Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq3341 107 4e-18 seq4254 100 5e-16 >seq3341 Length=242222 Score = 107 bits (118), Expect = 4e-18 Identities = 160/218 (73%), Gaps = 8/218 (4%) Strand=Plus/Plus Query 135727 GGTATATGCGATAATTTACTGACGTCTATTGTAAGAGCCTGGGA-TACAAACAAACCACT 135785 |||||||| || |||||| |||| | || || |||| ||||| | | | || ||||| Sbjct 79007 GGTATATGTGACAATTTATTGACATGTACAGTCCGAGCGTGGGACTTCTCA-AAGCCACT 79065 Query 135786 CATTTTCTGTCCTGCAATGAATACTCTTATGTGGGAACATCCTATTACAGAAAAACATAT 135845 | ||||||||||||||||| ||| ||||||||||||||||||||| ||||| || Sbjct 79066 TGTATTCTGTCCTGCAATGAACACTAGAATGTGGGAACATCCTATTACATCTAAACAAAT 79125 Query 135846 AGATACGTTAAAATATATGGG-TTTCATAGAAATAGAATGCATAGaaaaaaaaC--TAGC 135902 |||| ||||| || ||| ||||| |||||| | || | || ||||| || Sbjct 79126 AGATGTTTTAAAGGATTGGGGCTTTCA-AGAAAT-TCCTCCA-ATAAGTAAAACTTTAAT 79182 Query 135903 ATGTGGAGACGTAGGAAATGGTGCTATGGCAGAAGTTG 135940 |||||||| ||| ||||| ||||||||||||| Sbjct 79183 GTGTGGAGATACAGGTGTTGGTGGAATGGCAGAAGTTG 79220 >seq4254 Length=614577 Score = 100 bits (110), Expect = 5e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 188846 CAAGTAGACGCTCATAATATAGTACCTTGTTGGGAAGCTTCTGATAAAGAAGAATACGGT 188905 || ||||| ||||| ||| | || || ||||||| |||||||||||| | ||||| Sbjct 227669 CAGGTAGATGCTCACAATGTGGTGCCATGTTGGGTGGCTTCTGATAAACAGGAATATTCA 227728 Query 188906 GCACGAACTTTAAGAAAAAAGATATTTGATAAATTATATGAATATATGACAGAATTTCCT 188965 ||| |||| ||||||| || || | ||||||| |||||||| | |||||||||||| Sbjct 227729 GCAAGAACAATAAGAAATAAAATCAATTCTAAATTAGATGAATATCTCACAGAATTTCCT 227788 Query 188966 GTTGTTCGTAAACATCCATA 188985 ||| ||||||||| || Sbjct 227789 CCAGTTATTAAACATCCTTA 227808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923147074312360