Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq3463 168 6e-37 seq2787 116 3e-21 seq3424 113 4e-20 seq1305 102 7e-17 >seq3463 Length=282612 Score = 168 bits (186), Expect = 6e-37 Identities = 347/510 (68%), Gaps = 12/510 (2%) Strand=Plus/Minus Query 21569 AAAATCGTGGCGGCCTACTTTGTCGAATGGGGAGTGTACCTGAGACAGTTCCCCGTCGAC 21628 ||| | |||| |||||||| || |||||||| || || | || | |||||||| || Sbjct 183021 AAAGTTGTGGGTGCCTACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTGGAT 182962 Query 21629 AAGGTGCCGGCGCCGAATCTATCACATATACTATACGGCTTCGTGCCGATATGCGGAGGC 21688 | || || ||||| | ||| | || |||||||| | || || ||||| || Sbjct 182961 CGTATACCTATACCTAATCTTACTCATTTGCTCTACGGCTTTATCCCAATTTGCGGCGGT 182902 Query 21689 GACGGCATCAACGACGCGCTAAAAACGGTGCCTGGCAGTTTTGAGGCATTGCAACGTTCG 21748 ||||||||||| || ||||| | | |||||||| | ||| | || || || Sbjct 182901 GACGGCATCAATGATAGTTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTACAGCGGTCC 182842 Query 21749 TGTGCGGGTCGGGCCGATTTCAAGGTGGCTATACACGATCCGTGGGCCGCAATACAAAAG 21808 ||| || || | || ||||| || | || |||||||| ||||| ||| ||||||| Sbjct 182841 TGTAGCGGCCGTGAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAA 182782 Query 21809 CCCCAAAAGGGCGTCTCGTCATGGAACGAACCGTACAAAGGCAACTTTGGTCAACTGATG 21868 || ||||| || | || ||||||||||| || ||||||||||||||||| ||| | ||| Sbjct 182781 CCACAAAAAGGATTGTCTTCATGGAACGAGCCTTACAAAGGCAACTTTGGCCAATTAATG 182722 Query 21869 GCAATGAAGAGGGCCAATCCTCACATTAAAG--TGTTCGCATCGATCGGCGGATGGACTC 21926 || | || ||| ||| | ||| ||| | ||| | || || || || ||||| | Sbjct 182721 TCACTAAAACAAGCCCGCCCTGA-ATTGAAGATTCTTC-CCTCTATTGGTGGGTGGACGC 182664 Query 21927 TGTCCGATCCATT----TTATCATATGCACGACGCCGACGTCAGACGGGTGTTTATCGAT 21982 | ||||||| || || | | || || | | | | ||| ||| | | Sbjct 182663 TTGCCGATCCTTTCTTCTTTTTAGTTG-ACAAATCTAAGAGAACACG---ATTTGTGCAG 182608 Query 21983 TCAGTTGAAGAATTTCTGCTCACGTGGAAGTTCTATGACGGCGTCCACATCGATTGGGAG 22042 ||||| | || ||||| || || ||||| |||| || || || | |||||||||||| Sbjct 182607 TCAGTAAAGGAGTTTCTTCTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAG 182548 Query 22043 TTTCCCGGCGGCAAGGGAGCCAACCCCGAC 22072 || || || ||||| || || ||||| ||| Sbjct 182547 TTCCCTGGTGGCAAAGGTGCTAACCCTGAC 182518 >seq2787 Length=76071 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||| |||||||| ||||| || || || |||||| |||||| | |||||| ||| Sbjct 41527 GTAGATTCTTTTTGGATGTTATAGTCCGACAGAGTGCGGCCATCCTCTAACTGTTTACCA 41468 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || ||||||||||||| || || || || ||||||||||| ||| || || ||| Sbjct 41467 GCAAAGATGAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTATCTTGGATCTTAGCCTTA 41408 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||||| ||||| | ||| ||||| | || | || || || || ||||| Sbjct 41407 ACATTTTCGATAGTGTCGGATGGCTCCACCTCCAAAGTGATGGTCTTCCCAGTAAGAGTC 41348 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 41347 TTAACAAAGATCTGCAT 41331 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| || || |||||||| || || ||||| ||| || | || || ||| Sbjct 40387 GTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAATTGCTTACCA 40328 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| |||||||||||||| || || |||||||| |||||| ||||| ||| Sbjct 40327 GCAAAGATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCTTGGATTTTAGCTTTT 40268 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||| | || || | | || || || | ||| | || || || || || ||| Sbjct 40267 ACATTTTCAATAGTATCAGAGGGTTCCACTTCCAGGGTAATGGTCTTTCCAGTTAGGGTT 40208 Query 118722 TTTACAAAAATCTGCAT 118738 || |||||||||||||| Sbjct 40207 TTAACAAAAATCTGCAT 40191 Score = 102 bits (112), Expect = 7e-17 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| ||||| | || |||||||| ||||| |||||||| || |||||| ||| || Sbjct 40856 CACTAAGTGCAGGGTTGACTCTTTCTGAATATTGTAATCAGACAAAGTGCGACCATCTTC 40797 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTG 118647 | || |||||||| | |||||||| || || || || || ||||||||||| | ||| Sbjct 40796 CAATTGCTTTCCAGCAAAAATGAGACGTTGTTGGTCTGGGGGGATGCCCTCCTTATCCTG 40737 Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTT 118706 | ||||| ||| || | |||| ||||| | || | || || || | ||| | || Sbjct 40736 T-ATTTTAGCTTTGACATTCTCGATTGTGTCAGATGGT-TCTACTTCCAGGGTAATGGTC 40679 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || |||| ||||| ||||| || ||||| Sbjct 40678 TTTCCAGTCAATGTTTTGACAAATATTTGCAT 40647 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| |||||||| | ||||| ||||||||||| || || || | |||||| || Sbjct 39719 CAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGAAAGAGTGCGTCCGTC 39660 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || | || ||||||||| | || | ||| || ||||| ||||| ||||| |||||||| Sbjct 39659 TTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTC 39600 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | |||||| ||| || | ||| | || || | || || || | || | || Sbjct 39599 TTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTAATGGT 39540 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| || || || ||||| ||||| |||||||| Sbjct 39539 TTTACCCGTAAGTGTTTTCACAAAGATCTGCAT 39507 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||||||||| |||||||| || || ||||| ||| || ||||| || ||| Sbjct 40615 GTAGACTCTTTTTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCTAGCTGCTTGCCA 40556 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| ||||| || ||||| || || || ||||| || ||| ||| || || Sbjct 40555 GCAAAGATAAGACGTTGTTGATCTGGGGGAATACCCTCTTTATCTTGAATCTTAGCCTTT 40496 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | ||| | |||||| | ||| ||||| | || | || ||||| || || || Sbjct 40495 ACATTTTCAATGGTGTCAGATGGCTCCACCTCCAGAGTTATAGTCTTGCCTGTTAGTGTC 40436 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| || ||||| Sbjct 40435 TTGACAAATATTTGCAT 40419 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATC-G 118568 |||| || || | | ||| || || || | ||||| || |||||||| || ||||| | Sbjct 39963 TACCGCCACGAAGCCGCAATACTAAATGTAGGGTAGATTCCTTTTGAATATTATAATCAG 39904 Query 118569 CTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGA 118628 | || || || ||| || || ||||||||||| | || || | ||| ||||| || Sbjct 39903 ATAAT-GTACGGCCATCTTCTAGTTGTTTTCCAGCAAAAATAAGCCTCTGTTGATCTGGG 39845 Query 118629 GGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCG 118688 || || ||||| |||||| || ||| || || | ||||| ||||| | ||| Sbjct 39844 GGAATACCCTCTTTGTCTTGGATCTTTGCCTTCACATTTTCGATAGTGTCGGACGGCTCT 39785 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| | || | ||||| || || ||||| || ||||| |||||||| Sbjct 39784 ACCTCTAAAGTGATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 39735 >seq3424 Length=494560 Score = 113 bits (124), Expect = 4e-20 Identities = 155/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--A 118583 || ||||||||| | ||||| || |||||||| || ||||| | | |||| ||| | Sbjct 289279 CAGCACCAAGTGCAAAGTAGATTCCTTTTGAATATTATAATC--TGACAGTGTACGTCCA 289222 Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 || || ||||||||||| || | || || | ||| || || ||||| ||||| || ||| Sbjct 289221 TCTTCCAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTG 289162 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 ||| ||||||| ||||| | ||| | || || | ||| || || | || | Sbjct 289161 TCTTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCCTCCACTTCCAATGTGATA 289102 Query 118704 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| ||||| || |||||||| || ||||| Sbjct 289101 GTTTTGCCAGTCAGTGTCTTTACAAATATTTGCAT 289067 Score = 102 bits (112), Expect = 7e-17 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCTCGAGCTGTTTTC 118599 ||||| ||||| ||||||||||||| | |||||| |||| ||| || ||||| |||| Sbjct 289035 GTAGATTCTTTCTGAATGTTGTAAT--CAGATAGTGTGCGTCCATCTTCAAGCTGCTTTC 288978 Query 118600 CAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTT 118659 |||| | || || | |||||||| || || || ||||| || || |||||| || Sbjct 288977 CAGCAAAAATAAGTCTTTGCTGATCTGGGGGAATTCCCTCTTTATCCTGAATTTTCGCTT 288918 Query 118660 TAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAG 118719 |||| | ||| | || || | ||| || || | || | || ||||| ||||| | Sbjct 288917 TAACATTTTCAATTGTATCAGAAGGCTCAACTTCCAAAGTGATAGTCTTGCCAGTCAGTG 288858 Query 118720 TTTTTACAAAAATCTGCAT 118738 | ||||| ||||| ||||| Sbjct 288857 TCTTTACGAAAATTTGCAT 288839 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| || || || | |||||||| || || || || || || || ||||| ||| Sbjct 290419 CAAAACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCCGACAATGTGCGTCCATC 290360 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || || || ||||| ||| | || || | || ||||| ||||| ||||| ||||| || Sbjct 290359 TTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGAATGCCTTCCTTATC 290300 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGT-GCTCTCGACCTCGACGGTCACCG 118704 | ||| ||| ||||| | ||| | || || | ||| || ||||| | || | | Sbjct 290299 TTGAATCTTTGCCTTAACATTTTCTATTGTATCAGAAGCT-TCCACCTCCAAAGTGATAG 290241 Query 118705 TTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| || ||||| || ||||||||||| ||||| Sbjct 290240 TTTTCCCAGTCAGTGTCTTTACAAAAATTTGCAT 290207 Score = 89.7 bits (98), Expect = 4e-13 Identities = 143/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATC-GCTCATAGTGCGCGTATCCTCGAGCTGTTTTCC 118600 ||||| ||||| || || || || || | | || |||||| ||| || || || ||||| Sbjct 290631 GTAGATTCTTTCTGGATATTATAGTCTGATAAT-GTGCGCCCATCTTCCAGTTGCTTTCC 290573 Query 118601 AGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTT 118660 ||| | || || | || ||||| ||||| ||||| ||||| ||| ||| ||| || Sbjct 290572 GGCGAAAATCAGTCTTTGTTGATCTGGAGGAATGCCTTCCTTATCTTGAATCTTTGCCTT 290513 Query 118661 AACCTGTTCGACGGTGTCCGT-GCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAG 118719 ||| | ||| | || || | ||| || || || | || | ||||| || ||||| | Sbjct 290512 AACATTTTCTATTGTATCAGAAGCT-TCCACTTCCAAAGTGATAGTTTTCCCAGTCAGTG 290454 Query 118720 TTTTTACAAAAATCTGCATG 118739 | ||||||||||| |||||| Sbjct 290453 TCTTTACAAAAATTTGCATG 290434 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCT 118587 |||| ||| | || || || || ||||| ||||| || |||||| |||| ||| | Sbjct 289503 ACCAGGTGCAAAGTTGATTCCTTCTGAATATTGTAGTCAG--ATAGTGTGCGTCCATCTT 289446 Query 118588 CGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647 | ||||| |||||||| | || || | |||||||| || || || ||||| || || Sbjct 289445 CAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGAATACCCTCTTTATCCT 289386 Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCGT-GCTCTCGACCTCGACGGTCACCGTT 118706 |||||| ||||| | ||| | || || | ||| || || || | || | || Sbjct 289385 GAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCT-TCCACTTCCAAAGTGATAGTC 289327 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||||| || ||||||||||| ||||| Sbjct 289326 TTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 289295 >seq1305 Length=286731 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||||||||| | || | ||| | || | ||| || || |||||||||||||| || Sbjct 24756 TACCTCCGCGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAG 24815 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || || ||| || || ||||| ||||| |||| | ||| ||||| || || | Sbjct 24816 ACAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGTG 24875 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || ||||| ||| ||||| ||| || | ||| | || || | | ||| | Sbjct 24876 GAATACCTTCCTTATCTTGGATTTTAGCTTTTACATTTTCTATAGTATCGGAGGCCTCCA 24935 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| ||| | ||||| || || || || || || ||||| ||||| Sbjct 24936 CCTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCAT 24984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433807616989828