Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq3463 199 3e-46 seq3424 107 2e-18 seq2787 105 6e-18 seq1305 84.2 2e-11 >seq3463 Length=282612 Score = 199 bits (220), Expect = 3e-46 Identities = 679/1039 (65%), Gaps = 48/1039 (5%) Strand=Plus/Plus Query 105613 ACGCCGGTCCAGCCGCGGCCGTACATGGCGACGCCCACAATTATTTTGTTGGGATCGACG 105672 ||||| ||||| || || || ||||| || || || || | || || || |||| || Sbjct 182141 ACGCCAGTCCAACCACGACCATACATAGCAACACCTACTACAATCTTCTTAGGATTCACT 182200 Query 105673 CCTTGTTTCAGTAACGCATCGACAGCGTAGTGTGTAGTGTATAGCT--CTTCCGAGTTCC 105730 || || ||| || | || || ||| | ||||| || | ||| || |||| Sbjct 182201 CCCTGCGCCAGCAAGTATTTTACTCCGAAGTCAGATGTGTA-AGTTTCCTTGGGA-TTCC 182258 Query 105731 AACTTGGCGCGTAGACTGTTGTTTGGTAGCCCAAATCCGTG-TTTGACCAAGCCCCTTTA 105789 | ||||||||| | || ||||| | | |||| || |||||||| || || || Sbjct 182259 ACGCTGGCGCGTACAATGGCGTTTGAT-GTCCAAGAGTGTCATTTGACCAGGCTCCCTTG 182317 Query 105790 AAATCGTAACTCATGAG--AAATATTTTGCCTAATGACTTTTGCGCTTCGGCGTAGTTTA 105847 || ||||||||||| | |||||| | | || | ||||| || | | | |||| || Sbjct 182318 AAGTCGTAACTCATCAAGAAAATATGATCCATAT--AATTTTGAGCCTTGCCATAGTCTA 182375 Query 105848 CCACGGCAATCTTGTCGTAACCCGCGCTTATAGCGCTTGTTAATTCGTAAACCCTGCCGG 105907 | || || || || | || ||||| ||||| ||||||||||| | | || Sbjct 182376 CAACTTGGATTTTATCCCATCCAGCGCTAATAGCAGAAGTTAATTCGTATTTCTTACCAT 182435 Query 105908 TTTGCGCTTCGAGGTCGTCTAGCATTGCGCGCAGCTCCTCCAACAACAAAATGTATGTTT 105967 | | ||| ||| ||||| ||||| | || | || | || ||| | || | Sbjct 182436 TCTTAGCTGAGAGCTCGTCGAGCATCTCACGTAATTCTTTCATCAAACTTACATAACAAT 182495 Query 105968 TGGCGTCACCGTCCGCATCGC--CCAACGAC-GGGTTAGCCCCTTTGCCGCCCGGAAACT 106024 |||| || | || || | | | |||||||| |||||||| || || |||| Sbjct 182496 ------CACCATCTTCTGGGCTACCGAGGTCAGGGTTAGCACCTTTGCCACCAGGGAACT 182549 Query 106025 CCCAATCGATGTCTACACCGTCAAAGAATTTCCACACTTGCAGAAATTCCTTAACCGAAT 106084 |||||||||| || ||||| || ||||||||||| | | ||||| ||||| || || | Sbjct 182550 CCCAATCGATATCAACACCATCGAAGAATTTCCATGTTAGAAGAAACTCCTTTACTGACT 182609 Query 106085 CTACAAAAACGT-TTCT------TTTTTCAACATCGTGCATAAAATAAAATGGGTCTGAT 106137 ||||| ||| |||| ||| ||||| | ||| | || || || | Sbjct 182610 GCACAAAT-CGTGTTCTCTTAGATTTGTCAACT------AAAAAGAAGAAAGGATCGGCA 182662 Query 106138 AGAGTCCAGCCTCCTATTGAAGGAAGAATTTTTAAATGGGGGTTTGCTAATTTTGCCGCC 106197 || ||||| || || || || |||||||| || || | ||| ||| |||| | | Sbjct 182663 AGCGTCCACCCACCAATAGAGGGAAGAATCTTCAATTCAGGGCGGGCTTGTTTTAGTGAC 182722 Query 106198 ATCAACTGTCCAAAATTGCCTTTATACGGCTCGTTCCAAGCGGACACACCTTTTTGGGGT 106257 || || || ||||| |||||||| || ||||||||||| | |||| |||||||| ||| Sbjct 182723 ATTAATTGGCCAAAGTTGCCTTTGTAAGGCTCGTTCCATGAAGACAATCCTTTTTGTGGT 182782 Query 106258 TTTTGTACGGCGGCCCACGGATCGTGAATGGCAACTTTGAAATCTTCGCGTCCCTTGCAC 106317 ||||||| || ||||| |||||||| || | |||||||| || || || || | || Sbjct 182783 TTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTGAAGTCCTCACGGCCGCTACAG 182842 Query 106318 GATCTTTGCAAAGATTCAAAGCTTCCGGGTATCGTTTTGAGGGCGTCGTTTATTCCATCG 106377 || | || | | || || || || ||| ||| | || || || || || Sbjct 182843 GACCGCTGTAGTGCTTGGAAACTGCCTTCGATCTCTTTTAAACTATCATTGATGCCGTCA 182902 Query 106378 CCGCCGCAGATGGGTATGAAACCATACAACAAGTGTGATAAATTTGGCAAGGGAACTTTG 106437 |||||||| || || || || || || | ||| || | | ||| || | || | Sbjct 182903 CCGCCGCAAATTGGGATAAAGCCGTAGAGCAAATGAGTAAGATTAGGTATAGGTATACGA 182962 Query 106438 TCTACGGGAAAGTTGCGCCCGTACACACCCCACTCAACAAAGTACGCAGCGACAATTTTA 106497 || ||||| || || | || |||||||| || || ||||| ||| | |||| ||| Sbjct 182963 TCCACGGGGAATTTCCTAGGATAGACACCCCATTCTACGAAGTAGGCACCCACAACTTT- 183021 Query 106498 TCC---TCTCT-CCTGCCAGGTTTGTTGTTTTCCAGCCATGTGTATTCGAGCGGTGCCAG 106553 ||| | | | | || || || || ||||| | |||| ||||| || || | | Sbjct 183022 TCCAGATGTTTGCTTGAACGGCTTATTTTTTTCTCCCAATGTATATTCCAGAGGAGGTAA 183081 Query 106554 ATGGCCGCCGTCGGTGTCTGCGACTTTGACCAACAC---GGGATCGCT--CACGGAACAG 106608 ||| | || ||||| || || || ||| | | |||||| || || | ||| Sbjct 183082 ATGACTTCCATCGGTATCGGCCAC---GACAATTTCGGTGGGATCACTTGAACTG--CAG 183136 Query 106609 CCGTCCTCATTGCAAAGTT 106627 ||||| ||||||||||||| Sbjct 183137 CCGTCGTCATTGCAAAGTT 183155 >seq3424 Length=494560 Score = 107 bits (118), Expect = 2e-18 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | || ||| |||| ||||| || || || ||| |||| | | Sbjct 289294 AATGCAAATTTTTGTAAAGACACTGACTGGCAAGACTATCACTTTGGAAGTGGAAGCTTC 289353 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || ||||| |||||| |||||||| ||| | ||| |||||| Sbjct 289354 TGATACAATTGAAAATGTTAAGGCGAAAATTCAGGATAAAGAGGGTATTCCCCCAGATCA 289413 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTAC 29138 ||||||||||| ||||| || || || || |||||| | | ||||| | || ||| Sbjct 289414 GCAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACACTAT--CTGACTAC 289471 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||||||||||||||||| ||| | ||| |||| Sbjct 289472 AATATTCAGAAGGAATCAACTTTGCACCTGGT 289503 Score = 107 bits (118), Expect = 2e-18 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||||||||| | || ||| |||| ||||| || || || ||| |||| | | Sbjct 289522 AATGCAAATATTTGTAAAGACACTGACTGGCAAGACTATCACATTGGAAGTGGAAGCTTC 289581 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || ||||| |||||| |||||||| || | ||| |||||| Sbjct 289582 TGATACAATTGAAAATGTTAAGGCGAAAATTCAGGATAAAGAGGGCATTCCCCCAGATCA 289641 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTAC 29138 ||||||||||| ||||| || || || || |||||| | | ||||| | || ||| Sbjct 289642 GCAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACACTAT--CTGACTAC 289699 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||||||||||||||||||||| | || |||| Sbjct 289700 AATATTCAGAAGGAATCTACTTTGCATCTGGT 289731 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||||||||| | || ||| |||| |||||||| || || ||| ||| | | Sbjct 289066 AATGCAAATATTTGTAAAGACACTGACTGGCAAAACTATCACATTGGAAGTGGAGGCTTC 289125 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || ||||| ||||||| || |||||||| | || || || Sbjct 289126 TGATACAATAGAAAATGTTAAGGCAAAAATTCAAGACAAAGAAGGCATTCCTCCTGACCA 289185 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| || ||||| ||||| || ||||| ||||||||| || || | ||||| || Sbjct 289186 ACAGAGGCTTATTTTTGCAGGAAAACAGCTGGAAGATGGACGTACACTGTCAGATTATAA 289245 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTG 29171 |||||| |||||||||||| | ||| ||||| Sbjct 289246 TATTCAAAAGGAATCTACTTTGCACTTGGTG 289276 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | ||||||||||| |||||||| |||||| ||| ||| | | Sbjct 289979 ATGCAAATTTTTGTGAAAACATTGACTGGCAAAACTATTACCTTGGAAGTGGAGGCTTCT 290038 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || ||||| ||| ||| || || ||||| | || ||||||| Sbjct 290039 GACACAATAGAAAATGTTAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAGATCAA 290098 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||||| || || || || || |||||||||||| || || | || || ||| Sbjct 290099 CAAAGACTGATTTTCGCCGGAAAGCAACTGGAAGATGGACGCACATTGTCGGACTATAAT 290158 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || |||||||| |||||| | || | || || || || |||| || Sbjct 290159 ATCCAGAAGGAGTCTACTTTGCATTTAGTTTTGCGTCTAAGAGGTGG 290205 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| ||| | || ||| |||| ||||| || || || ||| || || | Sbjct 288838 AATGCAAATTTTCGTAAAGACACTGACTGGCAAGACTATCACTTTGGAAGTTGAGCCTTC 288897 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || |||| |||||| |||||||| || | ||| |||||| Sbjct 288898 TGATACAATTGAAAATGTTAAAGCGAAAATTCAGGATAAAGAGGGAATTCCCCCAGATCA 288957 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTAC 29138 ||||||||||| ||||| || || || || |||||| | | ||||| | |||||| Sbjct 288958 GCAAAGACTTATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACACTAT--CTGATTAC 289015 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 || |||||||| ||||||||| | ||| | || |||| Sbjct 289016 AACATTCAGAAAGAATCTACTTTGCACCTAGTACTACG 289053 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/201 (71%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||||||||| | || ||| |||| ||||| || || || ||| || ||| | Sbjct 289750 AATGCAAATATTTGTGAAGACACTGACTGGCAAGACTATCACACTGGAAGTTGAGCCCTC 289809 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || ||||| |||||| ||||| ||||| | || ||| || Sbjct 289810 TGACACAATCGAAAATGTTAAGGCCAAAATTCAAGATAAGGAAGGCATTCCTCCAGACCA 289869 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTAC 29138 |||||| ||||| ||||| || || ||||| || ||| | | ||||| | || ||| Sbjct 289870 ACAAAGGCTTATTTTTGCTGGAAAGCAACTTGAGGATGGACGTACACTAT--CAGACTAC 289927 Query 29139 AATATTCAGAAGGAATCTACT 29159 ||||||||||| ||||||||| Sbjct 289928 AATATTCAGAAAGAATCTACT 289948 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | || ||| |||| || ||||| || || ||| |||| | | Sbjct 290435 ATGCAAATTTTTGTAAAGACACTGACTGGGAAAACTATCACTTTGGAAGTGGAAGCTTCT 290494 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || ||||| ||| ||| ||||| ||||| | || ||||||| Sbjct 290495 GATACAATAGAAAATGTTAAGGCAAAGATTCAAGATAAGGAAGGCATTCCTCCAGATCAA 290554 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 |||||||| || || || || || |||||||||||| | | | ||| | || || | Sbjct 290555 CAAAGACTGATTTTCGCCGGAAAGCAACTGGAAGATGGGCGCACATTAT--CAGACTATA 290612 Query 29140 ATATTCAGAAGGAATCTACTCTTCAC 29165 |||| ||||| |||||||| |||||| Sbjct 290613 ATATCCAGAAAGAATCTACCCTTCAC 290638 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/217 (69%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | ||||| || || || |||||||| || ||| |||| | | Sbjct 288611 ATGCAAATCTTCGTAAAAACTTTAACTGGGAAAACCATCACATTGGAAGTGGAAGCTTCT 288670 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||| ||| ||| || || ||||| | || ||||||| Sbjct 288671 GATACAATCGAAAACGTAAAGGCAAAGATTCAAGACAAGGAAGGCATCCCTCCAGATCAA 288730 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 |||||||| || || || || || ||| |||||||| | | ||| | | || || | Sbjct 288731 CAAAGACTAATTTTCGCCGGAAAGCAATTGGAAGATGGGCGCACACTCT--CAGACTATA 288788 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 |||| ||||||||||||||| | ||| | || ||||| Sbjct 288789 ATATCCAGAAGGAATCTACTTTGCACTTAGTTTTACG 288825 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | || ||| |||| || ||||| || || || |||| | | Sbjct 290206 AATGCAAATTTTTGTAAAGACACTGACTGGGAAAACTATCACTTTGGAGGTGGAAGCTTC 290265 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || ||||| ||| ||| ||||| ||||| | || |||||| Sbjct 290266 TGATACAATAGAAAATGTTAAGGCAAAGATTCAAGATAAGGAAGGCATTCCTCCAGATCA 290325 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||||||||| || || || || || |||||||||||| || || | || || || Sbjct 290326 ACAAAGACTGATTTTCGCCGGAAAGCAACTGGAAGATGGACGCACATTGTCGGACTATAA 290385 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||| |||||||| |||||| | || | || || || || |||| || Sbjct 290386 TATCCAGAAGGAGTCTACTTTGCATTTAGTTTTGCGTCTAAGAGGTGG 290433 >seq2787 Length=76071 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||||||||| |||||||| | || || ||||| || || ||| || || | Sbjct 40874 AATGCAAATATTTGTCAAAACACTTACTGGAAAAACAATAACTTTGGAAGTTGAGCCATC 40933 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | || |||| || ||| ||||| ||||| | || |||||| Sbjct 40934 AGACACCATTGAAAATGTTAAAGCTAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCA 40993 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 |||| | |||||||| || || ||||||||||||||| | || || | || ||||| Sbjct 40994 ACAACGTCTTATCTTCGCTGGTAAACAACTGGAAGATGGCCGCACCCTGTCTGACTACAA 41053 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||| ||||| || || || |||||| |||| | || | |||||||| Sbjct 41054 TATCCAGAAAGAGTCGACCCTTCACTTGGTACTCCGTCTCCGAGGAGG 41101 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||||||||| ||||||||||||| || || ||||||||| ||| ||||| | Sbjct 40647 ATGCAAATATTTGTCAAAACATTGACTGGAAAGACCATTACCCTGGAAGTAGAACCATCT 40706 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || ||||| ||||| || || | ||| ||| ||| Sbjct 40707 GACACAATCGAGAATGTCAAAGCTAAAATACAGGATAAGGAGGGCATCCCCCCAGACCAA 40766 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | || || ||||| || || ||| |||||||| ||| || | ||||||||| Sbjct 40767 CAACGTCTCATTTTTGCTGGAAAGCAATTGGAAGATGGTCGCACTTTGTCTGATTACAAT 40826 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTG 29171 |||||||| || || || || ||| | ||| Sbjct 40827 ATTCAGAAAGAGTCAACCCTGCACTTAGTG 40856 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || | || ||| |||| || ||||| || || ||| |||||| || Sbjct 41103 ATGCAGATCTTTGTAAAGACACTGACAGGGAAAACTATCACATTAGAAGTTGAACCCTCA 41162 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || |||| || || || ||||| ||| | ||| ||||||| Sbjct 41163 GACACTATTGAAAATGTTAAAGCCAAGATCCAAGACAAAGAGGGTATTCCCCCAGATCAA 41222 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | || || || || ||||| || ||||| ||| ||| | | || |||||| Sbjct 41223 CAACGTCTCATTTTCGCTGGCAAGCAGCTGGAGGATGGGCGTACTCTTTCTGACTACAAT 41282 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||| || || ||| | ||| | || ||||| ||||||||||| Sbjct 41283 ATTCAGAAAGAGTCCACTTTGCACTTAGTATTACGTTTACGAGGAGG 41329 Score = 82.4 bits (90), Expect = 7e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || ||||| ||| | ||| ||||||||| || ||||| ||||| || |||||||| ||| Sbjct 39828 GACAAAGAGGGTATTCCCCCAGATCAACAGAGGCTTATTTTTGCTGGAAAACAACTAGAA 39887 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 ||| | || | | ||||| |||||||| ||||||||||| || || Sbjct 39888 GATGGCCGTACATTATCTGATTATAATATTCAAAAGGAATCTACCCTACA 39937 >seq1305 Length=286731 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 28953 AGTGTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACG 29012 ||| | | ||||||||| ||| |||| || | ||||| |||||||||||| ||| | Sbjct 24993 AGTCTCACAATGCAAATTTTCGTCAAGACCCTTACGGGTAAAACCATTACCCTCGAGGTG 24934 Query 29013 GAACCCGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCC 29072 || || | || || | | || | || ||||| ||||| |||||| | || Sbjct 24933 GAGGCCTCCGATACTATAGAAAATGTAAAAGCTAAAATCCAAGATAAGGAAGGTATTCCA 24874 Query 29073 GTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCC 29132 ||| || ||| | | |||||||| || |||||||| |||||| || || | Sbjct 24873 CCAGACCAGCAACGTTTGATCTTTGCTGGTAAACAACTAGAAGATGGACGTACATTGTCT 24814 Query 29133 GATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||| ||||| |||||||| || | || | ||| | ||| | || ||||| Sbjct 24813 GACTACAACATTCAAAAGGAATCCACATTGCATCTTGTGCTTCGACTTCGCGGAGG 24758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428313505533395