Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= AC_000019.1 Length=34794 Score E Sequences producing significant alignments: (Bits) Value seq3063 241 3e-59 >seq3063 Length=7092 Score = 241 bits (266), Expect = 3e-59 Identities = 304/416 (73%), Gaps = 4/416 (1%) Strand=Plus/Plus Query 11085 GCTTACGAGCAGACAGTAAAGGAAGAGCGTAACTTCCAAAAGTCTTTTAATAATCATGTG 11144 || ||||||||||| || || | ||| |||||| ||||| ||||| || || ||| Sbjct 6679 GCGTACGAGCAGACGGTGAACCAGGAGATTAACTTTCAAAAAAGCTTTAACAACCACGTG 6738 Query 11145 CGAACCCTGATTGCCCGCGAAGAAGTTACCCTTGGTTTGATGCATTTGTGGGATTTGATG 11204 || || || | || ||||| || || | | || |||||||| ||||||| || || Sbjct 6739 CGCACGCTTGTGGCGCGCGAGGAGGTGGCTATAGGACTGATGCATCTGTGGGACTT--TG 6796 Query 11205 GAAGCTATCATT--CAGAACCCTACTAGCAAACCTCTGACCGCCCAGCTGTTTCTGGTGG 11262 |||| | || ||||| | |||||| || || | || |||||||| || | | Sbjct 6797 TAAGCGCGCTGGAGCAAAACCCAAATAGCAAGCCGCTCATGGCGCAGCTGTTCCTTATAG 6856 Query 11263 TGCAACACAGCAGAGACAATGAGGCTTTCAGAGAGGCGCTGCTGAACATCACCGAACCCG 11322 |||| |||||||| ||||| ||||| ||||| || |||||||| ||||| || |||| Sbjct 6857 TGCAGCACAGCAGGGACAACGAGGCATTCAGGGATGCGCTGCTAAACATAGTAGAGCCCG 6916 Query 11323 AGGGGAGATGGTTGTATGATCTTATCAACATTCTACAGAGTATCATAGTGCAGGAGCGGA 11382 |||| | ||| || ||| | || |||||||| ||||| || | ||||||||||| | Sbjct 6917 AGGGCCGCTGGCTGCTCGATTTGATAAACATTCTGCAGAGCATAGTGGTGCAGGAGCGCA 6976 Query 11383 GCCTGGGCCTGGCCGAGAAGGTAGCTGCCATCAATTACTCGGTTTTGAGCTTGGGAAAAT 11442 || || ||||||| || ||||| || ||||| || || || | | || |||| || | Sbjct 6977 GCTTGAGCCTGGCTGACAAGGTGGCCGCCATTAACTATTCCATGCTCAGTCTGGGCAAGT 7036 Query 11443 ATTACGCTCGCAAAATCTACAAGACTCCATACGTTCCCATAGACAAGGAGGTGAAG 11498 |||||| ||||| || ||| | || || ||||||||||||||||||||||| ||| Sbjct 7037 TTTACGCCCGCAAGATATACCATACCCCTTACGTTCCCATAGACAAGGAGGTAAAG 7092 Score = 161 bits (178), Expect = 2e-35 Identities = 633/987 (64%), Gaps = 65/987 (7%) Strand=Plus/Plus Query 15436 CCAAGCAAGATGTACGGAGGCGCACGCAAACGTTCTACCCAACATCCCGTGCGTGTTCGC 15495 ||||||||||||| || || ||| || || || |||||| || ||||| || ||| Sbjct 3 CCAAGCAAGATGTTTGGCGGGGCAAAGAAGCGCTCCGACCAACACCCAGTGCGCGTGCGC 62 Query 15496 GGACATTTTCGCGCTCCATGGGGTGCCCTCAA---GGGCCGCACTCGCGTTCGAACCACC 15552 || || | ||||| || ||||| || | ||| ||||||||| | || |||||| Sbjct 63 GGGCACTACCGCGCGCCCTGGGGCGCGCACAAACGCGGCCGCACT---GGGCGCACCACC 119 Query 15553 GTCGATGATGTAATCGATCAGGTGGTTGCCGACGCCCGTAATTATACTCCTACTGCGCCT 15612 |||||||| | || || |||||| | || || || || || || || || |||| Sbjct 120 GTCGATGACGCCATTGACGCGGTGGTGGAGGAGGCGCGCAACTACACGCCCACGCCGCCA 179 Query 15613 ACA---TCTACTGTGGATGCAGTTATTGACAGTGTAGTG-GCTGACGCTCGCAACTATGC 15668 || || || ||||| || | ||| | | || ||| || || || || ||||| Sbjct 180 CCAGTGTCCACAGTGGACGCGGCCATTCAGACCGTGGTGCGCGGA-GCCCGGCGTTATGC 238 Query 15669 TCGACGTAAGAGCCGGCGAAGGCGCATTGCCAGACGCCA------CCGAGCTACCACT-- 15720 | | ||||| ||||| |||||| | || | ||||| |||| | |||| Sbjct 239 TAAAATGAAGAGACGGCGGAGGCGCGTAGCACGTCGCCACCGCCGCCGACCCGGCACTGC 298 Query 15721 -GCCATGCGAGCCGCAAGAGCTCTGCTACGAAGAGCTAGACGCGTGGGGCGAAG---AGC 15776 ||| || || || || ||||| | || | ||| || ||| | || Sbjct 299 CGCCCAACGCGCGGCGGCGGCCCTGCTTAACCGCGCACGTCGCACCGGCCGACGGGCGGC 358 Query 15777 CATGCTTAGGGCGGCCAGACGTGCAGCTTCGGG---CGCCAGCG---CCGGCAGGTCCCG 15830 ||||| |||| || || | || |||| | || | || ||||||| | Sbjct 359 CATGC---GGGCCGCTCGAAGGCTGGCCGCGGGTATTGTCACTGTGCCCCCCAGGTCCAG 415 Query 15831 CAGGCAAGCAGCCGCTGTCGCAGCGGCGACTATTGCCGACATGGCCCAATCGCGAAGAGG 15890 | | ||| ||||| | ||||| ||| | ||| | ||| | || || || || Sbjct 416 GCGACGAGCGGCCGCCGCAGCAGCCGCGGCCATTAGTGCTATGACTCAGGGTCGCAGGGG 475 Query 15891 CAATGTATACTGGGTGCGTGACGCTGCCACCGGTCAACGTGTACCCGTGCGCACCCGTCC 15950 ||| || ||||||||||| ||| | | ||| | || || |||||||||||||| || Sbjct 476 CAACGTGTACTGGGTGCGCGACTCGGAATTCGGCCTGCGCGTGCCCGTGCGCACCCGCCC 535 Query 15951 CCCTCGC-ACT-------TAGAAGATACTGAGCAGTCTCCGA-TGTTGTGT---CCCAGC 15998 ||| ||| ||| |||| | ||| || ||| | |||||| | ||||| Sbjct 536 CCCGCGCAACTAGATTGCAAGAAAAAACTACTTAGACTCGTACTGTTGTATGTATCCAGC 595 Query 15999 GGCG--------------AG-GATGTCCAAGCGCAAATACAAGGAAGAAATGCTGCAGGT 16043 |||| || ||||||||||||||| ||| ||||| ||||| ||||| Sbjct 596 GGCGGCGGCGCGCAACGAAGCTATGTCCAAGCGCAAAATCAAAGAAGAGATGCTCCAGGT 655 Query 16044 TATCGCACCTGAAGTCTACGGCCAACCGTTGAAGG------ATGaaaaaaaaccccgcaa 16097 ||||| || || |||| |||| ||| ||||| | || | || ||||| || Sbjct 656 CATCGCGCCGGAGATCTATGGCCCCCCGAAGAAGGAAGAGCAGGATTACAAGCCCCGAAA 715 Query 16098 aatcaagcgggttaaaaaggacaaaaaaGAAGAGGAAGATGGCGATGATGGGCTGGCGGA 16157 | |||||||| |||||| | || ||||| || || |||| ||| | || ||| Sbjct 716 GCTAAAGCGGGTCAAAAAGAAAAAGAAAGATGATGATGATGAACTTGACGACGAGGTGGA 775 Query 16158 GTTTGTGCGCGAGTTTGCCCCACGGCGACGCGTGCAATGGCGTGGGCGCAAAGTTCGACA 16217 | ||| || || || |||| || || || ||| || || || ||| Sbjct 776 ACTGCTGCACGCAACCGCGCCCAGGCGGCGGGTACAGTGGAAAGGTCGACGCGTAAGACG 835 Query 16218 TGTGTTGAGACCTGGAACTTCGGTGGTCTTTACACCCGGCGAGCGTTCAAGCGCTACTTT 16277 ||| ||| |||| || || | || || ||||| ||||| ||||| || | | || | Sbjct 836 TGTTTTGCGACCCGGCACCACCGTAGTTTTTACGCCCGGTGAGCGCTCCACCCGCACCTA 895 Query 16278 TAAGCGTTCCTATGATGAGGTGTACGGGGATGATGATATTCTTGAGCAGGCGGCTGACCG 16337 ||||| ||||||||||||||||| || || || | ||||||||||| || || Sbjct 896 CAAGCGCGTGTATGATGAGGTGTACGGCGACGAGGACCTGCTTGAGCAGGCCAACGAGCG 955 Query 16338 ATTAGGCGAGTTTGCTTATGGCAAGCG 16364 | || |||||||| || || ||||| Sbjct 956 CCTCGGGGAGTTTGCCTACGGAAAGCG 982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 111213508983048