Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= AC_000005.1 Length=34125 Score E Sequences producing significant alignments: (Bits) Value seq3063 289 6e-74 >seq3063 Length=7092 Score = 289 bits (320), Expect = 6e-74 Identities = 316/420 (75%), Gaps = 0/420 (0%) Strand=Plus/Plus Query 10827 GTAACAGCATATGAACAAACGGTTACAGAGGAACGTAACTTTCAAAAAAGCTTTAATAAC 10886 || || || || || || ||||| | |||| ||||||||||||||||||||| ||| Sbjct 6673 GTTACCGCGTACGAGCAGACGGTGAACCAGGAGATTAACTTTCAAAAAAGCTTTAACAAC 6732 Query 10887 CATGTGCGCACACTAATAGCGCGAGAAGAAGTAGCCATTGGTTTAATGCATCTTTGGGAC 10946 || |||||||| || | ||||| || || || || || || | |||||||| |||||| Sbjct 6733 CACGTGCGCACGCTTGTGGCGCGCGAGGAGGTGGCTATAGGACTGATGCATCTGTGGGAC 6792 Query 10947 TTTGTAGAAGCTTATGTACATAATCCAGCAAGTAAACCCCTAACTGCCCAGCTGTTCTTA 11006 |||||| || | || || ||| || || || || | || ||||||||| | Sbjct 6793 TTTGTAAGCGCGCTGGAGCAAAACCCAAATAGCAAGCCGCTCATGGCGCAGCTGTTCCTT 6852 Query 11007 ATAGTTCAACATAGTAGAGACAATGAAACTTTTAGGGATGCAATGCTTAACATAGCTGAA 11066 ||||| || || || || ||||| || | || |||||||| |||| ||||||| || Sbjct 6853 ATAGTGCAGCACAGCAGGGACAACGAGGCATTCAGGGATGCGCTGCTAAACATAGTAGAG 6912 Query 11067 CCCCAGGGTCGGTGGTTACTCGATTTAATTAACATTCTGCAGAGCATTGTGGTTCAGGAA 11126 ||| |||| || ||| | |||||||| || ||||||||||||||||| ||||| ||||| Sbjct 6913 CCCGAGGGCCGCTGGCTGCTCGATTTGATAAACATTCTGCAGAGCATAGTGGTGCAGGAG 6972 Query 11127 CGCAGTCTTAGTTTGGCAGACAAGGTGGCCGCCATTAATTACTCCATGTTAAGTTTGGGA 11186 ||||| | || |||| |||||||||||||||||||| || |||||| | ||| |||| Sbjct 6973 CGCAGCTTGAGCCTGGCTGACAAGGTGGCCGCCATTAACTATTCCATGCTCAGTCTGGGC 7032 Query 11187 AAGTTTTATGCTCGTAAAATCTACAAAAGTCCGTATGTTCCCATTGACAAGGAAGTGAAG 11246 |||||||| || || || || ||| | | || || |||||||| |||||||| || ||| Sbjct 7033 AAGTTTTACGCCCGCAAGATATACCATACCCCTTACGTTCCCATAGACAAGGAGGTAAAG 7092 Score = 107 bits (118), Expect = 4e-19 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 14988 CCAACATCCAGTGCGCGTACGCGGACATTACCGAGCTCCATGGGGCGCGCATACCCGAGG 15047 |||||| ||||||||||| ||||| || ||||| || || ||||||||||| | || || Sbjct 41 CCAACACCCAGTGCGCGTGCGCGGGCACTACCGCGCGCCCTGGGGCGCGCACAAACGCGG 100 Query 15048 ACGCACTGGTCGCACCACTGTAGACGATGTTATTGACTCGGTAGTGGCCGATGCTCGCAA 15107 |||||||| |||||||| || || || | |||||| |||| |||| || || ||||| Sbjct 101 CCGCACTGGGCGCACCACCGTCGATGACGCCATTGACGCGGTGGTGGAGGAGGCGCGCAA 160 Query 15108 GTAC 15111 ||| Sbjct 161 CTAC 164 Score = 102 bits (112), Expect = 2e-17 Identities = 141/193 (73%), Gaps = 7/193 (4%) Strand=Plus/Plus Query 15680 GCGCCCAGACGTAGGGTACAGTGGAAGGGACGGCAAGTAAAACGCATTTTGCGACCGGGC 15739 |||||||| || ||||||||||||| || || | |||| ||| |||||||||| ||| Sbjct 792 GCGCCCAGGCGGCGGGTACAGTGGAAAGGTCGACGCGTAAGACGTGTTTTGCGACCCGGC 851 Query 15740 ACCACAGTGGTTTTTTCTCCCGGAGAGCGAACGATTATGCGTCCCCTA-AAGCGCGAGTA 15798 ||||| || |||||| | ||||| ||||| | | | | |||| ||||||| ||| Sbjct 852 ACCACCGTAGTTTTTACGCCCGGTGAGCGCTCCA----CCCGCACCTACAAGCGCGTGTA 907 Query 15799 CGACGAAGTGTACGCAGACGATGACATTTTGGAGCAAGCGGCACAACAGACT-GGGGAAT 15857 || || ||||||| ||||| ||| | | ||||| || || | | || ||||| | Sbjct 908 TGATGAGGTGTACGGCGACGAGGACCTGCTTGAGCAGGC-CAACGAGCGCCTCGGGGAGT 966 Query 15858 TTGCATATGGAAA 15870 |||| || ||||| Sbjct 967 TTGCCTACGGAAA 979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109072818526446