Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= AC_000011.1 Length=36519 Score E Sequences producing significant alignments: (Bits) Value seq3063 358 2e-94 >seq3063 Length=7092 Score = 358 bits (396), Expect = 2e-94 Identities = 332/421 (79%), Gaps = 0/421 (0%) Strand=Plus/Plus Query 11269 GGTCACGGCGTACGAGCAGACCGTGAAGGAGGAGAGCAACTTCCAAAAATCCTTCAACAA 11328 ||| || |||||||||||||| ||||| |||||| ||||| |||||| ||| ||||| Sbjct 6672 GGTTACCGCGTACGAGCAGACGGTGAACCAGGAGATTAACTTTCAAAAAAGCTTTAACAA 6731 Query 11329 CCACGTGCGCACCCTGATCGCGCGCGAGGAGGTGACCCTGGGCCTGATGCACCTGTGGGA 11388 |||||||||||| || | ||||||||||||||| | | || |||||||| |||||||| Sbjct 6732 CCACGTGCGCACGCTTGTGGCGCGCGAGGAGGTGGCTATAGGACTGATGCATCTGTGGGA 6791 Query 11389 CCTGCTGGAGGCCATCGTGCAGAACCCCACCAGCAAGCCGCTGACGGCGCAGCTGTTCCT 11448 | | | || | | ||| ||||| | ||||||||||| | ||||||||||||||| Sbjct 6792 CTTTGTAAGCGCGCTGGAGCAAAACCCAAATAGCAAGCCGCTCATGGCGCAGCTGTTCCT 6851 Query 11449 GGTGGTGCAGCATAGTCGGGACAACGAAGCGTTCAGGGAGGCGCTGCTGAATATCACCGA 11508 | |||||||| || |||||||||| || |||||||| |||||||| || || || Sbjct 6852 TATAGTGCAGCACAGCAGGGACAACGAGGCATTCAGGGATGCGCTGCTAAACATAGTAGA 6911 Query 11509 GCCCGAGGGCCGCTGGCTCCTGGACCTGGTGAACATTCTGCAGAGCATCGTGGTGCAGGA 11568 |||||||||||||||||| || || || | ||||||||||||||||| ||||||||||| Sbjct 6912 GCCCGAGGGCCGCTGGCTGCTCGATTTGATAAACATTCTGCAGAGCATAGTGGTGCAGGA 6971 Query 11569 GCGCGGGCTGCCGCTGTCCGAGAAGCTGGCGGCCATCAACTTCTCGGTGCTGAGTTTGGG 11628 |||| | || ||| | || ||| |||| ||||| |||| || |||| ||| |||| Sbjct 6972 GCGCAGCTTGAGCCTGGCTGACAAGGTGGCCGCCATTAACTATTCCATGCTCAGTCTGGG 7031 Query 11629 CAAGTACTACGCTAGGAAGATCTACAAGACCCCGTACGTGCCCATAGACAAGGAGGTGAA 11688 ||||| ||||| | ||||| ||| | ||||| ||||| ||||||||||||||||| || Sbjct 7032 CAAGTTTTACGCCCGCAAGATATACCATACCCCTTACGTTCCCATAGACAAGGAGGTAAA 7091 Query 11689 G 11689 | Sbjct 7092 G 7092 Score = 232 bits (256), Expect = 2e-56 Identities = 362/512 (71%), Gaps = 34/512 (7%) Strand=Plus/Plus Query 15996 GGGAACGTGTACTGGGTGCGCGACGCCGCCACCGGTGTGCGCGTGCCCGTGCGCACCCGC 16055 || ||||||||||||||||||||| | | ||| ||||||||||||||||||||||| Sbjct 474 GGCAACGTGTACTGGGTGCGCGACTCGGAATTCGGCCTGCGCGTGCCCGTGCGCACCCGC 533 Query 16056 CCCCCTCGCAC-----TTG-AAGATGTTC--ACTTCG---CGA--TGTTG-ATGTGTCC- 16100 ||||| |||| ||| |||| |||| | || ||||| |||| ||| Sbjct 534 CCCCCGCGCAACTAGATTGCAAGAAAAAACTACTTAGACTCGTACTGTTGTATGTATCCA 593 Query 16101 ----CAGCGGCGAG----GAGG--ATGTCCAAGCGCAAATTCAAGGAAGAGATGCTCCAG 16150 | |||||| | || | ||||||||||||||| |||| ||||||||||||||| Sbjct 594 GCGGCGGCGGCGCGCAACGAAGCTATGTCCAAGCGCAAAATCAAAGAAGAGATGCTCCAG 653 Query 16151 GTCATCGCGCCTGAGATCTACGGCCCTGCGGTGGTGAAGGAGGA--AAGA----AAGCCC 16204 ||||||||||| |||||||| ||||| || | ||||| || | || |||||| Sbjct 654 GTCATCGCGCCGGAGATCTATGGCCCCCCGAAG---AAGGAAGAGCAGGATTACAAGCCC 710 Query 16205 CGCAAAATCAAGCGGGTCAAAAAGGANNNNNNNNAAGAAGAAAGTGATGTGGACGGATTG 16264 || || | ||||||||||||||| | | || || ||| | |||| | Sbjct 711 CGAAAGCTAAAGCGGGTCAAAAAGAAAAAGAAAGATGATGATGATGAACTTGACGACGAG 770 Query 16265 GTGGAGTTTGTGCGCGAGTTCGCCCCCCGGCGGCGCGTGCAGTGGCGCGGGCGGAAGGTG 16324 ||||| | ||| || ||| ||| ||||||| || |||||| || || || Sbjct 771 GTGGAACTGCTGCACGCAACCGCGCCCAGGCGGCGGGTACAGTGGAAAGGTCGACGCGTA 830 Query 16325 CAACCGGTGCTGAGACCCGGCACCACCGTGGTCTTCACGCCCGGCGAGCGCTCCGGCACC 16384 || || || |||||||||||||||| || || |||||||| ||||||||| | | Sbjct 831 AGACGTGTTTTGCGACCCGGCACCACCGTAGTTTTTACGCCCGGTGAGCGCTCCACCCGC 890 Query 16385 GCTTCCAAGCGCTCCTACGACGAGGTGTACGGGGATGATGATATTCTGGAGCAGGCGGCC 16444 | | ||||||| || || ||||||||||| || || || | || |||||||| | Sbjct 891 ACCTACAAGCGCGTGTATGATGAGGTGTACGGCGACGAGGACCTGCTTGAGCAGGCCAAC 950 Query 16445 GAGCGCCTGGGCGAGTTTGCTTACGGCAAGCG 16476 |||||||| || |||||||| ||||| ||||| Sbjct 951 GAGCGCCTCGGGGAGTTTGCCTACGGAAAGCG 982 Score = 129 bits (142), Expect = 1e-25 Identities = 137/177 (77%), Gaps = 4/177 (2%) Strand=Plus/Plus Query 15540 CCCAGCAAGATGTACGGAGGCGCTCGCCAACGCTCCACGCAACACCCCGTGCGCGTGCGC 15599 || |||||||||| || || || | |||||| |||||||| |||||||||||| Sbjct 3 CCAAGCAAGATGTTTGGCGGGGCAAAGAAGCGCTCCGACCAACACCCAGTGCGCGTGCGC 62 Query 15600 GGGCACTTCCGCGCTCCCTGGGGCGCCCTCAAGGGCCG-CGTGCGGTCGCGCACCACCGT 15658 ||||||| |||||| ||||||||||| | ||| || | || | | |||||||||||| Sbjct 63 GGGCACTACCGCGCGCCCTGGGGCGCGCACAAACGCGGCCGCACTG-GGCGCACCACCGT 121 Query 15659 CGACGACGTGATCGACCAGGTGGTGGCCGACGCGCGCAACTACA--CCCCCGCCGCC 15713 ||| |||| || ||| |||||||| || ||||||||||||| ||| ||||||| Sbjct 122 CGATGACGCCATTGACGCGGTGGTGGAGGAGGCGCGCAACTACACGCCCACGCCGCC 178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116733226528098