Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= AC_000008.1 Length=35938 Score E Sequences producing significant alignments: (Bits) Value seq3063 1622 0.0 >seq3063 Length=7092 Score = 1622 bits (1798), Expect = 0.0 Identities = 962/1018 (94%), Gaps = 0/1018 (0%) Strand=Plus/Plus Query 15927 TCCCAAGCAAGATGTTTGGCGGGGCCAAGAAGCGCTCCGACCAACACCCAGTGCGCGTGC 15986 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1 TCCCAAGCAAGATGTTTGGCGGGGCAAAGAAGCGCTCCGACCAACACCCAGTGCGCGTGC 60 Query 15987 GCGGGCACTACCGCGCGCCCTGGGGCGCGCACAAACGCGGCCGCACTGGGCGCACCACCG 16046 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GCGGGCACTACCGCGCGCCCTGGGGCGCGCACAAACGCGGCCGCACTGGGCGCACCACCG 120 Query 16047 TCGATGACGCCATCGACGCGGTGGTGGAGGAGGCGCGCAACTACACGCCCACGCCGCCAC 16106 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TCGATGACGCCATTGACGCGGTGGTGGAGGAGGCGCGCAACTACACGCCCACGCCGCCAC 180 Query 16107 CAGTGTCCACAGTGGACGCGGCCATTCAGACCGTGGTGCGCGGAGCCCGGCGCTATGCTA 16166 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 181 CAGTGTCCACAGTGGACGCGGCCATTCAGACCGTGGTGCGCGGAGCCCGGCGTTATGCTA 240 Query 16167 AAATGAAGAGACGGCGGAGGCGCGTAGCACGTCGCCACCGCCGCCGACCCGGCACTGCCG 16226 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 AAATGAAGAGACGGCGGAGGCGCGTAGCACGTCGCCACCGCCGCCGACCCGGCACTGCCG 300 Query 16227 CCCAACGCGCGGCGGCGGCCCTGCTTAACCGCGCACGTCGCACCGGCCGACGGGCGGCCA 16286 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CCCAACGCGCGGCGGCGGCCCTGCTTAACCGCGCACGTCGCACCGGCCGACGGGCGGCCA 360 Query 16287 TGCGGGCCGCTCGAAGGCTGGCCGCGGGTATTGTCACTGTGCCCCCCAGGTCCAGGCGAC 16346 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TGCGGGCCGCTCGAAGGCTGGCCGCGGGTATTGTCACTGTGCCCCCCAGGTCCAGGCGAC 420 Query 16347 GAGCGNNNNNNNNNNNNNNNNNNNCCATTAGTGCTATGACTCAGGGTCGCAGGGGCAACG 16406 ||||| |||||||||||||||||||||||||||||||||||| Sbjct 421 GAGCGGCCGCCGCAGCAGCCGCGGCCATTAGTGCTATGACTCAGGGTCGCAGGGGCAACG 480 Query 16407 TGTATTGGGTGCGCGACTCGGTTAGCGGCCTGCGCGTGCCCGTGCGCACCCGCCCCCCGC 16466 |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 481 TGTACTGGGTGCGCGACTCGGAATTCGGCCTGCGCGTGCCCGTGCGCACCCGCCCCCCGC 540 Query 16467 GCAACTAGATTGCAAGAAAAAACTACTTAGACTCGTACTGTTGTATGTATCCAGCGGCGG 16526 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 GCAACTAGATTGCAAGAAAAAACTACTTAGACTCGTACTGTTGTATGTATCCAGCGGCGG 600 Query 16527 CGGCGCGCAACGAAGCTATGTCCAAGCGCAAAATCAAAGAAGAGATGCTCCAGGTCATCG 16586 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 CGGCGCGCAACGAAGCTATGTCCAAGCGCAAAATCAAAGAAGAGATGCTCCAGGTCATCG 660 Query 16587 CGCCGGAGATCTATGGCCCCCCGAAGAAGGAAGAGCAGGATTACAAGCCCCGAAAGCTAA 16646 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 CGCCGGAGATCTATGGCCCCCCGAAGAAGGAAGAGCAGGATTACAAGCCCCGAAAGCTAA 720 Query 16647 AGCGGGTCAAAAAGNNNNNNNNNNNNNNNNNNNNNNNNCTTGACGACGAGGTGGAACTGC 16706 |||||||||||||| |||||||||||||||||||||| Sbjct 721 AGCGGGTCAAAAAGAAAAAGAAAGATGATGATGATGAACTTGACGACGAGGTGGAACTGC 780 Query 16707 TGCACGCTACCGCGCCCAGGCGACGGGTACAGTGGAAAGGTCGACGCGTAAAACGTGTTT 16766 ||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||| Sbjct 781 TGCACGCAACCGCGCCCAGGCGGCGGGTACAGTGGAAAGGTCGACGCGTAAGACGTGTTT 840 Query 16767 TGCGACCCGGCACCACCGTAGTCTTTACGCCCGGTGAGCGCTCCACCCGCACCTACAAGC 16826 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 841 TGCGACCCGGCACCACCGTAGTTTTTACGCCCGGTGAGCGCTCCACCCGCACCTACAAGC 900 Query 16827 GCGTGTATGATGAGGTGTACGGCGACGAGGACCTGCTTGAGCAGGCCAACGAGCGCCTCG 16886 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 901 GCGTGTATGATGAGGTGTACGGCGACGAGGACCTGCTTGAGCAGGCCAACGAGCGCCTCG 960 Query 16887 GGGAGTTTGCCTACGGAAAGCGGCATAAGGACATGCTGGCGTTGCCGCTGGACGAGGG 16944 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 961 GGGAGTTTGCCTACGGAAAGCGGCATAAGGACATGTTGGCGTTGCCGCTGGACGAGGG 1018 Score = 728 bits (806), Expect = 0.0 Identities = 414/421 (98%), Gaps = 0/421 (0%) Strand=Plus/Plus Query 11517 GGTAACCGCATACGAGCAGACGGTGAACCAGGAGATTAACTTTCAAAAAAGCTTTAACAA 11576 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6672 GGTTACCGCGTACGAGCAGACGGTGAACCAGGAGATTAACTTTCAAAAAAGCTTTAACAA 6731 Query 11577 CCACGTGCGTACGCTTGTGGCGCGCGAGGAGGTGGCTATAGGACTGATGCATCTGTGGGA 11636 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6732 CCACGTGCGCACGCTTGTGGCGCGCGAGGAGGTGGCTATAGGACTGATGCATCTGTGGGA 6791 Query 11637 CTTTGTAAGCGCGCTGGAGCAAAACCCAAATAGCAAGCCGCTCATGGCGCAGCTGTTCCT 11696 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6792 CTTTGTAAGCGCGCTGGAGCAAAACCCAAATAGCAAGCCGCTCATGGCGCAGCTGTTCCT 6851 Query 11697 TATAGTGCAGCACAGCAGGGACAACGAGGCATTCAGGGATGCGCTGCTAAACATAGTAGA 11756 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6852 TATAGTGCAGCACAGCAGGGACAACGAGGCATTCAGGGATGCGCTGCTAAACATAGTAGA 6911 Query 11757 GCCCGAGGGCCGCTGGCTGCTCGATTTGATAAACATCCTGCAGAGCATAGTGGTGCAGGA 11816 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 6912 GCCCGAGGGCCGCTGGCTGCTCGATTTGATAAACATTCTGCAGAGCATAGTGGTGCAGGA 6971 Query 11817 GCGCAGCTTGAGCCTGGCTGACAAGGTGGCCGCCATCAACTATTCCATGCTTAGCCTGGG 11876 |||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| Sbjct 6972 GCGCAGCTTGAGCCTGGCTGACAAGGTGGCCGCCATTAACTATTCCATGCTCAGTCTGGG 7031 Query 11877 CAAGTTTTACGCCCGCAAGATATACCATACCCCTTACGTTCCCATAGACAAGGAGGTAAA 11936 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7032 CAAGTTTTACGCCCGCAAGATATACCATACCCCTTACGTTCCCATAGACAAGGAGGTAAA 7091 Query 11937 G 11937 | Sbjct 7092 G 7092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114874121662200