Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_001454.1 Length=34214 Score E Sequences producing significant alignments: (Bits) Value seq3063 392 7e-105 >seq3063 Length=7092 Score = 392 bits (434), Expect = 7e-105 Identities = 339/420 (81%), Gaps = 0/420 (0%) Strand=Plus/Plus Query 10676 GGTAACCGCGTACGAGCAAACGGTGAACGAGGAGCGCAACTTTCAGAAAAGTTTTAACAA 10735 ||| |||||||||||||| ||||||||| ||||| |||||||| ||||| |||||||| Sbjct 6672 GGTTACCGCGTACGAGCAGACGGTGAACCAGGAGATTAACTTTCAAAAAAGCTTTAACAA 6731 Query 10736 TCACGTGCGCACCCTGGTGGCGCGCGAGGAGGTGGCCATTGGGCTGATGCATTTGTGGGA 10795 ||||||||||| || |||||||||||||||||||| || || ||||||||| ||||||| Sbjct 6732 CCACGTGCGCACGCTTGTGGCGCGCGAGGAGGTGGCTATAGGACTGATGCATCTGTGGGA 6791 Query 10796 CTTTATGGAGGCGTACGTGCAAAATCCTTCGAGCAAGCCGCTGACGGCGCAGCTGTTTTT 10855 |||| | ||| | |||||| || ||||||||||| | |||||||||||| | Sbjct 6792 CTTTGTAAGCGCGCTGGAGCAAAACCCAAATAGCAAGCCGCTCATGGCGCAGCTGTTCCT 6851 Query 10856 GATTGTGCAACACAGCCGGGACAACGAGGCTTTCCGCGAGGCCATGCTGAATATTGCGGA 10915 || ||||| |||||| ||||||||||||| ||| | || || |||| || || | || Sbjct 6852 TATAGTGCAGCACAGCAGGGACAACGAGGCATTCAGGGATGCGCTGCTAAACATAGTAGA 6911 Query 10916 GCCTGAGGGTCGCTGGCTTTTGGACCTGGTTAATATCCTTCAGAGCATTGTGGTACAGGA 10975 ||| ||||| |||||||| | || || | || || || |||||||| ||||| ||||| Sbjct 6912 GCCCGAGGGCCGCTGGCTGCTCGATTTGATAAACATTCTGCAGAGCATAGTGGTGCAGGA 6971 Query 10976 GCGCAGTCTAAGCCTGGCCGACAAGGTGGCGGCCATTAATTACAGCATGCTTAGCCTCGG 11035 |||||| | |||||||| ||||||||||| |||||||| || |||||| || || || Sbjct 6972 GCGCAGCTTGAGCCTGGCTGACAAGGTGGCCGCCATTAACTATTCCATGCTCAGTCTGGG 7031 Query 11036 CAAGTTTTACGCCCGCAAGATTTACAAAACCCCCTATGTGCCCATAGACAAGGAGGTTAA 11095 ||||||||||||||||||||| ||| | ||||| || || ||||||||||||||||| || Sbjct 7032 CAAGTTTTACGCCCGCAAGATATACCATACCCCTTACGTTCCCATAGACAAGGAGGTAAA 7091 Score = 125 bits (138), Expect = 2e-24 Identities = 255/376 (68%), Gaps = 17/376 (5%) Strand=Plus/Plus Query 15385 CAAGCGCAAGTTCAAAGAAGAGCTGCTGGAGGCCCTTGTGCCTGAAATCTATGGCCCTGC 15444 ||||||||| ||||||||||| |||| ||| | | | ||| || ||||||||||| | Sbjct 623 CAAGCGCAAAATCAAAGAAGAGATGCTCCAGGTCATCGCGCCGGAGATCTATGGCCCC-C 681 Query 15445 CGCGGACGTCA-AGCCCGACATTAAGCCTCGCGTGCTCAAGCGGGTTAAAAAGCGAGaaa 15503 || || | | ||| || ||||| || ||| |||||||| |||||| ||| Sbjct 682 CGAAGAAGGAAGAGCAGGATTACAAGCCCCGAAAGCTAAAGCGGGTCAAAAAGA---AAA 738 Query 15504 aaaaaGAGGAAAAGGAGGAAGCAGGGTTGCTAGACGACGGTGTTGAGTTTGTGCGGTCCT 15563 | ||||| || | || ||| || ||||||| || || | ||| | Sbjct 739 AGAAAGATGATGATGATGAA---------CTTGACGACGAGGTGGAACTGCTGCACGCAA 789 Query 15564 TTGCCCCCCGGCGGCGGGTGCAGTGGCGGGGACGTAAAGTCCAGCGCGTGCTTAGACCCG 15623 || ||| |||||||||| |||||| || || || || || | |||||| Sbjct 790 CCGCGCCCAGGCGGCGGGTACAGTGGAAAGGTCGACGCGTAAGACGTGTTTTGCGACCCG 849 Query 15624 GCACTACTGTAGTATTTACTCCCGGAGAGCGGTCCGTCACGCGGGCCTTAAAACGGGATT 15683 |||| || ||||| ||||| ||||| ||||| ||| || || ||| || || | | Sbjct 850 GCACCACCGTAGTTTTTACGCCCGGTGAGCGCTCC---ACCCGCACCTACAAGCGCGTGT 906 Query 15684 ACGATGAGGTTTACGCTGACGAAGACATTCTTGAGCAGGCCGCCCAACAGGTTGGGGAAT 15743 | |||||||| |||| ||||| ||| | |||||||||||| | | | | ||||| | Sbjct 907 ATGATGAGGTGTACGGCGACGAGGACCTGCTTGAGCAGGCCAACGAGCGCCTCGGGGAGT 966 Query 15744 TCGCCTACGGCAAGCG 15759 | |||||||| ||||| Sbjct 967 TTGCCTACGGAAAGCG 982 Score = 84.2 bits (92), Expect = 5e-12 Identities = 115/160 (72%), Gaps = 3/160 (2%) Strand=Plus/Plus Query 14814 ATGTACGGCGGCGCCAAACGGCGTTCTAGCCAACACCCTGTTCGCGTGCGCGGACATTAC 14873 |||| ||||| || || ||| || ||||||||| || ||||||||||| || ||| Sbjct 12 ATGTTTGGCGGGGCAAAGAAGCGCTCCGACCAACACCCAGTGCGCGTGCGCGGGCACTAC 71 Query 14874 CGCGCCCCCTGGGGGGCTTACACCCGCGGTGTTATCTCAAGACGTACCACCGTTGATGAC 14933 ||||| |||||||| || ||| ||||| | | | || |||||||| |||||| Sbjct 72 CGCGCGCCCTGGGGCGCGCACAAACGCGG---CCGCACTGGGCGCACCACCGTCGATGAC 128 Query 14934 GTCATTGACTCCGTGGTAGCCGATGCCCAACGCTACACGC 14973 | ||||||| | ||||| | || || | |||||||| Sbjct 129 GCCATTGACGCGGTGGTGGAGGAGGCGCGCAACTACACGC 168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 109357603953408