Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20
2012-03-01] 4,309 sequences; 273,786,188 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq3463 168 6e-37
seq2787 116 3e-21
seq3424 113 4e-20
seq1305 102 7e-17
>seq3463
Length=282612
Score = 168 bits (186), Expect = 6e-37
Identities = 347/510 (68%), Gaps = 12/510 (2%)
Strand=Plus/Minus
Query 21569 AAAATCGTGGCGGCCTACTTTGTCGAATGGGGAGTGTACCTGAGACAGTTCCCCGTCGAC 21628
||| | |||| |||||||| || |||||||| || || | || | |||||||| ||
Sbjct 183021 AAAGTTGTGGGTGCCTACTTCGTAGAATGGGGTGTCTATCCTAGGAAATTCCCCGTGGAT 182962
Query 21629 AAGGTGCCGGCGCCGAATCTATCACATATACTATACGGCTTCGTGCCGATATGCGGAGGC 21688
| || || ||||| | ||| | || |||||||| | || || ||||| ||
Sbjct 182961 CGTATACCTATACCTAATCTTACTCATTTGCTCTACGGCTTTATCCCAATTTGCGGCGGT 182902
Query 21689 GACGGCATCAACGACGCGCTAAAAACGGTGCCTGGCAGTTTTGAGGCATTGCAACGTTCG 21748
||||||||||| || ||||| | | |||||||| | ||| | || || ||
Sbjct 182901 GACGGCATCAATGATAGTTTAAAAGAGATCGAAGGCAGTTTCCAAGCACTACAGCGGTCC 182842
Query 21749 TGTGCGGGTCGGGCCGATTTCAAGGTGGCTATACACGATCCGTGGGCCGCAATACAAAAG 21808
||| || || | || ||||| || | || |||||||| ||||| ||| |||||||
Sbjct 182841 TGTAGCGGCCGTGAGGACTTCAAAGTCTCAATCCACGATCCATGGGCAGCATTACAAAAA 182782
Query 21809 CCCCAAAAGGGCGTCTCGTCATGGAACGAACCGTACAAAGGCAACTTTGGTCAACTGATG 21868
|| ||||| || | || ||||||||||| || ||||||||||||||||| ||| | |||
Sbjct 182781 CCACAAAAAGGATTGTCTTCATGGAACGAGCCTTACAAAGGCAACTTTGGCCAATTAATG 182722
Query 21869 GCAATGAAGAGGGCCAATCCTCACATTAAAG--TGTTCGCATCGATCGGCGGATGGACTC 21926
|| | || ||| ||| | ||| ||| | ||| | || || || || ||||| |
Sbjct 182721 TCACTAAAACAAGCCCGCCCTGA-ATTGAAGATTCTTC-CCTCTATTGGTGGGTGGACGC 182664
Query 21927 TGTCCGATCCATT----TTATCATATGCACGACGCCGACGTCAGACGGGTGTTTATCGAT 21982
| ||||||| || || | | || || | | | | ||| ||| | |
Sbjct 182663 TTGCCGATCCTTTCTTCTTTTTAGTTG-ACAAATCTAAGAGAACACG---ATTTGTGCAG 182608
Query 21983 TCAGTTGAAGAATTTCTGCTCACGTGGAAGTTCTATGACGGCGTCCACATCGATTGGGAG 22042
||||| | || ||||| || || ||||| |||| || || || | ||||||||||||
Sbjct 182607 TCAGTAAAGGAGTTTCTTCTAACATGGAAATTCTTCGATGGTGTTGATATCGATTGGGAG 182548
Query 22043 TTTCCCGGCGGCAAGGGAGCCAACCCCGAC 22072
|| || || ||||| || || ||||| |||
Sbjct 182547 TTCCCTGGTGGCAAAGGTGCTAACCCTGAC 182518
>seq2787
Length=76071
Score = 116 bits (128), Expect = 3e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
||||| |||||||| ||||| || || || |||||| |||||| | |||||| |||
Sbjct 41527 GTAGATTCTTTTTGGATGTTATAGTCCGACAGAGTGCGGCCATCCTCTAACTGTTTACCA 41468
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
|| ||||||||||||| || || || || ||||||||||| ||| || || |||
Sbjct 41467 GCAAAGATGAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTATCTTGGATCTTAGCCTTA 41408
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | ||||| ||||| | ||| ||||| | || | || || || || |||||
Sbjct 41407 ACATTTTCGATAGTGTCGGATGGCTCCACCTCCAAAGTGATGGTCTTCCCAGTAAGAGTC 41348
Query 118722 TTTACAAAAATCTGCAT 118738
|| ||||| ||||||||
Sbjct 41347 TTAACAAAGATCTGCAT 41331
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|||||||| || || |||||||| || || ||||| ||| || | || || |||
Sbjct 40387 GTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAATTGCTTACCA 40328
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
|| |||| |||||||||||||| || || |||||||| |||||| ||||| |||
Sbjct 40327 GCAAAGATAAGACGCTGCTGATCAGGTGGGATGCCCTCTTTGTCTTGGATTTTAGCTTTT 40268
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | ||| | || || | | || || || | ||| | || || || || || |||
Sbjct 40267 ACATTTTCAATAGTATCAGAGGGTTCCACTTCCAGGGTAATGGTCTTTCCAGTTAGGGTT 40208
Query 118722 TTTACAAAAATCTGCAT 118738
|| ||||||||||||||
Sbjct 40207 TTAACAAAAATCTGCAT 40191
Score = 102 bits (112), Expect = 7e-17
Identities = 153/212 (72%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||| ||||| | || |||||||| ||||| |||||||| || |||||| ||| ||
Sbjct 40856 CACTAAGTGCAGGGTTGACTCTTTCTGAATATTGTAATCAGACAAAGTGCGACCATCTTC 40797
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTG 118647
| || |||||||| | |||||||| || || || || || ||||||||||| | |||
Sbjct 40796 CAATTGCTTTCCAGCAAAAATGAGACGTTGTTGGTCTGGGGGGATGCCCTCCTTATCCTG 40737
Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTT 118706
| ||||| ||| || | |||| ||||| | || | || || || | ||| | ||
Sbjct 40736 T-ATTTTAGCTTTGACATTCTCGATTGTGTCAGATGGT-TCTACTTCCAGGGTAATGGTC 40679
Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| || |||| ||||| ||||| || |||||
Sbjct 40678 TTTCCAGTCAATGTTTTGACAAATATTTGCAT 40647
Score = 100 bits (110), Expect = 2e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585
||| |||||||| | ||||| ||||||||||| || || || | |||||| ||
Sbjct 39719 CAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGAAAGAGTGCGTCCGTC 39660
Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
|| | || ||||||||| | || | ||| || ||||| ||||| ||||| ||||||||
Sbjct 39659 TTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCCTTGTC 39600
Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705
| |||||| ||| || | ||| | || || | || || || | || | ||
Sbjct 39599 TTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAACTTCCAAAGTAATGGT 39540
Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||| || || || ||||| ||||| ||||||||
Sbjct 39539 TTTACCCGTAAGTGTTTTCACAAAGATCTGCAT 39507
Score = 98.7 bits (108), Expect = 9e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|||||||||||||| |||||||| || || ||||| ||| || ||||| || |||
Sbjct 40615 GTAGACTCTTTTTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCTAGCTGCTTGCCA 40556
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
|| |||| ||||| || ||||| || || || ||||| || ||| ||| || ||
Sbjct 40555 GCAAAGATAAGACGTTGTTGATCTGGGGGAATACCCTCTTTATCTTGAATCTTAGCCTTT 40496
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | ||| | |||||| | ||| ||||| | || | || ||||| || || ||
Sbjct 40495 ACATTTTCAATGGTGTCAGATGGCTCCACCTCCAGAGTTATAGTCTTGCCTGTTAGTGTC 40436
Query 118722 TTTACAAAAATCTGCAT 118738
|| ||||| || |||||
Sbjct 40435 TTGACAAATATTTGCAT 40419
Score = 96.9 bits (106), Expect = 3e-15
Identities = 161/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATC-G 118568
|||| || || | | ||| || || || | ||||| || |||||||| || ||||| |
Sbjct 39963 TACCGCCACGAAGCCGCAATACTAAATGTAGGGTAGATTCCTTTTGAATATTATAATCAG 39904
Query 118569 CTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGA 118628
| || || || ||| || || ||||||||||| | || || | ||| ||||| ||
Sbjct 39903 ATAAT-GTACGGCCATCTTCTAGTTGTTTTCCAGCAAAAATAAGCCTCTGTTGATCTGGG 39845
Query 118629 GGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCG 118688
|| || ||||| |||||| || ||| || || | ||||| ||||| | |||
Sbjct 39844 GGAATACCCTCTTTGTCTTGGATCTTTGCCTTCACATTTTCGATAGTGTCGGACGGCTCT 39785
Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| | || | ||||| || || ||||| || ||||| ||||||||
Sbjct 39784 ACCTCTAAAGTGATGGTTTTTCCTGTAAGAGTCTTAACAAAGATCTGCAT 39735
>seq3424
Length=494560
Score = 113 bits (124), Expect = 4e-20
Identities = 155/215 (72%), Gaps = 4/215 (2%)
Strand=Plus/Minus
Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--A 118583
|| ||||||||| | ||||| || |||||||| || ||||| | | |||| ||| |
Sbjct 289279 CAGCACCAAGTGCAAAGTAGATTCCTTTTGAATATTATAATC--TGACAGTGTACGTCCA 289222
Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643
|| || ||||||||||| || | || || | ||| || || ||||| ||||| || |||
Sbjct 289221 TCTTCCAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAGGAGGAATGCCTTCTTTG 289162
Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703
||| ||||||| ||||| | ||| | || || | ||| || || | || |
Sbjct 289161 TCTTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCCTCCACTTCCAATGTGATA 289102
Query 118704 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|||||||| ||||| || |||||||| || |||||
Sbjct 289101 GTTTTGCCAGTCAGTGTCTTTACAAATATTTGCAT 289067
Score = 102 bits (112), Expect = 7e-17
Identities = 143/199 (72%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCTCGAGCTGTTTTC 118599
||||| ||||| ||||||||||||| | |||||| |||| ||| || ||||| ||||
Sbjct 289035 GTAGATTCTTTCTGAATGTTGTAAT--CAGATAGTGTGCGTCCATCTTCAAGCTGCTTTC 288978
Query 118600 CAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTT 118659
|||| | || || | |||||||| || || || ||||| || || |||||| ||
Sbjct 288977 CAGCAAAAATAAGTCTTTGCTGATCTGGGGGAATTCCCTCTTTATCCTGAATTTTCGCTT 288918
Query 118660 TAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAG 118719
|||| | ||| | || || | ||| || || | || | || ||||| ||||| |
Sbjct 288917 TAACATTTTCAATTGTATCAGAAGGCTCAACTTCCAAAGTGATAGTCTTGCCAGTCAGTG 288858
Query 118720 TTTTTACAAAAATCTGCAT 118738
| ||||| ||||| |||||
Sbjct 288857 TCTTTACGAAAATTTGCAT 288839
Score = 91.5 bits (100), Expect = 1e-13
Identities = 150/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585
||| || || || | |||||||| || || || || || || || ||||| |||
Sbjct 290419 CAAAACTAAATGCAAAGTAGACTCCTTCTGGATATTATAGTCCGACAATGTGCGTCCATC 290360
Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
|| || || ||||| ||| | || || | || ||||| ||||| ||||| ||||| ||
Sbjct 290359 TTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGAATGCCTTCCTTATC 290300
Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGT-GCTCTCGACCTCGACGGTCACCG 118704
| ||| ||| ||||| | ||| | || || | ||| || ||||| | || | |
Sbjct 290299 TTGAATCTTTGCCTTAACATTTTCTATTGTATCAGAAGCT-TCCACCTCCAAAGTGATAG 290241
Query 118705 TTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|||| || ||||| || ||||||||||| |||||
Sbjct 290240 TTTTCCCAGTCAGTGTCTTTACAAAAATTTGCAT 290207
Score = 89.7 bits (98), Expect = 4e-13
Identities = 143/200 (72%), Gaps = 4/200 (2%)
Strand=Plus/Minus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATC-GCTCATAGTGCGCGTATCCTCGAGCTGTTTTCC 118600
||||| ||||| || || || || || | | || |||||| ||| || || || |||||
Sbjct 290631 GTAGATTCTTTCTGGATATTATAGTCTGATAAT-GTGCGCCCATCTTCCAGTTGCTTTCC 290573
Query 118601 AGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTT 118660
||| | || || | || ||||| ||||| ||||| ||||| ||| ||| ||| ||
Sbjct 290572 GGCGAAAATCAGTCTTTGTTGATCTGGAGGAATGCCTTCCTTATCTTGAATCTTTGCCTT 290513
Query 118661 AACCTGTTCGACGGTGTCCGT-GCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAG 118719
||| | ||| | || || | ||| || || || | || | ||||| || ||||| |
Sbjct 290512 AACATTTTCTATTGTATCAGAAGCT-TCCACTTCCAAAGTGATAGTTTTCCCAGTCAGTG 290454
Query 118720 TTTTTACAAAAATCTGCATG 118739
| ||||||||||| ||||||
Sbjct 290453 TCTTTACAAAAATTTGCATG 290434
Score = 86.0 bits (94), Expect = 5e-12
Identities = 149/212 (70%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCT 118587
|||| ||| | || || || || ||||| ||||| || |||||| |||| ||| |
Sbjct 289503 ACCAGGTGCAAAGTTGATTCCTTCTGAATATTGTAGTCAG--ATAGTGTGCGTCCATCTT 289446
Query 118588 CGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647
| ||||| |||||||| | || || | |||||||| || || || ||||| || ||
Sbjct 289445 CAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGGGAATACCCTCTTTATCCT 289386
Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCGT-GCTCTCGACCTCGACGGTCACCGTT 118706
|||||| ||||| | ||| | || || | ||| || || || | || | ||
Sbjct 289385 GAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCT-TCCACTTCCAAAGTGATAGTC 289327
Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| ||||| || ||||||||||| |||||
Sbjct 289326 TTGCCAGTCAGTGTCTTTACAAAAATTTGCAT 289295
>seq1305
Length=286731
Score = 102 bits (112), Expect = 7e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||||||||| | || | ||| | || | ||| || || |||||||||||||| ||
Sbjct 24756 TACCTCCGCGAAGTCGAAGCACAAGATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAG 24815
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
|| || || ||| || || ||||| ||||| |||| | ||| ||||| || || |
Sbjct 24816 ACAATGTACGTCCATCTTCTAGTTGTTTACCAGCAAAGATCAAACGTTGCTGGTCTGGTG 24875
Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689
| || || ||||| ||| ||||| ||| || | ||| | || || | | ||| |
Sbjct 24876 GAATACCTTCCTTATCTTGGATTTTAGCTTTTACATTTTCTATAGTATCGGAGGCCTCCA 24935
Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|||||| ||| | ||||| || || || || || || ||||| |||||
Sbjct 24936 CCTCGAGGGTAATGGTTTTACCCGTAAGGGTCTTGACGAAAATTTGCAT 24984
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433807616989828
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