Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20
2012-03-01] 4,309 sequences; 273,786,188 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq3345 524 9e-144
seq1351 84.2 3e-11
>seq3345
Length=207354
Score = 524 bits (580), Expect = 9e-144
Identities = 1106/1627 (68%), Gaps = 51/1627 (3%)
Strand=Plus/Minus
Query 52788 TTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGAT 52847
|||||||| | ||||| | || || ||||| | | | ||| ||||| || |||| |
Sbjct 113397 TTATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGT 113338
Query 52848 AGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGG 52907
|||||||||| ||||||| ||| | |||| ||| ||||| || || |||||
Sbjct 113337 AGTACATTCCTGTTTTTAAACCCATTTTCCAAGCGTGGAAATGAATCGACGTAAGTTTTC 113278
Query 52908 AATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCC 52967
||| | || | || | ||| || || | |||||||||||| || || || ||||| |
Sbjct 113277 CATAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATAAAAGCTCCTC 113218
Query 52968 TGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACT 53026
| || || ||||| | |||| || || ||| ||| ||||| | ||||| || || |
Sbjct 113217 TATCAGCTGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAAT 113158
Query 53027 CGCTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATAGATCCACCATCTACCATAATC 53083
| |||| | |||| |||| ||| | |||| | ||||||||| | |||||
Sbjct 113157 CTCTTATT-TCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATA 113099
Query 53084 CTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGA 53143
||| || || || |||| ||| || | | || ||| | | || ||||| |
Sbjct 113098 AGATTTTTCATATCTTCATCCCACAAATCAGCCCGAGTCAAATCAGTCAGAAGATGATGG 113039
Query 53144 TTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGT 53203
|| ||||| ||||||||||||| || ||||| | ||||||||| ||| | |||
Sbjct 113038 TTCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAAGGGT 112979
Query 53204 TCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 53263
|| | ||| ||| | || || | |||||| ||||| || ||||||||||| || || | |
Sbjct 112978 TCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATTGGAGCTATC 112919
Query 53264 AATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCC 53321
|||| | ||| | | ||| ||||| || || || ||||| || | |||| | ||
Sbjct 112918 AATAGAGAATTGCGCAAACC--ATGTTTTGCTATCTTTTCTTTGAGGGCAGCCCAGTCCC 112861
Query 53322 AAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTAC 53380
|||| || | || || || ||||| | || || | ||
Sbjct 112860 AAAGGTCTGTAGGAGTTTTGTCCCACATATCATACTGGAGGATACCTTGGCTTGCTGGAC 112801
Query 53381 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 53440
||| |||||| ||||| ||||| || ||||||| ||||||||| || ||||||
Sbjct 112800 TC-CCTTGATATGTGCTGTATGCACCTTCTTTTTCAGCTAATTCACAACTAGCTTCTAAT 112742
Query 53441 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 53500
||||| |||||||| ||||| || || | | ||| ||| | ||||| | || ||
Sbjct 112741 GCACCATAATAAATTGTTTCAAATATTTGTTGATTGAGAAGTATTGCTTTCTCACTTTCG 112682
Query 53501 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 53560
| | | | | | | |||||| ||||| | || |||||||||||||| ||||||
Sbjct 112681 TAAGAAATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATACCAATAGGT 112622
Query 53561 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 53620
||||||||| |||| || ||| ||||| || | ||||||| |||||| ||| |||| |
Sbjct 112621 CTATGTCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAATTAACATCAATAACT 112562
Query 53621 TTATTGAGGTTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT 53677
|| || | ||| | ||||| ||||| | || || | ||| ||||| ||||
Sbjct 112561 TTGTTTAAATTTTGAGTTACAAT--CTTTGTG-ATTTCTTTTAATTTTTTAAAATTAAAT 112505
Query 53678 TGTCCATCTATT----ACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTAC 53733
| || |||| ||||||||||| | ||| || || || || || || || || ||
Sbjct 112504 ---CTAT-TATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCAC 112449
Query 53734 CTCATTAGCATCCGCA---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGT 53790
|||| | || | | ||||| | | ||||||||||||||| ||||| || || ||
Sbjct 112448 TTCAT---CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGT 112392
Query 53791 TCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGT 53850
|| | ||||| ||||||||||||| ||||||| ||||||||||| | ||| |||| ||
Sbjct 112391 GCCAAGATTTTTTTGATTACTCTTTCTGTTACAAGCATCCTTATACAACATGTATGGTGT 112332
Query 53851 ACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGA 53910
|||||| || | |||| ||||||||| | ||||| | | |||| | | | |
Sbjct 112331 ACCAGTCTCTACTTGGGCTTCTATAATTGACTTCCATAACTCTTGAGCTCTGACTT--GT 112274
Query 53911 TTTGTATCTCTTTTCTCTT--TCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAA 53968
||| || || ||| |||| || ||| | ||| | | |||||| || ||||| ||
Sbjct 112273 TTTATAAATCGTTTTTCTTCTTCATATTTGGCATATAGTTCTTCAAATTCCTCTCCA-AA 112215
Query 53969 ACATTGTCCAAT-CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT 54027
|| | | | |||||||| |||| |||||||| | ||| || ||||||||
Sbjct 112214 GCAGTCAGCGAGGCCAGGACAATCATGAGGACACATGAGACTCCAAACT---TCATCCTT 112158
Query 54028 C---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084
|||| ||||||||| ||||| || ||||| | || ||| || ||||| | |||
Sbjct 112157 TTCTACTCTTTTCATAAACAGATCTGGTATCCATAAGGCATAAAACAGTTCTCTAGCTCT 112098
Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144
||| || || || || ||||| || | ||| | ||| | | || || | ||||||
Sbjct 112097 CATTTCTTCCTTACCCGTGTTCTTCTTTAAATCCAAGAATTCAAATATGTCTGCATGCCA 112038
Query 54145 CGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCT 54204
|| || || || || | | | || || ||||||||||| || ||||||| |||||
Sbjct 112037 AGGCTCTAAATAAATCGCAAATGCACCGGGACGTTTGTTTCCACCTTGATCTACATATCT 111978
Query 54205 AGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCC 54264
|| || || ||||| |||||||||||||| | | |||||| || | ||||| || ||
Sbjct 111977 GGCAGTATTGTTATACACTCTCAACATTGGCACTAGACCATTCGAGACCCCATTAGTGCC 111918
Query 54265 GGAGATATAGCTTCCACTG-GCACGAAT---ATTACTAATTGATAGACCTATCCCCCCTG 54320
| || || || ||| || | || || || || || |||||| || || |
Sbjct 111917 AGCTATGTAAGAACC-CTGAGCTCTGATGCAATGTGTA--TG-TAAACCTATGCCACCAG 111862
Query 54321 CCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCAT 54380
| |||||| |||||||| ||| ||||||| |||||| | || || || || ||||| |
Sbjct 111861 CAGATTTAGAAATTAATGCACATTGTTTTAAAGTATCAAAAATACCTTCAATGCTATCGT 111802
Query 54381 CCATCAT 54387
| ||||
Sbjct 111801 CTTTCAT 111795
Score = 96.9 bits (106), Expect = 4e-15
Identities = 88/111 (79%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 54568 CTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 54627
||| |||||||| |||| ||| || ||| ||||||||||||| ||||||||||| |||||
Sbjct 111270 CTTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTGAAACCAAAATAATTGTA 111211
Query 54628 TGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTT 54678
| ||| |||| || |||| |||| | |||| | ||| ||||| | |||
Sbjct 111210 TTTAAAATCTCTATCATAAACAATAGCAGAGTCTAATTTGTCCTTGTTTTT 111160
Score = 86.0 bits (94), Expect = 7e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 54779 TTTTTTGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCC 54838
|| || || ||||| |||| ||| |||| |||||||| || || | ||||||||||||
Sbjct 110521 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATGGCATAATCG 110462
Query 54839 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTT 54898
||||| | ||| || ||| ||||| ||||| || | ||| | || | || | |||
Sbjct 110461 GGATGATCTGTGGTCTTAGTAGCTGCAATTTCAGCAGCTAGATTATCAAGCTCAGCAGTT 110402
Query 54899 GTTACTCCATTATATATTCC 54918
||||| ||| |||||| ||
Sbjct 110401 GTTACACCAGAATATATGCC 110382
>seq1351
Length=825266
Score = 84.2 bits (92), Expect = 3e-11
Identities = 84/109 (77%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 24621 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 24680
|| |||| || |||||||| | |||||||| ||||| || || ||||||||||| | |
Sbjct 602570 TTGGATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGC 602629
Query 24681 CAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTT 24729
|| || || ||||||| ||||| || |||||||| | | |||||||
Sbjct 602630 CATATATCTGGATATTGGATTGGGAATATAACAAAACGTCTAGGATTTT 602678
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593689620670320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |