Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_001876.1 Length=34446 Score E Sequences producing significant alignments: (Bits) Value seq3063 179 8e-41 >seq3063 Length=7092 Score = 179 bits (198), Expect = 8e-41 Identities = 295/419 (70%), Gaps = 10/419 (2%) Strand=Plus/Plus Query 10396 GCTTACGAGCAAACGGTGAAGCAAGAGGCTAATTTTCAAAAGTCATTTAATAACCACGTG 10455 || |||||||| |||||||| || ||| ||| |||||||| ||||| ||||||||| Sbjct 6679 GCGTACGAGCAGACGGTGAACCAGGAGATTAACTTTCAAAAAAGCTTTAACAACCACGTG 6738 Query 10456 CGGACACTGATCTCCCGCGAGGAGACCACCCTGGGTTTGATGCACTTGTGGGACTTTGCG 10515 || || || | | ||||||||| | | || ||||||| |||||||||||| Sbjct 6739 CGCACGCTTGTGGCGCGCGAGGAGGTGGCTATAGGACTGATGCATCTGTGGGACTTTGTA 6798 Query 10516 GAGGCATACGCGCAGAACCCCGGCAGCAAGACCCTTACGGCCCAAGTCTTTCTCATCGTG 10575 || | ||| ||||| |||||| | || | ||| || | || || || ||| Sbjct 6799 AGCGCGCTGGAGCAAAACCCAAATAGCAAGCCGCTCATGGCGCAGCTGTTCCTTATAGTG 6858 Query 10576 CAGCACTTGCAAG----ATGAGGGCATTTTTGGGGAAGCTTTCTTAAGCATAGCAGAGCC 10631 |||||| ||| | | || |||| || |||| || | ||| ||||| |||||| Sbjct 6859 CAGCAC-AGCAGGGACAACGA-GGCA--TTCAGGGATGCGCTGCTAAACATAGTAGAGCC 6914 Query 10632 CGAGGGACGATGGATGCTAGATCTGCTAAACATATTGCAGTCCATTGTGGTGCAAGAGCG 10691 |||||| || ||| |||| ||| || ||||||| ||||| ||| |||||||| ||||| Sbjct 6915 CGAGGGCCGCTGGCTGCTCGATTTGATAAACATTCTGCAGAGCATAGTGGTGCAGGAGCG 6974 Query 10692 CCAGCTTTCG-CTATCTGAAAAGGTAGCCGCGGTGAACTACTCCGTAGTTACCCTGGGCA 10750 |||||| | || |||| ||||| ||||| | ||||| ||| | | | ||||||| Sbjct 6975 -CAGCTTGAGCCTGGCTGACAAGGTGGCCGCCATTAACTATTCCATGCTCAGTCTGGGCA 7033 Query 10751 AACATTATGCCCGCAAGATCTTTAAGAGCCCCTTTGTGCCGCTTGACAAGGAGGTGAAG 10809 | ||| ||||||||||| | | | ||| | || || | ||||||||||| ||| Sbjct 7034 AGTTTTACGCCCGCAAGATATACCATACCCCTTACGTTCCCATAGACAAGGAGGTAAAG 7092 Score = 87.8 bits (96), Expect = 4e-13 Identities = 126/177 (71%), Gaps = 3/177 (2%) Strand=Plus/Plus Query 15329 CAGTGGAAGGGCAGGCGGGTGCGCCGGGTTTTGCGTCCCGGCGTGGCCGTTAGTTTCACG 15388 |||||||| || | || || | || |||||||| |||||| |||| ||| ||| Sbjct 810 CAGTGGAAAGGTCGACGCGTAAGACGTGTTTTGCGACCCGGCACCACCGTAGTTTTTACG 869 Query 15389 CCCGGCGCGCGCTCCCTCCGTCCGAGTTCCAAGCGGGTGTATGACGAGGTGTACGCAGAC 15448 ||||| | ||||||| ||| | | |||||| |||||||| |||||||||| ||| Sbjct 870 CCCGGTGAGCGCTCCACCCGCACC---TACAAGCGCGTGTATGATGAGGTGTACGGCGAC 926 Query 15449 GACGACTTCTTAGAAGCGGCCGCGGCCCGTGAGGGGGAGTTTGCTTACGGAAAGCGG 15505 || ||| | | || |||| | || ||||||||||| |||||||||||| Sbjct 927 GAGGACCTGCTTGAGCAGGCCAACGAGCGCCTCGGGGAGTTTGCCTACGGAAAGCGG 983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 110099965965264