Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20
2012-03-01] 4,309 sequences; 273,786,188 total letters
Query= AC_000011.1
Length=36519
Score E
Sequences producing significant alignments: (Bits) Value
seq3063 358 2e-94
>seq3063
Length=7092
Score = 358 bits (396), Expect = 2e-94
Identities = 332/421 (79%), Gaps = 0/421 (0%)
Strand=Plus/Plus
Query 11269 GGTCACGGCGTACGAGCAGACCGTGAAGGAGGAGAGCAACTTCCAAAAATCCTTCAACAA 11328
||| || |||||||||||||| ||||| |||||| ||||| |||||| ||| |||||
Sbjct 6672 GGTTACCGCGTACGAGCAGACGGTGAACCAGGAGATTAACTTTCAAAAAAGCTTTAACAA 6731
Query 11329 CCACGTGCGCACCCTGATCGCGCGCGAGGAGGTGACCCTGGGCCTGATGCACCTGTGGGA 11388
|||||||||||| || | ||||||||||||||| | | || |||||||| ||||||||
Sbjct 6732 CCACGTGCGCACGCTTGTGGCGCGCGAGGAGGTGGCTATAGGACTGATGCATCTGTGGGA 6791
Query 11389 CCTGCTGGAGGCCATCGTGCAGAACCCCACCAGCAAGCCGCTGACGGCGCAGCTGTTCCT 11448
| | | || | | ||| ||||| | ||||||||||| | |||||||||||||||
Sbjct 6792 CTTTGTAAGCGCGCTGGAGCAAAACCCAAATAGCAAGCCGCTCATGGCGCAGCTGTTCCT 6851
Query 11449 GGTGGTGCAGCATAGTCGGGACAACGAAGCGTTCAGGGAGGCGCTGCTGAATATCACCGA 11508
| |||||||| || |||||||||| || |||||||| |||||||| || || ||
Sbjct 6852 TATAGTGCAGCACAGCAGGGACAACGAGGCATTCAGGGATGCGCTGCTAAACATAGTAGA 6911
Query 11509 GCCCGAGGGCCGCTGGCTCCTGGACCTGGTGAACATTCTGCAGAGCATCGTGGTGCAGGA 11568
|||||||||||||||||| || || || | ||||||||||||||||| |||||||||||
Sbjct 6912 GCCCGAGGGCCGCTGGCTGCTCGATTTGATAAACATTCTGCAGAGCATAGTGGTGCAGGA 6971
Query 11569 GCGCGGGCTGCCGCTGTCCGAGAAGCTGGCGGCCATCAACTTCTCGGTGCTGAGTTTGGG 11628
|||| | || ||| | || ||| |||| ||||| |||| || |||| ||| ||||
Sbjct 6972 GCGCAGCTTGAGCCTGGCTGACAAGGTGGCCGCCATTAACTATTCCATGCTCAGTCTGGG 7031
Query 11629 CAAGTACTACGCTAGGAAGATCTACAAGACCCCGTACGTGCCCATAGACAAGGAGGTGAA 11688
||||| ||||| | ||||| ||| | ||||| ||||| ||||||||||||||||| ||
Sbjct 7032 CAAGTTTTACGCCCGCAAGATATACCATACCCCTTACGTTCCCATAGACAAGGAGGTAAA 7091
Query 11689 G 11689
|
Sbjct 7092 G 7092
Score = 232 bits (256), Expect = 2e-56
Identities = 362/512 (71%), Gaps = 34/512 (7%)
Strand=Plus/Plus
Query 15996 GGGAACGTGTACTGGGTGCGCGACGCCGCCACCGGTGTGCGCGTGCCCGTGCGCACCCGC 16055
|| ||||||||||||||||||||| | | ||| |||||||||||||||||||||||
Sbjct 474 GGCAACGTGTACTGGGTGCGCGACTCGGAATTCGGCCTGCGCGTGCCCGTGCGCACCCGC 533
Query 16056 CCCCCTCGCAC-----TTG-AAGATGTTC--ACTTCG---CGA--TGTTG-ATGTGTCC- 16100
||||| |||| ||| |||| |||| | || ||||| |||| |||
Sbjct 534 CCCCCGCGCAACTAGATTGCAAGAAAAAACTACTTAGACTCGTACTGTTGTATGTATCCA 593
Query 16101 ----CAGCGGCGAG----GAGG--ATGTCCAAGCGCAAATTCAAGGAAGAGATGCTCCAG 16150
| |||||| | || | ||||||||||||||| |||| |||||||||||||||
Sbjct 594 GCGGCGGCGGCGCGCAACGAAGCTATGTCCAAGCGCAAAATCAAAGAAGAGATGCTCCAG 653
Query 16151 GTCATCGCGCCTGAGATCTACGGCCCTGCGGTGGTGAAGGAGGA--AAGA----AAGCCC 16204
||||||||||| |||||||| ||||| || | ||||| || | || ||||||
Sbjct 654 GTCATCGCGCCGGAGATCTATGGCCCCCCGAAG---AAGGAAGAGCAGGATTACAAGCCC 710
Query 16205 CGCAAAATCAAGCGGGTCAAAAAGGANNNNNNNNAAGAAGAAAGTGATGTGGACGGATTG 16264
|| || | ||||||||||||||| | | || || ||| | |||| |
Sbjct 711 CGAAAGCTAAAGCGGGTCAAAAAGAAAAAGAAAGATGATGATGATGAACTTGACGACGAG 770
Query 16265 GTGGAGTTTGTGCGCGAGTTCGCCCCCCGGCGGCGCGTGCAGTGGCGCGGGCGGAAGGTG 16324
||||| | ||| || ||| ||| ||||||| || |||||| || || ||
Sbjct 771 GTGGAACTGCTGCACGCAACCGCGCCCAGGCGGCGGGTACAGTGGAAAGGTCGACGCGTA 830
Query 16325 CAACCGGTGCTGAGACCCGGCACCACCGTGGTCTTCACGCCCGGCGAGCGCTCCGGCACC 16384
|| || || |||||||||||||||| || || |||||||| ||||||||| | |
Sbjct 831 AGACGTGTTTTGCGACCCGGCACCACCGTAGTTTTTACGCCCGGTGAGCGCTCCACCCGC 890
Query 16385 GCTTCCAAGCGCTCCTACGACGAGGTGTACGGGGATGATGATATTCTGGAGCAGGCGGCC 16444
| | ||||||| || || ||||||||||| || || || | || |||||||| |
Sbjct 891 ACCTACAAGCGCGTGTATGATGAGGTGTACGGCGACGAGGACCTGCTTGAGCAGGCCAAC 950
Query 16445 GAGCGCCTGGGCGAGTTTGCTTACGGCAAGCG 16476
|||||||| || |||||||| ||||| |||||
Sbjct 951 GAGCGCCTCGGGGAGTTTGCCTACGGAAAGCG 982
Score = 129 bits (142), Expect = 1e-25
Identities = 137/177 (77%), Gaps = 4/177 (2%)
Strand=Plus/Plus
Query 15540 CCCAGCAAGATGTACGGAGGCGCTCGCCAACGCTCCACGCAACACCCCGTGCGCGTGCGC 15599
|| |||||||||| || || || | |||||| |||||||| ||||||||||||
Sbjct 3 CCAAGCAAGATGTTTGGCGGGGCAAAGAAGCGCTCCGACCAACACCCAGTGCGCGTGCGC 62
Query 15600 GGGCACTTCCGCGCTCCCTGGGGCGCCCTCAAGGGCCG-CGTGCGGTCGCGCACCACCGT 15658
||||||| |||||| ||||||||||| | ||| || | || | | ||||||||||||
Sbjct 63 GGGCACTACCGCGCGCCCTGGGGCGCGCACAAACGCGGCCGCACTG-GGCGCACCACCGT 121
Query 15659 CGACGACGTGATCGACCAGGTGGTGGCCGACGCGCGCAACTACA--CCCCCGCCGCC 15713
||| |||| || ||| |||||||| || ||||||||||||| ||| |||||||
Sbjct 122 CGATGACGCCATTGACGCGGTGGTGGAGGAGGCGCGCAACTACACGCCCACGCCGCC 178
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 116733226528098
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