Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ismenius_20[genbank_20GCA_5F001485965.1_202015-12-16] 160,084 sequences; 259,837,422 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq20 127 2e-24 seq21476 93.3 4e-14 >seq20 Length=148542 Score = 127 bits (140), Expect = 2e-24 Identities = 302/457 (66%), Gaps = 17/457 (4%) Strand=Plus/Minus Query 101928 CAAAAACGGATACGCTGGCCAGCATTTATACTCGACATTTTTAAACACTGCCAGTTTTTA 101987 ||||||||| ||||| | || |||| || ||||| ||| | ||||| ||| || || Sbjct 86935 CAAAAACGGTTACGCCGTTCAATATTTGTATTCGACGTTTCTCAACACCGCCTCCTTCTA 86876 Query 101988 TGCAAGCGTTCAGTGCTTTAATGGTATCAACGAAATTATACCACCGCGTTCTTCGATACA 102047 ||| | ||| ||||| || || || |||||||||| | || ||||| | | | Sbjct 86875 TGCCAACGTGCAGTGTTTGAACGGCGTCAACGAAATCGTTCCGCCGCGCGCCAGCGTCAA 86816 Query 102048 ACGATATTTTGGCCGGCAGCTGAGCAACATTAAAGTGTGGAATACACGTCATCCTAATAT 102107 || || | ||||||| | || ||||| | | |||| || || || || || || Sbjct 86815 CCGCTACTACGGCCGGCGGGTGGGCAACGTGCGCGCCTGGACCACGCGACACCCCAACAT 86756 Query 102108 TTCACAGTTGTCCACTCAAATTTCAAGAGTTGTCGCGCATGACACTCAA-GAATATAAC- 102165 ||| || ||| || | ||||| | || ||||| || | ||| Sbjct 86755 CAGCCAGCTGAGCACGCA----------GGTGTCGGACGTGCGCCTCAACGACTCCAACA 86706 Query 102166 -----TGGAATATAAAAGTTGGTTTAGGTACTTTTGTTGGAGCCAATCGTGACTGCGACG 102220 ||||| | ||||| || || || | ||| || ||||| || ||||| | Sbjct 86705 CCGATTGGAACGTCAAAGTGGGCTTGGGCATATTTCCGGGCGCCAACACCGATTGCGATG 86646 Query 102221 GCGACAAAGAGGTCATCACTTATTTACCGTATCCGAATTCTTTAATTGATCTGGAATCGT 102280 |||||||| | ||||||| | | | ||| | || || | | || || ||||| | | Sbjct 86645 GCGACAAAAAAATCATCACCTTTCTGCCGCAACCCAACAGTCTCATCGACCTGGAGTGTT 86586 Query 102281 TATTGTACTGCGACCCCGTGTTTAGTTTCATATGTTTTGACAAAAATAAATTGGCCTTTG 102340 |||||||| ||||||| ||||| ||||||||| || ||||| ||| | | ||| | Sbjct 86585 TATTGTACGGCGACCCGCGGTTTAATTTCATATGCTTCGACAAGAATCGACTCAGCTTCG 86526 Query 102341 TCTCGCAGCAAATATACTATTTGCACAAAAACATTGA 102377 | || || ||||| |||||| || |||||||||||| Sbjct 86525 TGTCCCAACAAATTTACTATCTGTTCAAAAACATTGA 86489 Score = 114 bits (126), Expect = 1e-20 Identities = 265/397 (67%), Gaps = 23/397 (6%) Strand=Plus/Minus Query 110935 CCGTTGCGCACACAATGCAAACCCTCGGGTAAACGATTTCCCATAAACGACTGATTTATA 110994 |||||||||| || ||||||| || | | ||||| |||| |||||||||||| | Sbjct 99217 CCGTTGCGCATCCATTGCAAACTTTCCGCCATGCGATTGCCCACAAACGACTGATTCTTG 99158 Query 110995 CTCCATTGATCGAGACGTGTTCCTTCCAATTTTTCATAACCCGTAATACTGCGACCTATA 111054 |||| || |||| ||| || || |||| |||||| | ||||| ||| || Sbjct 99157 GTCCACTGGTCGAAACGCGTGCCCTCCACTTTTTCGTGGCCCGTGTGGTTGCTCTTGATG 99098 Query 111055 AATTCTTTGTAAATGTTATCCGGTGTGTTGTTGAAGAACATGTAAGGTATAAGATATATG 111114 || |||||| | ||||| || || |||||||| || |||||||| ||||| | ||||| Sbjct 99097 AACTCTTTGAATATGTTGTCGGGAGTGTTGTTAAACAACATGTACGGTATGTTAAATATG 99038 Query 111115 GGATA------CACTCTACCGTTAACATAA-----------CACAATTTAGTT--GGTAA 111155 ||||| | | | || || || ||| | || || | | | Sbjct 99037 GGATAGCGCGGCGCGTTCGGGTCGGCAAAATTTCCACCGCGCACCACGTACTTGCGCTCA 98978 Query 111156 A--TTATCAAAATTAGACTGCCTGGACAAAAAGGAAATGGGCGATAGGCAAATTTGAGCG 111213 | | ||||| || ||||| | |||| ||| || | |||||| ||||| ||||| ||| Sbjct 98977 ATGTCGTCAAAGTTGGACTGGCGCGACAGAAACGAGACGGGCGACAGGCAGATTTGTGCG 98918 Query 111214 TGCACTCCGTCGTCGGACGCCCATTTAGATAAATCCTCCGCT-TCGTTTAAAACACCTTT 111272 ||| ||||| || | | ||| | | | || || |||| | ||| || || || || Sbjct 98917 TGCGTGCCGTCTTCCGCCATCCACTCGGTCAGAT-CTTCGCTCTTGTTGAACACCCCCTT 98859 Query 111273 CTGACCGTGGATACCGCATATTTTTAAACCTTCCAAA 111309 || |||||||| ||||| ||||| | || || ||| Sbjct 98858 TTGGCCGTGGATGCCGCAAATTTTGACGCCCTCTAAA 98822 Score = 107 bits (118), Expect = 2e-18 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 54954 ATATGGGAGCGCGGCTACGAAGACTATTATACATTAGGTCAACAGTTGAGCATCCGCATG 55013 || |||||||| |||||||| ||| |||| || | || |||||||||||||| ||||| Sbjct 101856 ATGTGGGAGCGAGGCTACGAGGACAATTACACGCTCGGCCAACAGTTGAGCATTCGCATC 101915 Query 55014 ACCACGAATTTGATACAAAGCGGGCTTGATTTTAAACATCAA 55055 ||||| || ||||||| |||||| | ||||||||||||||| Sbjct 101916 ACCACCAAACTGATACAGAGCGGGTTGGATTTTAAACATCAA 101957 Score = 107 bits (118), Expect = 2e-18 Identities = 205/299 (69%), Gaps = 10/299 (3%) Strand=Plus/Plus Query 178 GAAGATCCATTCCGTGGGCCTGGTAAAAATGTTAAAATTACTTTATTCAAAGAAATTCGT 237 ||||| || ||| ||||| || ||||| || | ||||| |||||||| ||||| Sbjct 136674 GAAGACCCCTTCACCGGGCCCGGCAAAAACCAAAAGCTAACTTTGTTCAAAGAGATTCGC 136733 Query 238 CGCATTCAGCCAGATACAATGAAATTGGTGTGCAACTGGAGTGGCAAGGAATTTTTGCGT 297 | |||| || || ||||| ||||| ||||||||| ||||| || ||||||||| Sbjct 136734 AATGTGAAGCCGGACACGATGAAGCTGGTGCTCAACTGGAGCGGCAAAGAGTTTTTGCGT 136793 Query 298 GAAACCTGGACGCGTTTCATTTCCGAAGA---GTTTCCCATCACCACCGACCAAGAAATT 354 ||||| ||||| |||||| | ||| || |||||||| || |||||| || | Sbjct 136794 GAAACTTGGACCCGTTTCGT---CGAGGACAGTTTTCCCATTGTCAACGACCAGGAGGTG 136850 Query 355 ATGGATCTGTGGTTTGAATTGCAACTGCGACCAATGCAGCCCAACAGATGTTACAAATTT 414 ||||| ||| | | | | ||| |||| | | ||||||| | |||||||| ||| Sbjct 136851 ATGGACGTGTTTCTCGTGATCAACCTGAGACCCACTCGGCCCAACCGTTGTTACAAGTTT 136910 Query 415 ACAATGCAATACGCCCTGGCCGCT--AACCCAGACTACGTTGCTCATGACGTGATTCGC 471 ||| |||| || ||| | || | || ||||| | || || ||||||||| Sbjct 136911 TTGGCTCAACACGCGCT--CCGTTGGGACGCCGAGTACGTGCCGCACGAAGTGATTCGC 136967 Score = 93.3 bits (102), Expect = 4e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || |||| || || ||||||| || | ||| ||||||||||| || || ||||| Sbjct 105938 CCGCCTCGCAATCGCAACACCATGTGCACGGTGGCTTCTTTTTGTATGTTGTAGTCGGCG 105997 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 | ||| ||||| || ||||||||||||||| | || || ||||| || ||| |||| Sbjct 105998 ATCGTTTTGTCGTCTTCGAGCTGTTTGCCCGCATAGATGAGTCGCTGTTGATCGACGGGC 106057 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGA 39208 || | |||||||| ||||| ||||||| Sbjct 106058 ACACCTTCTTTGTCGGCAATTTTTTGTTTGA 106088 >seq21476 Length=1652 Score = 93.3 bits (102), Expect = 4e-14 Identities = 224/330 (68%), Gaps = 8/330 (2%) Strand=Plus/Plus Query 14715 AATTTGATAGCTACAACGATTACGTGGTGGCGGCGACATATTTTGACGGAAAGAAGGTGA 14774 ||||||| | ||||| |||||| | |||| | |||||||| |||| | | Sbjct 839 AATTTGACAAATACAATGATTACATTCTGGCTTTAAATTATTTTGATTCAAAGGCTATTA 898 Query 14775 ACTACAACAGCGGTTTGTTTTACTATGTTCTGTGGAA-AT-TGTGCAGCGCCAAAAAGTG 14832 | || || | ||||||||||| ||||| ||||||| || |||| | || || || || Sbjct 899 AATATAATAAGGGTTTGTTTTATTATGTATTGTGGAATATATGTG-ATCGTAAAGAA-TG 956 Query 14833 GATGAACCAAAATGTGCTTGACCAATTTTG-GAA-ATACGTTAAACTTCGCTTACAAAAC 14890 |||| ||| |||||| | || |||| ||| ||| ||||| | | | |||| Sbjct 957 GATGGACCGAAATGTTGTAGAAAAATTCAAAGAATATATGTTAAGGCGTGTTACCGAAAC 1016 Query 14891 ACTACATGCAAGCTAGGTCTTTCGTCGCTTCCTATGGACCCGCCCATGAAAACATCACTA 14950 | | |||| | | ||||| | || |||||| |||| || || |||| |||||| Sbjct 1017 A--AAATGCTATATTGGTCTGACCTCCCTTCCTTTGGATCCCTTAATACAAACGTCACTA 1074 Query 14951 CTAACAGCCCTGTGGTACTGTGTTGAGTTGTCGTCCGACATATTTAAACACGACCAATTA 15010 | |||| || ||||| ||||| || | || || ||||||||||| |||| | Sbjct 1075 CCTGCAGCTCTCTGGTATTGTGTAGAAATTTCATCATACATATTTAAAGACGATGACGCG 1134 Query 15011 CATTACACCAATGAAAGACTGCGACTTTAT 15040 |||||| |||| ||||| ||| | |||| Sbjct 1135 CATTACTCCAAAGAAAGGTTGCAAAATTAT 1164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428707546332692