Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= AC_000006.1 Length=35100 Score E Sequences producing significant alignments: (Bits) Value seq3063 408 9e-110 >seq3063 Length=7092 Score = 408 bits (452), Expect = 9e-110 Identities = 343/421 (81%), Gaps = 0/421 (0%) Strand=Plus/Plus Query 11014 GGTGACGGCCTACGAGCAGACGGTGAAGCAGGAGCGCAACTTCCAAAAGAGTTTCAACAA 11073 ||| || || ||||||||||||||||| |||||| ||||| ||||| || || ||||| Sbjct 6672 GGTTACCGCGTACGAGCAGACGGTGAACCAGGAGATTAACTTTCAAAAAAGCTTTAACAA 6731 Query 11074 CCATGTGCGCACCCTGATCGCGCGCGAGGAGGTGGCCCTGGGCCTGATGCACCTGTGGGA 11133 ||| |||||||| || | ||||||||||||||||| | || |||||||| |||||||| Sbjct 6732 CCACGTGCGCACGCTTGTGGCGCGCGAGGAGGTGGCTATAGGACTGATGCATCTGTGGGA 6791 Query 11134 CCTGGCGGAGGCCATCGTGCAGAACCCGGACAGCAAGCCTCTGACGGCGCAGCTGTTCCT 11193 | | | || | | ||| ||||| | |||||||| || | ||||||||||||||| Sbjct 6792 CTTTGTAAGCGCGCTGGAGCAAAACCCAAATAGCAAGCCGCTCATGGCGCAGCTGTTCCT 6851 Query 11194 GGTGGTACAGCACAGCAGGGACAACGAGGCGTTCAGGGAGGCGCTGCTAAACATCGCCGA 11253 | || ||||||||||||||||||||||| |||||||| |||||||||||||| | || Sbjct 6852 TATAGTGCAGCACAGCAGGGACAACGAGGCATTCAGGGATGCGCTGCTAAACATAGTAGA 6911 Query 11254 GCCCGAGGGTCGCTGGCTGCTGGAGCTGATCAACATCTTGCAGAGCATCGTAGTTCAGGA 11313 ||||||||| ||||||||||| || |||| ||||| |||||||||| || || ||||| Sbjct 6912 GCCCGAGGGCCGCTGGCTGCTCGATTTGATAAACATTCTGCAGAGCATAGTGGTGCAGGA 6971 Query 11314 GCGCAGCCTGAGCTTGGCCGAGAAGGTGGCGGCAATCAACTACTCGGTGCTTAGCCTGGG 11373 ||||||| ||||| |||| || |||||||| || || ||||| || |||| || ||||| Sbjct 6972 GCGCAGCTTGAGCCTGGCTGACAAGGTGGCCGCCATTAACTATTCCATGCTCAGTCTGGG 7031 Query 11374 CAAGTTTTACGCGCGCAAGATTTACAAGACGCCGTACGTGCCCATAGACAAGGAGGTGAA 11433 |||||||||||| |||||||| ||| | || || ||||| ||||||||||||||||| || Sbjct 7032 CAAGTTTTACGCCCGCAAGATATACCATACCCCTTACGTTCCCATAGACAAGGAGGTAAA 7091 Query 11434 G 11434 | Sbjct 7092 G 7092 Score = 123 bits (136), Expect = 6e-24 Identities = 273/405 (67%), Gaps = 31/405 (8%) Strand=Plus/Plus Query 15699 ATGTCAAAGCGCATCTACAAG--AGAGATGCTCCAGGTCGTCGCCCCGGAGATTTACGGA 15756 ||||| ||||||| ||| |||||||||||||||| |||| |||||||| || || Sbjct 618 ATGTCCAAGCGCAAAATCAAAGAAGAGATGCTCCAGGTCATCGCGCCGGAGATCTATGGC 677 Query 15757 CCACCCCAGGCGGACCAG---------AAACCCCGCAAAATCAAGCGGGTTaaaaa---- 15803 || || || ||| || || ||||| || | |||||||| ||||| Sbjct 678 CCCCCGAAGAAGGAAGAGCAGGATTACAAGCCCCGAAAGCTAAAGCGGGTCAAAAAGAAA 737 Query 15804 ---aaaG--GATGAGG-TGGAC--GAGGGGGCAGTAGAGTTTGTGCGCGAGTTCGCTCCG 15855 |||| ||||| | || || || | | || || | ||| || ||| || Sbjct 738 AAGAAAGATGATGATGATGAACTTGACGACGAGGTGGAACTGCTGCACGCAACCGCGCCC 797 Query 15856 CGGCGGCGCGTAAATTGGAAGGGGCGCAG-GTGC-ACGCGTGTTGCGGCCCGGCACGGCG 15913 ||||||| ||| | ||||| || || | || ||| || ||||| |||||||| | Sbjct 798 AGGCGGCGGGTACAGTGGAAAGGTCGACGCGTAAGACGTGTTTTGCGACCCGGCACCACC 857 Query 15914 GTGGTGTTCACGCCCGGCGAGCGGTCCTCGGTCAGGAGCAAGCGTAGCTATGACGAGGTG 15973 || || || |||||||| ||||| ||| | || |||||| ||||| |||||| Sbjct 858 GTAGTTTTTACGCCCGGTGAGCGCTCCACCCGCACCTACAAGCGCGTGTATGATGAGGTG 917 Query 15974 TACGGCGACGACGACATCCTGGACCAGGCGGCAGAGCGGGCGGGCGAGTTTGCCTACGGG 16033 ||||||||||| ||| | || || ||||| ||||| || |||||||||||||| Sbjct 918 TACGGCGACGAGGACCTGCTTGAGCAGGCCAACGAGCGCCTCGGGGAGTTTGCCTACGGA 977 Query 16034 AAGCGGTCGCGCGAAGAGGAGCTGATCTCGCTGCCGCTGGACGAG 16078 |||||| | |||| || | || |||||||||||||| Sbjct 978 AAGCGG------CATAAGGACATGTTGGCGTTGCCGCTGGACGAG 1016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 112192658877996