Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20ismenius_20[genbank_20GCA_5F001485965.1_202015-12-16] 160,084 sequences; 259,837,422 total letters Query= NC_031915.1 Length=37395 Score E Sequences producing significant alignments: (Bits) Value seq1464 138 3e-28 seq3145 116 9e-22 seq1539 111 4e-20 seq640 80.6 6e-11 >seq1464 Length=66918 Score = 138 bits (152), Expect = 3e-28 Identities = 234/337 (69%), Gaps = 8/337 (2%) Strand=Plus/Minus Query 28885 ACGGCTTTCCAACAGTTGAAAATTACTGGCAACAACTTCTGTGACATAAACACGTTGACC 28944 ||| |||||||| | ||| || || ||||| |||||||| || || |||||||| || Sbjct 18171 ACGACTTTCCAATAATTGGAAGTTTTCAGCAACTACTTCTGTTACGTACACACGTTGTCC 18112 Query 28945 TTGCTGGTTATCATAGCTACGTGTTTGAATTACTCCTGTAACTCCGATAAGAGAGCCTTT 29004 ||| || |||||||| ||| |||||||| || || || || | ||||| ||||| Sbjct 18111 TTGTTGATTATCATAAGAACGCGTTTGAATACGACCAGTTACACCTAAAAGAGTTCCTTT 18052 Query 29005 TTTAGCCCAATTAACAAGATTTTCAGCTGACTGTCTCCAGATAACGCAATTGATAAAATC 29064 | || | || | || |||| ||||| | || ||| || || ||||| |||||||| Sbjct 18051 ATGTGCATAGTTTGCTAGTGTTTCTGCTGATTTTCGCCAAATCACACAATTAATAAAATC 17992 Query 29065 AGCCTCACGCTCTCCAGCCTCGTTCTTAAATGGACGGTTTACAGCAAGAGTAAACGTAGC 29124 |||||||| | || | | || | || ||| || ||||| | ||| ||||| || Sbjct 17991 CGCCTCACGGTTGCCGTTTTGGCTCGTGAAGTTACGATTGACAGCTAAAGTGAACGTTGC 17932 Query 29125 AACCGCAAT---ATTAGATTGCGTGTATCTCAGTTCGGCATCTCTTGTAAGTCGCCCTAC 29181 || ||| | | | ||| || |||| | || | |||| |||| || || || || Sbjct 17931 TACAGCAGTGCCACTTGAT---GTATATCGTAAATCTGGATCTTTTGTCAGACGTCCAAC 17875 Query 29182 TAAAACAACGTTATTTATCATTTTG--CACCTCCTCT 29216 || ||||||||||| |||| || || ||||||| Sbjct 17874 TAGTACAACGTTATTAATCAAAATGGTCATCTCCTCT 17838 >seq3145 Length=45091 Score = 116 bits (128), Expect = 9e-22 Identities = 168/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 28891 TTCCAACAGTTGAAAATTACTGGCAACAACTTCTGTGACATAAACACGTTGACCTTGCTG 28950 |||||||| ||||||||| || |||||||| || |||||||||||||| |||||||| Sbjct 2105 TTCCAACAATTGAAAATTCTCTGCTACAACTTCCGTTACATAAACACGTTGCCCTTGCTG 2046 Query 28951 GTTATCATAGCTACGTGTTTGAATTACTCCTGTAACTCCGATAAGAGAGCCTTTTTTAGC 29010 || ||||| ||||||||||||| ||| || || || | | | || | ||| Sbjct 2045 ATTGTCATAAGAACGTGTTTGAATTCGTCCGGTCACGCCTAGCAAGGTTCCCCTGCGAGC 1986 Query 29011 CCAATTAACAAGATTTTCAGCTGACTGTCTCCAGATAACGCAATTGATAAAATCAGCCTC 29070 ||||| | || |||| |||| | ||||| || || || | | || || || || Sbjct 1985 ATAATTAGCCAGTGTTTCCGCTGGTTTCCTCCAAATCACACATTGAACGAAGTCTGCTTC 1926 Query 29071 ACGCTCTCCAGCCTCGTTCTTAAATGGACGGTTTACAGCAAGAGTAAACGTAGCAAC 29127 ||||||||| || | || |||| || || || ||||| ||||| ||||| || Sbjct 1925 ACGCTCTCCGGCTTGATTGGTAAAGTTTCGATTAACTGCAAGGGTAAATGTAGCCAC 1869 >seq1539 Length=57711 Score = 111 bits (122), Expect = 4e-20 Identities = 217/318 (68%), Gaps = 2/318 (1%) Strand=Plus/Plus Query 28889 CTTTCCAACAGTTGAAAATTACTGGCAACAACTTCTGTGACATAAACACGTTGACCTTGC 28948 ||||| || ||||| |||||| ||| |||||||| || || || ||||| || |||||| Sbjct 15860 CTTTCTAATAGTTGGAAATTATCGGCCACAACTTCAGTCACGTAGACACGCTGTCCTTGC 15919 Query 28949 TGGTTATCATAGCTACGTGTTTGAATTACTCCTGTAACTCCGATAAGAGAGCCTTTTTTA 29008 ||||| ||||| | || |||||||| ||| || ||||| | | || |||||| Sbjct 15920 TGGTTGTCATAAGTCCGCGTTTGAATCCGTCCGACGACGCCGATTAAACTACCCTTTTTA 15979 Query 29009 GCCCAATTAACAAGATTTTCAGCTGACTGTCTCCAGATAACGCAATTGATAAAATCAGCC 29068 || | || | | |||| |||| | | ||| || || ||||||||||||||||| Sbjct 15980 GCTAATGTAGCCATCGTTTCCGCTGGTTTACGCCAAATCACACAATTGATAAAATCAGCT 16039 Query 29069 TCACGCTCTCCAGCCTCGTTCTTAAATGGACGGTTTACAGCAAGAGTAAACGTAGCAACC 29128 || || | || | ||| |||| || || || || | ||||| || || || Sbjct 16040 TCTCGATTGCCGTTTTGATTCGTAAAATTGCGATTAACGGCTAAGGTAAAAGTGGCCACT 16099 Query 29129 GCAATATTAGATTGC-GTGTATCTCAGTTCGGCATCTCTTGTAAGTCGCCCTACTAAAAC 29187 || | | |||| || || | | |||| |||| | || | || ||||||||| Sbjct 16100 GCTGTGCCA-CTTGCGGTATAACGTAAATCGGGATCTTTGGTTAACCGTCCTACTAAAGT 16158 Query 29188 AACGTTATTTATCATTTT 29205 || ||||| |||||||| Sbjct 16159 TACATTATTGATCATTTT 16176 >seq640 Length=68089 Score = 80.6 bits (88), Expect = 6e-11 Identities = 79/101 (78%), Gaps = 6/101 (6%) Strand=Plus/Plus Query 28047 TTCCAACAAGCGTT---GCCATTTGTCATCGCACTAGCATTTGACCAACTCTCACATGGT 28103 ||||| |||||||| |||||| ||| ||||| || ||||||||||| |||||| Sbjct 13587 TTCCAGCAAGCGTTACCGCCATT---CATGGCACTCGCTACAGACCAACTCTCGCATGGT 13643 Query 28104 GGACTTGCTATGATTAAATCTGGATGTGGTAGCTTGTCAAG 28144 ||||||||||| |||| ||| || | ||| || || ||||| Sbjct 13644 GGACTTGCTATAATTACATCAGGTTTTGGAAGTTTTTCAAG 13684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119315150196456