Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= AC_000007.1 Length=35937 Score E Sequences producing significant alignments: (Bits) Value seq3063 1653 0.0 >seq3063 Length=7092 Score = 1653 bits (1832), Expect = 0.0 Identities = 971/1021 (95%), Gaps = 3/1021 (0%) Strand=Plus/Plus Query 15922 TCCCAAGCAAGATGTTTGGCGGGGCAAAGAAGCGCTCCGACCAACACCCAGTGCGCGTGC 15981 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TCCCAAGCAAGATGTTTGGCGGGGCAAAGAAGCGCTCCGACCAACACCCAGTGCGCGTGC 60 Query 15982 GCGGGCACTACCGCGCGCCCTGGGGCGCGCACAAACGCGGCCGCACTGGGCGCACCACCG 16041 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GCGGGCACTACCGCGCGCCCTGGGGCGCGCACAAACGCGGCCGCACTGGGCGCACCACCG 120 Query 16042 TCGATGACGCCATTGACGCGGTGGTGGAGGAGGCGCGCAACTACACGCCCACGCCGCCAC 16101 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TCGATGACGCCATTGACGCGGTGGTGGAGGAGGCGCGCAACTACACGCCCACGCCGCCAC 180 Query 16102 CAGTGTCCACAGTGGACGCGGCCATTCAGACCGTGGTGCGCGGAGCCCGGCGTTATGCTA 16161 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CAGTGTCCACAGTGGACGCGGCCATTCAGACCGTGGTGCGCGGAGCCCGGCGTTATGCTA 240 Query 16162 AAATGAAGAGACGGCGGAGGCGCGTAGCACGTCGCCACCGCCGCCGACCCGGCACTGCCG 16221 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 AAATGAAGAGACGGCGGAGGCGCGTAGCACGTCGCCACCGCCGCCGACCCGGCACTGCCG 300 Query 16222 CCCAACGCGCGGCGGCGGCCCTGCTTAACCGCGCACGTCGCACCGGCCGACGGGCGGCCA 16281 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CCCAACGCGCGGCGGCGGCCCTGCTTAACCGCGCACGTCGCACCGGCCGACGGGCGGCCA 360 Query 16282 TGCGGGCCGCTCGAAGGCTGGCCGCGGGTATTGTCACTGTGCCCCCCAGGTCCAGGCGAC 16341 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TGCGGGCCGCTCGAAGGCTGGCCGCGGGTATTGTCACTGTGCCCCCCAGGTCCAGGCGAC 420 Query 16342 GAGCGNNNNNNNNNNNNNNNNNNNCCATTAGTGCTATGACTCAGGGTCGCAGGGGCAACG 16401 ||||| |||||||||||||||||||||||||||||||||||| Sbjct 421 GAGCGGCCGCCGCAGCAGCCGCGGCCATTAGTGCTATGACTCAGGGTCGCAGGGGCAACG 480 Query 16402 TGTACTGGGTGCGCGACTCGGTTAGCGGCCTGCGCGTGCCCGTGCGCACCCGCCCCCCGC 16461 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 481 TGTACTGGGTGCGCGACTCGGAATTCGGCCTGCGCGTGCCCGTGCGCACCCGCCCCCCGC 540 Query 16462 GCAACTAGATTGCAAGAAAAAACTACTTAGACTCGTACTGTTGTATGTATCCAGCGGCGG 16521 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 GCAACTAGATTGCAAGAAAAAACTACTTAGACTCGTACTGTTGTATGTATCCAGCGGCGG 600 Query 16522 CGGCGCGCAACGAAGCTATGTCCAAGCGCAAAATCAAAGAAGAGATGCTCCAGGTCATCG 16581 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 CGGCGCGCAACGAAGCTATGTCCAAGCGCAAAATCAAAGAAGAGATGCTCCAGGTCATCG 660 Query 16582 CGCCGGAGATCTATGGCCCCCCGAAGAAGGAAGAGCAGGATTACAAGCCCCGAAAGCTAA 16641 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 CGCCGGAGATCTATGGCCCCCCGAAGAAGGAAGAGCAGGATTACAAGCCCCGAAAGCTAA 720 Query 16642 AGCGGGTCAAAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGACGACGAGGTGGAAC 16701 |||||||||||||| ||||||||||||||||||| Sbjct 721 AGCGGGTCAAAAAG---AAAAAGAAAGATGATGATGATGAACTTGACGACGAGGTGGAAC 777 Query 16702 TGCTGCACGCAACCGCGCCCAGGCGGCGGGTACAGTGGAAAGGTCGACGCGTAAGACGTG 16761 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 778 TGCTGCACGCAACCGCGCCCAGGCGGCGGGTACAGTGGAAAGGTCGACGCGTAAGACGTG 837 Query 16762 TTTTGCGACCCGGCACCACCGTAGTTTTTACGCCCGGTGAGCGCTCCACCCGCACCTACA 16821 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 838 TTTTGCGACCCGGCACCACCGTAGTTTTTACGCCCGGTGAGCGCTCCACCCGCACCTACA 897 Query 16822 AGCGCGTGTATGATGAGGTGTACGGCGACGAGGACCTGCTTGAGCAGGCCAACGAGCGCC 16881 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 898 AGCGCGTGTATGATGAGGTGTACGGCGACGAGGACCTGCTTGAGCAGGCCAACGAGCGCC 957 Query 16882 TCGGGGAGTTTGCCTACGGAAAGCGGCATAAGGACATGTTGGCGTTGCCGCTGGACGAGG 16941 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 958 TCGGGGAGTTTGCCTACGGAAAGCGGCATAAGGACATGTTGGCGTTGCCGCTGGACGAGG 1017 Query 16942 G 16942 | Sbjct 1018 G 1018 Score = 755 bits (836), Expect = 0.0 Identities = 420/421 (99%), Gaps = 0/421 (0%) Strand=Plus/Plus Query 11507 GGTAACCGCGTACGAGCAGACGGTGAACCAGGAGATTAACTTTCAAAAAAGCTTTAACAA 11566 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6672 GGTTACCGCGTACGAGCAGACGGTGAACCAGGAGATTAACTTTCAAAAAAGCTTTAACAA 6731 Query 11567 CCACGTGCGCACGCTTGTGGCGCGCGAGGAGGTGGCTATAGGACTGATGCATCTGTGGGA 11626 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6732 CCACGTGCGCACGCTTGTGGCGCGCGAGGAGGTGGCTATAGGACTGATGCATCTGTGGGA 6791 Query 11627 CTTTGTAAGCGCGCTGGAGCAAAACCCAAATAGCAAGCCGCTCATGGCGCAGCTGTTCCT 11686 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6792 CTTTGTAAGCGCGCTGGAGCAAAACCCAAATAGCAAGCCGCTCATGGCGCAGCTGTTCCT 6851 Query 11687 TATAGTGCAGCACAGCAGGGACAACGAGGCATTCAGGGATGCGCTGCTAAACATAGTAGA 11746 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6852 TATAGTGCAGCACAGCAGGGACAACGAGGCATTCAGGGATGCGCTGCTAAACATAGTAGA 6911 Query 11747 GCCCGAGGGCCGCTGGCTGCTCGATTTGATAAACATTCTGCAGAGCATAGTGGTGCAGGA 11806 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6912 GCCCGAGGGCCGCTGGCTGCTCGATTTGATAAACATTCTGCAGAGCATAGTGGTGCAGGA 6971 Query 11807 GCGCAGCTTGAGCCTGGCTGACAAGGTGGCCGCCATTAACTATTCCATGCTCAGTCTGGG 11866 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6972 GCGCAGCTTGAGCCTGGCTGACAAGGTGGCCGCCATTAACTATTCCATGCTCAGTCTGGG 7031 Query 11867 CAAGTTTTACGCCCGCAAGATATACCATACCCCTTACGTTCCCATAGACAAGGAGGTAAA 11926 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7032 CAAGTTTTACGCCCGCAAGATATACCATACCCCTTACGTTCCCATAGACAAGGAGGTAAA 7091 Query 11927 G 11927 | Sbjct 7092 G 7092 Score = 84.2 bits (92), Expect = 5e-12 Identities = 46/46 (100%), Gaps = 0/46 (0%) Strand=Plus/Plus Query 10671 TCGAACCCCGGATCCGGCCGTCCGCCGTGATCCATGCGGTTACCGC 10716 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6635 TCGAACCCCGGATCCGGCCGTCCGCCGTGATCCATGCGGTTACCGC 6680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114870921825942