Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= AC_000010.1 Length=35524 Score E Sequences producing significant alignments: (Bits) Value seq3063 262 9e-66 >seq3063 Length=7092 Score = 262 bits (290), Expect = 9e-66 Identities = 309/416 (74%), Gaps = 4/416 (1%) Strand=Plus/Plus Query 11334 GCCTACGAGCAGACCGTGAAGGAGGAGCGCAACTTTCAAAAATCTTTCAACAATCATGTG 11393 || ||||||||||| ||||| ||||| |||||||||||| || ||||| || ||| Sbjct 6679 GCGTACGAGCAGACGGTGAACCAGGAGATTAACTTTCAAAAAAGCTTTAACAACCACGTG 6738 Query 11394 CGCACCCTGATTGCCCGCGAGGAGGTGACACTGGGTCTAATGCACCTGTGGGACCTGATG 11453 ||||| || | || |||||||||||| | | || || ||||| ||||||||| | || Sbjct 6739 CGCACGCTTGTGGCGCGCGAGGAGGTGGCTATAGGACTGATGCATCTGTGGGACTT--TG 6796 Query 11454 GAAGCTA--TTACCCAGAACCCCACCAGCAAACCTCTGACCGCTCAGCTGTTTCTAGTGG 11511 |||| | || ||||| | ||||| || || | || |||||||| || | | Sbjct 6797 TAAGCGCGCTGGAGCAAAACCCAAATAGCAAGCCGCTCATGGCGCAGCTGTTCCTTATAG 6856 Query 11512 TGCAACATAGCAGAGACAATGAGGCATTTAGGGAGGCGCTGTTGAACATCACTGAGCCCG 11571 |||| || ||||| ||||| |||||||| ||||| |||||| | ||||| ||||||| Sbjct 6857 TGCAGCACAGCAGGGACAACGAGGCATTCAGGGATGCGCTGCTAAACATAGTAGAGCCCG 6916 Query 11572 AGGGGAGATGGTTGTATGATCTTATCAATATTCTGCAAAGTATCATAGTGCAAGAACGTA 11631 |||| | ||| || ||| | || || |||||||| || || | ||||| || || | Sbjct 6917 AGGGCCGCTGGCTGCTCGATTTGATAAACATTCTGCAGAGCATAGTGGTGCAGGAGCGCA 6976 Query 11632 GCCTGGGTCTGGCTGAGAAGGTGGCTGCTATTAACTACTCGGTCTTAAGCCTGGGCAAGC 11691 || || | |||||||| |||||||| || |||||||| || | | || ||||||||| Sbjct 6977 GCTTGAGCCTGGCTGACAAGGTGGCCGCCATTAACTATTCCATGCTCAGTCTGGGCAAGT 7036 Query 11692 ACTACGCTCGCAAGATCTATAAAACCCCATACGTACCTATAGACAAGGAGGTTAAG 11747 ||||| |||||||| || | ||||| ||||| || |||||||||||||| ||| Sbjct 7037 TTTACGCCCGCAAGATATACCATACCCCTTACGTTCCCATAGACAAGGAGGTAAAG 7092 Score = 138 bits (152), Expect = 3e-28 Identities = 373/580 (64%), Gaps = 47/580 (8%) Strand=Plus/Plus Query 16067 CAGGTCCCGCAGGCGCGCAGCCACTGCAGCAGCAGCGGCCATTGCCAACATGGCCCAACC 16126 ||||||| | | || || ||| | |||||||| ||||||||| ||| | || Sbjct 407 CAGGTCCAGGCGACGAGCGGCCGCCGCAGCAGCCGCGGCCATTAGTGCTATGACTCAGGG 466 Query 16127 GCGAAGAGGCAATGTGTACTGGGTGCGCGACGCCACCACCGGCCAGCGCGTGCCCGTGCG 16186 || || ||||| |||||||||||||||||| | ||||| ||||||||||||||| Sbjct 467 TCGCAGGGGCAACGTGTACTGGGTGCGCGACTCGGAATTCGGCCTGCGCGTGCCCGTGCG 526 Query 16187 CACCCGTCCCCCTCGCTCTTAGA-----AGA------TACTGAGCAGTCT--CCGATGT- 16232 |||||| ||||| ||| |||| ||| |||| || | || | | ||| Sbjct 527 CACCCGCCCCCCGCGCAACTAGATTGCAAGAAAAAACTACTTAG-ACTCGTACTGTTGTA 585 Query 16233 TGTGTCC---------------CAGCGAGG--ATGTCCAAGCGCAAATACAAGGAAGAGA 16275 ||| ||| || ||| | ||||||||||||||| ||| ||||||| Sbjct 586 TGTATCCAGCGGCGGCGGCGCGCAACGAAGCTATGTCCAAGCGCAAAATCAAAGAAGAGA 645 Query 16276 TGCTCCAGGTCATCGCGCCTGAAATCTACGGTCCGCCGGTGAAGGATGaaaaa------a 16329 ||||||||||||||||||| || ||||| || || ||| |||||| || | | Sbjct 646 TGCTCCAGGTCATCGCGCCGGAGATCTATGGCCCCCCGAAGAAGGAAGAGCAGGATTACA 705 Query 16330 aGCCCCGCAAAATCAAGCGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTC 16389 ||||||| || | |||||||| Sbjct 706 AGCCCCGAAAGCTAAAGCGGGTCAAAAAGAAAAAGAAAGATGATGATGATGAACTTGACG 765 Query 16390 T---GGTGGAGTTTGTGCGCGAGTTCGCCCCAAGGCGGCGTGTGCAGTGGC---GTGGAC 16443 |||||| | ||| || ||| || |||||||| || |||||| || ||| Sbjct 766 ACGAGGTGGAACTGCTGCACGCAACCGCGCCCAGGCGGCGGGTACAGTGGAAAGGTCGAC 825 Query 16444 GCAAAGTGCGGCCTGTGCTGAGACCTGGAACCACGGTGGTCTTTACGCCCGGCGAGCGCT 16503 || || | | ||| || |||| || ||||| || || ||||||||||| ||||||| Sbjct 826 GC---GTAAGACGTGTTTTGCGACCCGGCACCACCGTAGTTTTTACGCCCGGTGAGCGCT 882 Query 16504 CCAGCACTGCTTTTAAGCGGTCCTATGATGAGGTGTATGGGGATGATGATATTCTGGAGC 16563 ||| | | | ||||| |||||||||||||| || || || || | || |||| Sbjct 883 CCACCCGCACCTACAAGCGCGTGTATGATGAGGTGTACGGCGACGAGGACCTGCTTGAGC 942 Query 16564 AGGCGGCTGACCGCCTGGGCGAGTTTGCTTATGGCAAGCG 16603 |||| || ||||| || |||||||| || || ||||| Sbjct 943 AGGCCAACGAGCGCCTCGGGGAGTTTGCCTACGGAAAGCG 982 Score = 104 bits (114), Expect = 5e-18 Identities = 195/282 (69%), Gaps = 11/282 (4%) Strand=Plus/Plus Query 15681 CCAAGCAAGATGTACGGAGGTGCTCGCAAACGCTCTACACAGCACCCTGTGCGAGTGCGC 15740 ||||||||||||| || || || || ||||| || ||||| ||||| |||||| Sbjct 3 CCAAGCAAGATGTTTGGCGGGGCAAAGAAGCGCTCCGACCAACACCCAGTGCGCGTGCGC 62 Query 15741 GGACACTTCCGCGCTCCATGGGGCGCCCTCAAGGGCCGTATCCGCACT---AGAACCACC 15797 || |||| |||||| || |||||||| | ||| || | ||||||| | |||||| Sbjct 63 GGGCACTACCGCGCGCCCTGGGGCGCGCACAAACGCGG---CCGCACTGGGCGCACCACC 119 Query 15798 GTCGATGATGTGATCGACCAGGTGGTGGCCGATGCTCGTAATTATACTCCTACTGCACCT 15857 |||||||| | || ||| |||||||| || || || || || || || || | || Sbjct 120 GTCGATGACGCCATTGACGCGGTGGTGGAGGAGGCGCGCAACTACACGCCCACGCCGCCA 179 Query 15858 ACA---TCTACTGTGGATGCAGTTATTGACAGCGTAGT-AGCTGACGCCCGCGCCTATGC 15913 || || || ||||| || | ||| | | ||| || || || ||||| ||||| Sbjct 180 CCAGTGTCCACAGTGGACGCGGCCATTCAGACCGTGGTGCGCGGA-GCCCGGCGTTATGC 238 Query 15914 TCGCCGGAAGAGCAGGCGGAGACGCATCGCCAGGCGCCACCG 15955 | |||||| ||||||| ||| | || | |||||||| Sbjct 239 TAAAATGAAGAGACGGCGGAGGCGCGTAGCACGTCGCCACCG 280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113549389451388