGAGCGGCAAA 136781 Query 289 GAATTCCTGCGCACGTCTTGGAGTCGATTCATCTCCGAGGA---ATTCCCCATCACCACC 345 || || |||| |||||| || ||| | |||||| || ||||| || | Sbjct 136782 GAGTTTTTGCGTGAAACTTGGACCCGTTTCGT---CGAGGACAGTTTTCCCATTGTCAAC 136838 Query 346 GACCAGGAAATCATGGACTTGTGGTTTGAACTTCAGCTGAGAAAAATGGAGCCCGACCGT 405 |||||||| | |||||| ||| | | | | |||||| | |||| ||||| Sbjct 136839 GACCAGGAGGTGATGGACGTGTTTCTCGTGATCAACCTGAGACCCACTCGGCCCAACCGT 136898 Query 406 TGTTACAAGTTCACAATGCAATACGCTCTGTGTGCCAGCCCCGATTACGTGCCACACAAC 465 ||||||||||| ||| |||| || || | |||| |||||||| ||| | Sbjct 136899 TGTTACAAGTTTTTGGCTCAACACGCGCTCCGTTGGGACGCCGAGTACGTGCCGCACGAA 136958 Query 466 GTGATCCGTCAAC-AAGATCCGTTCTACGTCGGACCCGACAA-CATTGCACACATCAACC 523 ||||| || || | || || | ||||| || | |||| | | || | |||| Sbjct 136959 GTGATTCG-CATCGTCGAACCCATGTACGTGGGCCAGAACAATGAGTACAGA-ATCAGTT 137016 Query 524 TAACAAAGAAAGGTTTC--CCGTT-CCCATTGACGTGTTTGCAGAACGTTTACAACGAAT 580 | | |||| | | | ||| ||| | | | | || | || |||| | | | Sbjct 137017 TGGC---GAAACGCGGCGGCGGTTGCCCCATCATGAACATACACAGCGAGTACACCAACT 137073 Query 581 GCTTCGAGAGCTTCTTCGACGAAGTACTCTGGCCCTACTTCTACCGTCCTCTCGTGTACG 640 || || ||| || || || ||||| |||| ||| || |||||||| Sbjct 137074 CGTTTGAATCGTTCGTCAACCGCGTCATCTGGGAGAACTTTTACAAGCCCATCGTGTACA 137133 Query 641 TTGGTACCACATCGGGAGAGGTTGAGGAAATTATGATCGAAGTGTCGCTGCTGTTCAAGA 700 |||| ||| || | || | ||||||||| | |||||||||||||| ||||||| Sbjct 137134 TTGGCACCGACTCTGCCGAAGAGGAGGAAATTCTCATCGAAGTGTCGCTCGTGTTCAAAG 137193 Query 701 TTAAAGAATTCGCGCCCGACGTACCCCTCTTCACCGGACCAGCATACTAA 750 ||||||| || || || |||| || || |||||||| || ||||| ||| Sbjct 137194 TTAAAGAGTTTGCACCTGACGCGCCTCTGTTCACCGGTCCCGCATATTAA 137243 Score = 95.1 bits (104), Expect = 9e-15 Identities = 163/234 (70%), Gaps = 12/234 (5%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||| ||||| | || || ||| || ||||| || | ||| | Sbjct 106165 AATGCAAATATTTGTCAAAACATTAACGGGCAAAACGATCACAATCGAAACC---AGCTC 106109 Query 27849 CGACGA-----TGTA-CAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGAT 27902 || || ||| ||| |||||||||||||| ||||||||||||||||| || | Sbjct 106108 CGCGGAAACTTTGTCTCAA---GTCAAACAAAAAATTGCCGACAAAGAAGGTGTGCCCGT 106052 Query 27903 GGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGA 27962 || || || || | || | ||| || ||||| | || ||||| | | |||| Sbjct 106051 CGATCAACAGCGACTCATCTATGCGGGCAAACAGCTCGAAGACGACAAAACGATCGCCGA 105992 Query 27963 TTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| |||||||| ||| |||| |||| ||||| ||||| ||||| Sbjct 105991 CTACAACATACAAAAAGAAGCCACCGTGCACATGGTGTTGCGATTGCGAGGCGG 105938 Score = 93.3 bits (102), Expect = 3e-14 Identities = 163/236 (69%), Gaps = 16/236 (7%) Strand=Plus/Minus Query 104754 GTAATCCTTTGCATACACATCACGAACATACAAAACGTTATCGATTTTGTCGTACACCAA 104813 |||||| | || ||||| || || || |||| || | || ||||||||||||| Sbjct 96911 GTAATCGCTGGCGTACACGTCGCGCGCAAACAACACATCGTCCTGCTTGTCGTACACCAG 96852 Query 104814 TTGTATTGCGCGATTGACAAATTTGTCTTCATCATAATTTCCATACAAAAACATACGTTT 104873 ||| || || ||||||| || || | || || || |||||||||||||| || Sbjct 96851 TTGGATGGCACGATTGATGTGCTTCTCCTGGTCGACGTTGCCGTACAAAAACATACGCTT 96792 Query 104874 -CAtttttttGTTGCGTGCATATTGTTTGTCGAAAAAATTGTGTATCAACACGTTATTGT 104932 || | ||||| | ||| |||||||| |||||||||| ||| | ||| |||| Sbjct 96791 GCAATGTTTTG-------CGTATAGTTTGTCGTAAAAATTGTGCGCCAAAATGTTGTTGT 96739 Query 104933 TCATCATGATGTTGGGAAA----AGAAAAGTGTCGGCCGTCAATCACAAACGTGCC 104984 |||| | ||||||||||| ||||| || ||||| | || |||||||| Sbjct 96738 TCATGAGAATGTTGGGAAAGCTGAGAAA----CCGACCGTCCAACATGAACGTGCC 96687 Score = 93.3 bits (102), Expect = 3e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 45806 ATTTGGGAGCGCAGTTACGAAGACAACTACACACTCGGTCAACAATTAAGCATACGATTG 45865 || |||||||| | ||||| ||||| ||||| ||||| ||||| || ||||| || | Sbjct 101856 ATGTGGGAGCGAGGCTACGAGGACAATTACACGCTCGGCCAACAGTTGAGCATTCGCATC 101915 Query 45866 ACCACGAATCTCATACAGAGTGGTTTAGATTTTAAACATCA 45906 ||||| || || |||||||| || || |||||||||||||| Sbjct 101916 ACCACCAAACTGATACAGAGCGGGTTGGATTTTAAACATCA 101956 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/168 (72%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 46187 CACAAATTTATTAATGTCGTGTTTGTGACCGACACAGAAAACTATTTGTACACACAACAC 46246 || ||| || | || || |||| || |||||| || |||| || | |||||||| Sbjct 102369 CATAAAATTGTGAACGTGCTGTTCGTCACCGACGTCGACCACTACATGAA-ACACAACAA 102427 Query 46247 AAACTG-TTTTACGTGTACAATTCTATGAAATTCTATTATTATTGTTTAAAAAATAAATT 46305 | ||||| |||||||||| | |||||||| ||||||||||| ||||||||||| Sbjct 102428 TTTTTCATTTTATTTGTACAATTCGCTCAAATTCTACTATTATTGTTTGAAAAATAAATT 102487 Query 46306 TGTTTTTGTGTACGAAGACTACGAAACTTTATATTTTGTGTACACGAT 46353 ||| |||| | ||| |||||| || | ||| |||||||||| Sbjct 102488 TGTGTTTGAAAGTGGCGACAACGAAATGTTGTTTTTGTTGTACACGAT 102535 >seq32113 Length=13445 Score = 102 bits (112), Expect = 6e-17 Identities = 163/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 |||||||| || ||||||||||| ||||| || ||| ||||| | || || ||| Sbjct 7793 AAAATGCAGATCTTTGTGAAAACACTTACGGGTAAAACCATTACTTTGGAAGTTGAACCT 7734 Query 27847 ACCG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||| || || | ||| || ||| ||||| ||||| ||||| |||| | Sbjct 7733 TCCGATACTATTGAAAAT--GTAAAAGCCAAAATTCAAGACAAGGAAGGCATTCCTCCAG 7676 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||||| || ||||| || ||||| |||||||| |||| ||||| | || || | Sbjct 7675 ATCAACAACGTTTGATTTTCGCTGGAAAGCAATTGGAAGACGGACGCACTCTTTCTGACT 7616 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | || || |||||||| ||| | || ||||| |||||| | ||||| || Sbjct 7615 ATAATATTCAAAAAGAATCTACTCTTCACTTGGTATTGCGTCTTCGTGGTGG 7564 >seq1641 Length=3631 Score = 86.0 bits (94), Expect = 4e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||| || || || ||||| || ||| ||||| | || ||||| | | Sbjct 2157 AATGCAAATTTTCGTCAAGACCCTTACGGGTAAAACCATTACCCTCGAGGTCGAGGCCTC 2216 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 || | || || || ||| ||||| || || |||||| |||| || || Sbjct 2217 TGATACTATAGAAAATGTAAAAGCTAAAATCCAAGATAAGGAAGGTATTCCACCAGACCA 2276 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968 |||||| || || ||||| || |||||| | || || | ||| | ||||| || ||||| Sbjct 2277 GCAACGTTTGATCTTTGCTGGTAAACAACTAGAAGATGGACGTACATTGTCTGACTACAA 2336 Query 27969 CATCCAAAAAGAGAGCACTTTGCAT 27993 ||| ||||| || ||| |||||| Sbjct 2337 CATTCAAAAGGAATCCACATTGCAT 2361 >seq48995 Length=1108 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| |||||||||||||| ||| |||||| |||| || || | Sbjct 220 ATGCAAATTTTTGTAAAAACTCTTACTGGTAAAACTATTACTCTTGAAGTTGAGCCTTCT 279 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || | ||| || ||| |||||| || || || || |||| || | Sbjct 280 GACACAATTGAAAAT--GTTAAAGCAAAAATTCAAGATAAGGAGGGGATTCCCCCAGACC 337 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || || | ||||| || ||||||||| | || || | |||| ||||| || |||| Sbjct 338 AACAGAGGCTCATTTTCGCTGGAAAACAACTTGAAGATGGGCGCACATTGTCAGACTACA 397 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| || || || ||||| ||||| || | ||| || | || || Sbjct 398 ACATTCAGAAGGAATCTACTTTACATTTAGTACTTCGTCTGAGAGGTGG 446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355168104005868