Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= AC_000018.1 Length=35514 Score E Sequences producing significant alignments: (Bits) Value seq3063 279 1e-70 >seq3063 Length=7092 Score = 279 bits (308), Expect = 1e-70 Identities = 310/414 (75%), Gaps = 0/414 (0%) Strand=Plus/Plus Query 11546 GCCTACGAGCAGACCGTGAAGGAGGAGCGCAACTTCCAAAAATCTTTTAACAACCATGTG 11605 || ||||||||||| ||||| ||||| ||||| |||||| ||||||||||| ||| Sbjct 6679 GCGTACGAGCAGACGGTGAACCAGGAGATTAACTTTCAAAAAAGCTTTAACAACCACGTG 6738 Query 11606 CGCACCCTGATCGCCCGCGAGGAAGTGACCCTGGGTCTGATGCATCTGTGGGACCTGATG 11665 ||||| || | || |||||||| ||| | | || |||||||||||||||||| | | Sbjct 6739 CGCACGCTTGTGGCGCGCGAGGAGGTGGCTATAGGACTGATGCATCTGTGGGACTTTGTA 6798 Query 11666 GAGGCTATCACCCAGAACCCCACTAGCAAACCACTGACAGCTCAGCTGTTTCTGGTGGTT 11725 || | || ||||| | |||||| || || | || |||||||| || | || Sbjct 6799 AGCGCGCTGGAGCAAAACCCAAATAGCAAGCCGCTCATGGCGCAGCTGTTCCTTATAGTG 6858 Query 11726 CAACATAGCAGGGACAACGAGGCATTCAGGGAGGCGTTGTTGAACATCACCGAGCCTGAT 11785 || || |||||||||||||||||||||||||| ||| || | ||||| ||||| || Sbjct 6859 CAGCACAGCAGGGACAACGAGGCATTCAGGGATGCGCTGCTAAACATAGTAGAGCCCGAG 6918 Query 11786 GGGAGATGGCTGTATGATCTGATCAACATCCTGCAAAGTATTATAGTGCAGGAACGTAGC 11845 || | |||||| ||| |||| ||||| ||||| || || | |||||||| || ||| Sbjct 6919 GGCCGCTGGCTGCTCGATTTGATAAACATTCTGCAGAGCATAGTGGTGCAGGAGCGCAGC 6978 Query 11846 CTGGGTTTGGCTGAGAAAGTGGCAGCTATCAACTACTCGGTCTTGAGCCTGGGCAAATAC 11905 || | ||||||| || ||||| || || ||||| || | | || |||||||| | Sbjct 6979 TTGAGCCTGGCTGACAAGGTGGCCGCCATTAACTATTCCATGCTCAGTCTGGGCAAGTTT 7038 Query 11906 TACGCTCGCAAGATCTACAAGACCCCCTACGTACCCATAGATAAGGAGGTAAAG 11959 ||||| |||||||| ||| | ||||| ||||| |||||||| |||||||||||| Sbjct 7039 TACGCCCGCAAGATATACCATACCCCTTACGTTCCCATAGACAAGGAGGTAAAG 7092 Score = 172 bits (190), Expect = 1e-38 Identities = 633/992 (64%), Gaps = 88/992 (9%) Strand=Plus/Plus Query 15853 CAAGATGTATGGAGGCGCCCGCAAACGCTCTACCCAGCACCCTGTGCGCGTTCGCGGTCA 15912 |||||||| ||| || || || ||||| ||| ||||| |||||||| ||||| || Sbjct 8 CAAGATGTTTGGCGGGGCAAAGAAGCGCTCCGACCAACACCCAGTGCGCGTGCGCGGGCA 67 Query 15913 TTTCCGCGCTCCCTGGGGCGCACTCAAGGGTCGTACCCGCACTCGG---ACCACGGTCGA 15969 | |||||| ||||||||||| | ||| | | ||||||| || ||||| ||||| Sbjct 68 CTACCGCGCGCCCTGGGGCGCGCACAAACGCGG---CCGCACTGGGCGCACCACCGTCGA 124 Query 15970 TGATGTGATCGACCAGGTGGTCGCCGATGCTCGTAATTATACTCCTACTGCGCCTACA-- 16027 ||| | || ||| |||||| | || || || || || || || || |||| || Sbjct 125 TGACGCCATTGACGCGGTGGTGGAGGAGGCGCGCAACTACACGCCCACGCCGCCACCAGT 184 Query 16028 -TCTACTGTGGATGCAGTTATTGACAGTGTGGTG-GCAGACGCCCGCGCCTATGCTCGCC 16085 || || ||||| || | ||| | | |||||| || || || ||| |||||| Sbjct 185 GTCCACAGTGGACGCGGCCATTCAGACCGTGGTGCGCGGAGCCCGGCGT-TATGCTAAAA 243 Query 16086 GGAAGAGCCGAAGGAGGCGCATCGCCAGGCGCCACAG----------GGCTACTCCCGCC 16135 |||||| || |||||||| | || | |||||| | ||| ||| ||||| Sbjct 244 TGAAGAGACGGCGGAGGCGCGTAGCACGTCGCCACCGCCGCCGACCCGGC-ACTGCCGCC 302 Query 16136 ATGCGAGCTGCAAAAGCTATTCT-----GCGGAGGGCCAAACGTGTG--GGGCGAAGAGC 16188 || || || || | || ||| | | | | || | ||||| || Sbjct 303 CAACGCGCGGCGGCGGCCCTGCTTAACCGCGCACGTCGCACCGGCCGACGGGCG----GC 358 Query 16189 CATGCTTAGAGCGGCCAGACG------CGCGGCT----TCAG-GTGCCAGCAGCGGCAGG 16237 ||||| | || || || | ||||| | ||| ||||| | |||| Sbjct 359 CATGC---GGGCCGCTCGAAGGCTGGCCGCGGGTATTGTCACTGTGCCCCC-----CAGG 410 Query 16238 TCCCGCAGGCGCGCGGCCACGGCGGCAGCAGCGGCCATTGCCAACATGGCCCAACCGCGA 16297 ||| | | || |||||| | || ||||| ||||||||| ||| | || || Sbjct 411 TCCAGGCGACGAGCGGCCGCCGCAGCAGCCGCGGCCATTAGTGCTATGACTCAGGGTCGC 470 Query 16298 AGAGGCAATGTGTACTGGGTGCGTGATGCCACTACCGGCCAGCGCGTGCCCGTGCGCACT 16357 || ||||| |||||||||||||| || | ||||| |||||||||||||||||| Sbjct 471 AGGGGCAACGTGTACTGGGTGCGCGACTCGGAATTCGGCCTGCGCGTGCCCGTGCGCACC 530 Query 16358 CGCCCCCCTCGCACTTAGA--------AGATACTGAGCAGTCTCCGA-TGTTGTGTC--- 16405 |||||||| |||| |||| | | ||| || ||| | |||||| | Sbjct 531 CGCCCCCCGCGCAACTAGATTGCAAGAAAAAACTACTTAGACTCGTACTGTTGTATGTAT 590 Query 16406 CCAGCGGC--------------AAG-TATGTCCAAGCGCAAATACAAGGAAGAGATGCTC 16450 |||||||| ||| |||||||||||||||| ||| |||||||||||| Sbjct 591 CCAGCGGCGGCGGCGCGCAACGAAGCTATGTCCAAGCGCAAAATCAAAGAAGAGATGCTC 650 Query 16451 CAGGTCATCGCGCCTGAAATCTACGGTCCACCGGTGAAGG------ATGaaaaaaaGCCC 16504 |||||||||||||| || ||||| || || ||| ||||| | || | |||||| Sbjct 651 CAGGTCATCGCGCCGGAGATCTATGGCCCCCCGAAGAAGGAAGAGCAGGATTACAAGCCC 710 Query 16505 CGCAAAATCAAGCGGGTCAAAA--ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGC-TG 16561 || || | ||||||||||||| | | | | Sbjct 711 CGAAAGCTAAAGCGGGTCAAAAAGAAAAAGAAAGATGATGATGATGAACTTGACGACGAG 770 Query 16562 GTGGAGTTTGTGCGCGAGTTCGCCCCAAGACGGCGCGTGCAGTGGCGCGGGCGCAAAGTG 16621 ||||| | ||| || ||| || || ||||| || |||||| || || || Sbjct 771 GTGGAACTGCTGCACGCAACCGCGCCCAGGCGGCGGGTACAGTGGAAAGGTCGACGCGTA 830 Query 16622 CGTCAAGTGCTCAGACCCGGGACCACTGTGGTTTTTACACCCGGCGAGCGTTCCAGCACT 16681 | | || | ||||||| ||||| || |||||||| ||||| ||||| |||| | Sbjct 831 AGACGTGTTTTGCGACCCGGCACCACCGTAGTTTTTACGCCCGGTGAGCGCTCCACCCGC 890 Query 16682 ACTTTTAAACGGTCCTATGATGAGGTGTACGGGGATGACAATATTCTTGAGCAGGCGGCA 16741 || | || || ||||||||||||||||| || || | | ||||||||||| Sbjct 891 ACCTACAAGCGCGTGTATGATGAGGTGTACGGCGACGAGGACCTGCTTGAGCAGGCCAAC 950 Query 16742 GACCGCCTTGACGAGTTTGCTTATGGCAAGCG 16773 || ||||| | |||||||| || || ||||| Sbjct 951 GAGCGCCTCGGGGAGTTTGCCTACGGAAAGCG 982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113517391088808