Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20
2012-03-01] 4,309 sequences; 273,786,188 total letters
Query= AC_000010.1
Length=35524
Score E
Sequences producing significant alignments: (Bits) Value
seq3063 262 9e-66
>seq3063
Length=7092
Score = 262 bits (290), Expect = 9e-66
Identities = 309/416 (74%), Gaps = 4/416 (1%)
Strand=Plus/Plus
Query 11334 GCCTACGAGCAGACCGTGAAGGAGGAGCGCAACTTTCAAAAATCTTTCAACAATCATGTG 11393
|| ||||||||||| ||||| ||||| |||||||||||| || ||||| || |||
Sbjct 6679 GCGTACGAGCAGACGGTGAACCAGGAGATTAACTTTCAAAAAAGCTTTAACAACCACGTG 6738
Query 11394 CGCACCCTGATTGCCCGCGAGGAGGTGACACTGGGTCTAATGCACCTGTGGGACCTGATG 11453
||||| || | || |||||||||||| | | || || ||||| ||||||||| | ||
Sbjct 6739 CGCACGCTTGTGGCGCGCGAGGAGGTGGCTATAGGACTGATGCATCTGTGGGACTT--TG 6796
Query 11454 GAAGCTA--TTACCCAGAACCCCACCAGCAAACCTCTGACCGCTCAGCTGTTTCTAGTGG 11511
|||| | || ||||| | ||||| || || | || |||||||| || | |
Sbjct 6797 TAAGCGCGCTGGAGCAAAACCCAAATAGCAAGCCGCTCATGGCGCAGCTGTTCCTTATAG 6856
Query 11512 TGCAACATAGCAGAGACAATGAGGCATTTAGGGAGGCGCTGTTGAACATCACTGAGCCCG 11571
|||| || ||||| ||||| |||||||| ||||| |||||| | ||||| |||||||
Sbjct 6857 TGCAGCACAGCAGGGACAACGAGGCATTCAGGGATGCGCTGCTAAACATAGTAGAGCCCG 6916
Query 11572 AGGGGAGATGGTTGTATGATCTTATCAATATTCTGCAAAGTATCATAGTGCAAGAACGTA 11631
|||| | ||| || ||| | || || |||||||| || || | ||||| || || |
Sbjct 6917 AGGGCCGCTGGCTGCTCGATTTGATAAACATTCTGCAGAGCATAGTGGTGCAGGAGCGCA 6976
Query 11632 GCCTGGGTCTGGCTGAGAAGGTGGCTGCTATTAACTACTCGGTCTTAAGCCTGGGCAAGC 11691
|| || | |||||||| |||||||| || |||||||| || | | || |||||||||
Sbjct 6977 GCTTGAGCCTGGCTGACAAGGTGGCCGCCATTAACTATTCCATGCTCAGTCTGGGCAAGT 7036
Query 11692 ACTACGCTCGCAAGATCTATAAAACCCCATACGTACCTATAGACAAGGAGGTTAAG 11747
||||| |||||||| || | ||||| ||||| || |||||||||||||| |||
Sbjct 7037 TTTACGCCCGCAAGATATACCATACCCCTTACGTTCCCATAGACAAGGAGGTAAAG 7092
Score = 138 bits (152), Expect = 3e-28
Identities = 373/580 (64%), Gaps = 47/580 (8%)
Strand=Plus/Plus
Query 16067 CAGGTCCCGCAGGCGCGCAGCCACTGCAGCAGCAGCGGCCATTGCCAACATGGCCCAACC 16126
||||||| | | || || ||| | |||||||| ||||||||| ||| | ||
Sbjct 407 CAGGTCCAGGCGACGAGCGGCCGCCGCAGCAGCCGCGGCCATTAGTGCTATGACTCAGGG 466
Query 16127 GCGAAGAGGCAATGTGTACTGGGTGCGCGACGCCACCACCGGCCAGCGCGTGCCCGTGCG 16186
|| || ||||| |||||||||||||||||| | ||||| |||||||||||||||
Sbjct 467 TCGCAGGGGCAACGTGTACTGGGTGCGCGACTCGGAATTCGGCCTGCGCGTGCCCGTGCG 526
Query 16187 CACCCGTCCCCCTCGCTCTTAGA-----AGA------TACTGAGCAGTCT--CCGATGT- 16232
|||||| ||||| ||| |||| ||| |||| || | || | | |||
Sbjct 527 CACCCGCCCCCCGCGCAACTAGATTGCAAGAAAAAACTACTTAG-ACTCGTACTGTTGTA 585
Query 16233 TGTGTCC---------------CAGCGAGG--ATGTCCAAGCGCAAATACAAGGAAGAGA 16275
||| ||| || ||| | ||||||||||||||| ||| |||||||
Sbjct 586 TGTATCCAGCGGCGGCGGCGCGCAACGAAGCTATGTCCAAGCGCAAAATCAAAGAAGAGA 645
Query 16276 TGCTCCAGGTCATCGCGCCTGAAATCTACGGTCCGCCGGTGAAGGATGaaaaa------a 16329
||||||||||||||||||| || ||||| || || ||| |||||| || | |
Sbjct 646 TGCTCCAGGTCATCGCGCCGGAGATCTATGGCCCCCCGAAGAAGGAAGAGCAGGATTACA 705
Query 16330 aGCCCCGCAAAATCAAGCGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTC 16389
||||||| || | ||||||||
Sbjct 706 AGCCCCGAAAGCTAAAGCGGGTCAAAAAGAAAAAGAAAGATGATGATGATGAACTTGACG 765
Query 16390 T---GGTGGAGTTTGTGCGCGAGTTCGCCCCAAGGCGGCGTGTGCAGTGGC---GTGGAC 16443
|||||| | ||| || ||| || |||||||| || |||||| || |||
Sbjct 766 ACGAGGTGGAACTGCTGCACGCAACCGCGCCCAGGCGGCGGGTACAGTGGAAAGGTCGAC 825
Query 16444 GCAAAGTGCGGCCTGTGCTGAGACCTGGAACCACGGTGGTCTTTACGCCCGGCGAGCGCT 16503
|| || | | ||| || |||| || ||||| || || ||||||||||| |||||||
Sbjct 826 GC---GTAAGACGTGTTTTGCGACCCGGCACCACCGTAGTTTTTACGCCCGGTGAGCGCT 882
Query 16504 CCAGCACTGCTTTTAAGCGGTCCTATGATGAGGTGTATGGGGATGATGATATTCTGGAGC 16563
||| | | | ||||| |||||||||||||| || || || || | || ||||
Sbjct 883 CCACCCGCACCTACAAGCGCGTGTATGATGAGGTGTACGGCGACGAGGACCTGCTTGAGC 942
Query 16564 AGGCGGCTGACCGCCTGGGCGAGTTTGCTTATGGCAAGCG 16603
|||| || ||||| || |||||||| || || |||||
Sbjct 943 AGGCCAACGAGCGCCTCGGGGAGTTTGCCTACGGAAAGCG 982
Score = 104 bits (114), Expect = 5e-18
Identities = 195/282 (69%), Gaps = 11/282 (4%)
Strand=Plus/Plus
Query 15681 CCAAGCAAGATGTACGGAGGTGCTCGCAAACGCTCTACACAGCACCCTGTGCGAGTGCGC 15740
||||||||||||| || || || || ||||| || ||||| ||||| ||||||
Sbjct 3 CCAAGCAAGATGTTTGGCGGGGCAAAGAAGCGCTCCGACCAACACCCAGTGCGCGTGCGC 62
Query 15741 GGACACTTCCGCGCTCCATGGGGCGCCCTCAAGGGCCGTATCCGCACT---AGAACCACC 15797
|| |||| |||||| || |||||||| | ||| || | ||||||| | ||||||
Sbjct 63 GGGCACTACCGCGCGCCCTGGGGCGCGCACAAACGCGG---CCGCACTGGGCGCACCACC 119
Query 15798 GTCGATGATGTGATCGACCAGGTGGTGGCCGATGCTCGTAATTATACTCCTACTGCACCT 15857
|||||||| | || ||| |||||||| || || || || || || || || | ||
Sbjct 120 GTCGATGACGCCATTGACGCGGTGGTGGAGGAGGCGCGCAACTACACGCCCACGCCGCCA 179
Query 15858 ACA---TCTACTGTGGATGCAGTTATTGACAGCGTAGT-AGCTGACGCCCGCGCCTATGC 15913
|| || || ||||| || | ||| | | ||| || || || ||||| |||||
Sbjct 180 CCAGTGTCCACAGTGGACGCGGCCATTCAGACCGTGGTGCGCGGA-GCCCGGCGTTATGC 238
Query 15914 TCGCCGGAAGAGCAGGCGGAGACGCATCGCCAGGCGCCACCG 15955
| |||||| ||||||| ||| | || | ||||||||
Sbjct 239 TAAAATGAAGAGACGGCGGAGGCGCGTAGCACGTCGCCACCG 280
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 113549389451388
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |