Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20
2012-03-01] 4,309 sequences; 273,786,188 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq3463 192 5e-44
seq3424 114 1e-20
seq2396 114 1e-20
seq2787 107 2e-18
seq1305 93.3 4e-14
seq325 87.8 2e-12
>seq3463
Length=282612
Score = 192 bits (212), Expect = 5e-44
Identities = 433/643 (67%), Gaps = 7/643 (1%)
Strand=Plus/Plus
Query 102323 TTGGACCACGCGCCCTTAAAATCGTAACTCATGAGGAATATTTTATCAAGGAACCTTTGA 102382
|| ||||| || ||||| || ||||||||||| | ||| || | ||| | | |||||
Sbjct 182300 TTTGACCAGGCTCCCTTGAAGTCGTAACTCATCAAGAAAATATGATCCATATAATTTTGA 182359
Query 102383 GCCGCGTCGTACTTCACCACGGCAATTTTGTCGTAGCCCGAACTAATCGCGCTCGTCAGC 102442
||| | | || | || || ||||| || | || | ||||| || || |
Sbjct 182360 GCCTTGCCATAGTCTACAACTTGGATTTTATCCCATCCAGCGCTAATAGCAGAAGTTAAT 182419
Query 102443 TCGTACGTCTTGTTCGTTTGCAGCTGC-AGTTCGTCCAGCATGGCGCGCAACTCTTTCAG 102501
||||| |||| | || ||||| || ||||| ||||| | || || |||||||
Sbjct 182420 TCGTATTTCTTAC-CATTCTTAGCTGAGAGCTCGTCGAGCATCTCACGTAATTCTTTCAT 182478
Query 102502 CAAAACAAGGTACGTGTCGGCGTCGCGCTCGCCGTTGCCGAGCGCCGGGTTGGCGCCCTT 102561
|||| | || || | || || | | | ||||| | ||||| || || ||
Sbjct 182479 CAAACTTACATAACAATCACCATCTT-CTGGGC--TACCGAGGTCAGGGTTAGCACCTTT 182535
Query 102562 GCCGCCCGGAAACTCCCAATCGATGTCCACCCCGTCGAAAAACTTCCACACCTGCAAAAA 102621
||| || || |||||||||||||| || || || ||||| || ||||| | | |||
Sbjct 182536 GCCACCAGGGAACTCCCAATCGATATCAACACCATCGAAGAATTTCCATGTTAGAAGAAA 182595
Query 102622 CTCTTTAACGGATTCGACAAACACGCGC-CGCTTGTCCGCGTCGTGCATGAAATAGAACG 102680
||| || || || | ||||| || | | ||| ||| | || |||| |
Sbjct 182596 CTCCTTTACTGACTGCACAAAT-CGTGTTCTCTTAGATTTGTCAACTAAAAAGAAGAAAG 182654
Query 102681 GGTCGGACAGCGTCCAGCCGCCAATGGACGGCAGGATTTTCAAATGCGGGTTTGCCAGCT 102740
| |||| |||||||| || ||||| || || || || ||||| | ||| || | |
Sbjct 182655 GATCGGCAAGCGTCCACCCACCAATAGAGGGAAGAATCTTCAATTCAGGGCGGGCTTGTT 182714
Query 102741 TGGCCGCCATCAACTGGCCAAAGTTGCCTTTGTAGGGCTCGTTCCATGCGGATACGCCCT 102800
| | ||| || |||||||||||||||||||| ||||||||||||| || | || |
Sbjct 182715 TTAGTGACATTAATTGGCCAAAGTTGCCTTTGTAAGGCTCGTTCCATGAAGACAATCCTT 182774
Query 102801 TTTGCGGCTTTTGTATGGCGGCCCACGGGTCGTGGATAGCGACCTTAAAGTCTGCGCGGC 102860
|||| || ||||||| || ||||| || |||||||| | ||| || ||||| | ||||
Sbjct 182775 TTTGTGGTTTTTGTAATGCTGCCCATGGATCGTGGATTGAGACTTTGAAGTCCTCACGGC 182834
Query 102861 CTTTGCACGAGCGCTGCAGCGCTTCAAAACTGCCGGGAATGGTCTTGAGCGCGTCGTTTA 102920
| | || || ||||| || |||| |||||||| || || | || || |
Sbjct 182835 CGCTACAGGACCGCTGTAGTGCTTGGAAACTGCCTTCGATCTCTTTTAAACTATCATTGA 182894
Query 102921 GCCCGTCGCCGCCGCAAATCGGGATGAAGCCGTACAGCAGATG 102963
||||| ||||||||||| ||||| |||||||| |||| |||
Sbjct 182895 TGCCGTCACCGCCGCAAATTGGGATAAAGCCGTAGAGCAAATG 182937
>seq3424
Length=494560
Score = 114 bits (126), Expect = 1e-20
Identities = 153/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
||||||| |||||||| || ||||||||||| ||||| || | ||| || | | ||
Sbjct 289278 AGCACCAAGTGCAAAGTAGATTCCTTTTGAATATTATAATCTGACAGTGTACGTCCATCT 289219
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
||||||||||| || ||| ||||||| ||||| ||||| || | |||||| |||||
Sbjct 289218 TCCAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTGTCT 289159
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
|| ||| || || | | | |||||| | |||| ||||| || || ||
Sbjct 289158 TGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCCTCCACTTCCAATGTGATAGTT 289099
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176
||||| || | || || |||||||||||||||
Sbjct 289098 TTGCCAGTCAGTGTCTTTACAAATATTTGCATT 289066
Score = 102 bits (112), Expect = 7e-17
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 20972 ATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTG 21031
||||||||| |||||||| || || |||||||||| || || | | || ||||| ||
Sbjct 290182 ATGCAAAGTAGACTCCTTCTGGATATTATAGTCCGACAATGTGCGTCCATCTTCCAGTTG 290123
Query 21032 TTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTT 21091
|| || || |||| ||||| || || || || | |||||||||||| |||||
Sbjct 290122 CTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTT 290063
Query 21092 TTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGT 21151
| || || | | | || ||| | |||| ||||| |||||| || ||||| ||
Sbjct 290062 TGCCTTAACATTTTCTATTGTGTCAGAAGCCTCCACTTCCAAGGTAATAGTTTTGCCAGT 290003
Query 21152 TAACGTTTTGACAAATATTTGCAT 21175
|| ||||| ||||| ||||||||
Sbjct 290002 CAATGTTTTCACAAAAATTTGCAT 289979
Score = 100 bits (110), Expect = 2e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006
|||| |||| ||||| || |||| ||||||||| || ||||| ||||| || ||||| |
Sbjct 289751 TTCCACCTCTCAGCCGCAGTACCAGATGCAAAGTAGATTCCTTCTGAATATTGTAGTCAG 289692
Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066
|| || | | || || ||||| || || ||| |||||||||| ||||| || ||
Sbjct 289691 ATAGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGG 289632
Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126
| | ||| || || || || || || || | | | |||||| | |||
Sbjct 289631 GAATGCCCTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCTTCCA 289572
Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176
||||| || || |||||||| || | || || |||||||||||||||
Sbjct 289571 CTTCCAATGTGATAGTCTTGCCAGTCAGTGTCTTTACAAATATTTGCATT 289522
Score = 91.5 bits (100), Expect = 1e-13
Identities = 152/220 (69%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032
|||||||| || ||||| || || |||||||| | || || | | || |||| ||
Sbjct 288813 TGCAAAGTAGATTCCTTCTGGATATTATAGTCTGAGAGTGTGCGCCCATCTTCCAATTGC 288754
Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092
|| || || |||| ||||| || || || || | |||||||||||| ||||||
Sbjct 288753 TTTCCGGCGAAAATTAGTCTTTGTTGATCTGGAGGGATGCCTTCCTTGTCTTGAATCTTT 288694
Query 21093 TGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTT 21152
|| || | ||| |||||| | ||| ||||| || ||||| || || |||
Sbjct 288693 GCCTTTACGTTTTCGATTGTATCAGAAGCTTCCACTTCCAATGTGATGGTTTTCCCAGTT 288634
Query 21153 AACGTTTTGACAAATATTTGCATTTTGAATCTCTTATAAA 21192
|| ||||| || || |||||||| ||||||| | | |||
Sbjct 288633 AAAGTTTTTACGAAGATTTGCATGATGAATCTGTAAAAAA 288594
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| |||| ||| | || || | ||| ||||| || || || ||||| || ||||| |
Sbjct 289977 CCACCTCTCAGACGAAGTACTAAATGTAAAGTAGATTCTTTCTGAATATTGTAGTCTGAT 289918
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || | | ||||| || || || || ||| ||||||| || || ||||| ||
Sbjct 289917 AGTGTACGTCCATCCTCAAGTTGCTTTCCAGCAAAAATAAGCCTTTGTTGGTCTGGAGGA 289858
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||||||||| || || || || || | ||| || ||| |||||| |
Sbjct 289857 ATGCCTTCCTTATCTTGAATTTTGGCCTTAACATTTTCGATTGTGTCAGAGGGCTCAACT 289798
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176
|||| || || |||||||| || | || || |||||||||||||||
Sbjct 289797 TCCAGTGTGATAGTCTTGCCAGTCAGTGTCTTCACAAATATTTGCATT 289750
>seq2396
Length=191974
Score = 114 bits (126), Expect = 1e-20
Identities = 104/131 (79%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 29354 CGCACAAACGGACACTGCGGCGCCCACCGCTTGTGGTCCGTTTCCGGGTCGTCGCCCCTT 29413
|||| || || ||||| |||||||| |||| ||||||| | | || |||||||||
Sbjct 136398 CGCAAGAAAGGGCACTGAGGCGCCCAGCGCTGGTGGTCCTTGGCGGGATCGTCGCCCGCA 136339
Query 29414 ACCCAATTCGTAATCTCTACCTTGCAAAACGCGCAGCGCACCTCGTCGCCGCGGCCCAAG 29473
||||| ||| |||| ||||| || |||||||||||||| || || |||||||||||||
Sbjct 136338 ACCCATTTCATAATTTCTACTTTACAAAACGCGCAGCGTACTTCATCGCCGCGGCCCAGA 136279
Query 29474 TAGTAGAACCC 29484
|| ||||| ||
Sbjct 136278 TAATAGAAGCC 136268
>seq2787
Length=76071
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| |||||||| | || || | ||| | || |||||||| || ||||| ||||| | |
Sbjct 40417 CCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAC 40358
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
||||| | | || |||| || || || ||| | ||||| | |||||| || ||
Sbjct 40357 AGGGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGG 40298
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| || ||||| ||| || ||| || | | | ||||||| ||| ||| |
Sbjct 40297 ATGCCCTCTTTGTCTTGGATTTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCACT 40238
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||| |||||||||||| || |||| ||||| ||||| || |||||
Sbjct 40237 TCCAGGGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 40191
Score = 98.7 bits (108), Expect = 8e-16
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
|| || | ||||||||| || || ||||| ||||||||||||| ||| || || | |||
Sbjct 41542 AGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTATAGTCCGACAGAGTGCGGCCATCC 41483
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|| | |||||| || ||| | || || | ||| ||||| ||| | ||| ||||| ||
Sbjct 41482 TCTAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTATCT 41423
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
|||||| || || | ||| ||| || |||||| |||| || ||||||
Sbjct 41422 TGGATCTTAGCCTTAACATTTTCGATAGTGTCGGATGGCTCCACCTCCAAAGTGATGGTC 41363
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| || || | || || ||||| || |||||
Sbjct 41362 TTCCCAGTAAGAGTCTTAACAAAGATCTGCAT 41331
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| |||||||| | || || | ||| | || ||||| ||||| ||||| ||||| | |
Sbjct 40645 CCACCTCGCAGACGCAGTACTAAATGAAGGGTAGACTCTTTTTGGATGTTGTAGTCAGAC 40586
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
||||| | | || || ||||| ||||| ||| | ||||| | || || || |||
Sbjct 40585 AGGGTGCGACCATCTTCTAGCTGCTTGCCAGCAAAGATAAGACGTTGTTGATCTGGGGGA 40526
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| || || || || ||||| || || | | | || ||| ||||||
Sbjct 40525 ATACCCTCTTTATCTTGAATCTTAGCCTTTACATTTTCAATGGTGTCAGATGGCTCCACC 40466
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||| || || |||||||| |||| || |||||||||||||||||
Sbjct 40465 TCCAGAGTTATAGTCTTGCCTGTTAGTGTCTTGACAAATATTTGCAT 40419
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006
|||| || || || | ||||| | |||| || ||||| || ||||| || || || |
Sbjct 40875 TTCCACCACGGAGACGAAGCACTAAGTGCAGGGTTGACTCTTTCTGAATATTGTAATCAG 40816
Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066
|| || | | || |||| || || || ||| |||| || | || ||||| ||
Sbjct 40815 ACAAAGTGCGACCATCTTCCAATTGCTTTCCAGCAAAAATGAGACGTTGTTGGTCTGGGG 40756
Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126
| | ||| ||||| || || || ||| || | ||| || ||| || ||
Sbjct 40755 GGATGCCCTCCTTATCCTGTATTTTAGCTTTGACATTCTCGATTGTGTCAGATGGTTCTA 40696
Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
||||| |||||||||||| || || || ||||||||||||||||||||
Sbjct 40695 CTTCCAGGGTAATGGTCTTTCCAGTCAATGTTTTGACAAATATTTGCAT 40647
>seq1305
Length=286731
Score = 93.3 bits (102), Expect = 4e-14
Identities = 162/236 (69%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004
||| || || || || | ||||| | |||||| ||||| |||||||||||||| |||||
Sbjct 24754 GTTACCTCCGCGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGTAGTC 24813
Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064
| || || | | || || || ||||| || ||| | || | | ||||||||
Sbjct 24814 AGACAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGG 24873
Query 21065 GGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124
|| | |||||||| || ||| || ||| || | | | |||||| || |||
Sbjct 24874 TGGAATACCTTCCTTATCTTGGATTTTAGCTTTTACATTTTCTATAGTATCGGAGGCCTC 24933
Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180
| || | ||||||||| || || || | || ||||| || ||||||||| |||
Sbjct 24934 CACCTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCATTGTGA 24989
>seq325
Length=86326
Score = 87.8 bits (96), Expect = 2e-12
Identities = 86/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 38729 GGCGGCGTGGGGCTGAACCTGACCGGCGGCAACCACATCATCATGCTGGAGCCGCACTGG 38788
|||||||| |||||||| ||| ||||| | |||| | | ||||||| |||||||||
Sbjct 15391 GGCGGCGTAGGGCTGAATCTGTGCGGCGCTAGCCACCTGCTGCTGCTGGACCCGCACTGG 15332
Query 38789 AACCCGCAAATTGAGCTGCAGGCGCAAGACCGCATCCACCGCATGGGCCAG 38839
|||||||| | ||| |||||| || |||||| | ||||| |||| |||
Sbjct 15331 AACCCGCAGCTGGAGGAGCAGGCACAGGACCGCGTGTACCGCGTGGGGCAG 15281
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422237024662244
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