Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq1386 131 2e-25 seq2787 120 5e-22 seq3424 114 2e-20 seq3386 107 3e-18 seq4254 86.0 9e-12 >seq1386 Length=428454 Score = 131 bits (144), Expect = 2e-25 Identities = 146/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 10499 AGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTATTTAATCATTC 10558 |||||| || || || ||||| || | ||||| | ||||| | ||||| |||||||| Sbjct 422228 AGCTGGTGTCATAGATGAAGACTACCGTGGAAACATTGGAGTGGTGTTATTCAATCATTC 422169 Query 10559 TAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATATGTGAAAAAAT 10618 | |||||||||| | | || | ||| |||||||| ||||| |||||||||||| ||| Sbjct 422168 CAGTGAAGATTTTGCAGTTAAAAAAGGTGATAGAATTGCTCAACTAATATGTGAAAGAAT 422109 Query 10619 TTTATATCCTAAAATGTTAAAAGTCGATAGTTTATCAGAAACAAAAAGATCTGATTTTGG 10678 ||| || || | || | |||| || | | ||||||||||||||||| || ||| Sbjct 422108 TTTCTACCCAGATATAGTTGAAGTTGACAATCTATCAGAAACAAAAAGAGGGGAAGGTGG 422049 Query 10679 TTTTGGATCTACTGG 10693 |||||| ||||| || Sbjct 422048 TTTTGGGTCTACAGG 422034 >seq2787 Length=76071 Score = 120 bits (132), Expect = 5e-22 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | ||| | |||||||| || | |||||||||||| |||||||| || | Sbjct 39735 TTCCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAG 39676 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||||||| | | || || ||||| |||||||| |||||||| | ||| ||||| |||| Sbjct 39675 AAAGAGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAG 39616 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 |||| ||||| || ||||| |||||| ||| ||| | Sbjct 39615 GAATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAA 39556 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTT 146280 |||| | || || |||||||| || | |||||| | || || |||||||| Sbjct 39555 CTTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTT 39504 Score = 102 bits (112), Expect = 1e-16 Identities = 98/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 146066 AATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATC 146124 ||||| ||||||| |||||||| ||| || ||||||||||| || | || | || ||| Sbjct 39946 AATACTAAATGTAGGGTAGATTCCTTTTGA-ATATTATAATCAGATAATGTACGGCCATC 39888 Query 146125 ATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATC 146184 |||| |||||||||||||||||| | || || ||||| || ||||| || ||||| || Sbjct 39887 TTCTAGTTGTTTTCCAGCAAAAATAAGCCTCTGTTGATCTGGGGGAATACCCTCTTTGTC 39828 Query 146185 TTG 146187 ||| Sbjct 39827 TTG 39825 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/227 (67%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | | | ||| || || |||||||||||||| || || || || || Sbjct 40189 CCACCTCTTAAACGAAGTACTAAGTGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGAC 40130 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| |||||||| || || |||||||| | | ||| |||||||||||| Sbjct 40129 AGTGTACGACCATCTTCTAATTGCTTGCCCGCAAAAATAAGACGTTGTTGATCCGGAGGA 40070 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||| ||||| || || ||| ||| ||| Sbjct 40069 ATGCCTTCTTTGTCTTGGATTTTAGCTTTCACATTTTCAATTGTGTCAGAAGCTTCAACT 40010 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| || |||||||| || || | |||||||| || |||||||| Sbjct 40009 TCTAAAGTAATTGTTTTTCCAGTGAGTGTTTTAACAAAGATTTGCAT 39963 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | | ||| ||||| |||||||||||||| || ||||| || || Sbjct 41557 CCACCACGAAGACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTATAGTCCGAC 41498 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | || ||| ||||| ||||| |||||||| || | | || || || || ||| Sbjct 41497 AGAGTGCGGCCATCCTCTAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGA 41438 Query 146171 ATTCCTTCTTTATCTTG 146187 || || || |||||||| Sbjct 41437 ATGCCCTCCTTATCTTG 41421 >seq3424 Length=494560 Score = 114 bits (126), Expect = 2e-20 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| || || | ||| || || || ||||||||||| || |||||||| |||| Sbjct 288839 TTCCACCCCTTAGACGTAAAACTAAGTGCAAAGTAGATTCCTTCTGGATATTATAGTCTG 288780 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || || | | ||| || ||||| ||||| || ||||| | |||||| ||||| |||| Sbjct 288779 AGAGTGTGCGCCCATCTTCCAATTGCTTTCCGGCGAAAATTAGTCTTTGTTGATCTGGAG 288720 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 | || ||||| || ||||| ||||| ||| ||| | Sbjct 288719 GGATGCCTTCCTTGTCTTGAATCTTTGCCTTTACGTTTTCGATTGTATCAGAAGCTTCCA 288660 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| | |||||| ||||| || ||||| ||||| | ||| |||||||| Sbjct 288659 CTTCCAATGTGATGGTTTTCCCAGTTAAAGTTTTTACGAAGATTTGCAT 288611 Score = 113 bits (124), Expect = 7e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| || | | ||| |||||||||||||||||||| ||||| || ||||| Sbjct 289977 CCACCTCTCAGACGAAGTACTAAATGTAAAGTAGATTCTTTCTGAATATTGTAGTCTGAT 289918 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| || | ||| |||||||||||||| | ||||| || || |||||| Sbjct 289917 AGTGTACGTCCATCCTCAAGTTGCTTTCCAGCAAAAATAAGCCTTTGTTGGTCTGGAGGA 289858 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| |||||||| Sbjct 289857 ATGCCTTCCTTATCTTG 289841 Score = 107 bits (118), Expect = 3e-18 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| || | || ||| | || |||||||||||||| || || ||||| | Sbjct 289067 TTCCACCTCTCAGCCGTAGTACTAGGTGCAAAGTAGATTCTTTCTGAATGTTGTAATCAG 289008 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || || | | ||| || | || |||||||||||||| | |||||||||||| || | Sbjct 289007 ATAGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGG 288948 Query 146169 GAATTCCTTCTTTATCTTG 146187 ||||||| |||||||| || Sbjct 288947 GAATTCCCTCTTTATCCTG 288929 Score = 107 bits (118), Expect = 3e-18 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107 ||||||| ||||| | | ||||| || ||||||||||| ||| || |||||||||||| Sbjct 289295 TTCCACCCCTAAGGCGCAGCACCAAGTGCAAAGTAGATTCCTTTTGA-ATATTATAATCT 289237 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 || || || | | ||| || | |||||||| |||||||| | || || || || ||| Sbjct 289236 GACAGTGTACGTCCATCTTCCAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAGGA 289177 Query 146168 GGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCT 146227 ||||| |||||||| ||||| ||||| ||| || Sbjct 289176 GGAATGCCTTCTTTGTCTTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCCTCC 289117 Query 146228 ACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 ||||| | |||||| ||||| || || | ||| || | |||||||||||| Sbjct 289116 ACTTCCAATGTGATAGTTTTGCCAGTCAGTGTCTTTACAAATATTTGCATT 289066 Score = 104 bits (114), Expect = 3e-17 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| || | | ||||| ||| ||||||||||| || ||||| || || | Sbjct 289751 TTCCACCTCTCAGCCGCAGTACCAGATGCAAAGTAGATTCCTTCTGAATATTGTAGTCAG 289692 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || || | | ||| || | || |||||||||||||| | |||||||||||| || | Sbjct 289691 ATAGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGG 289632 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 |||| || |||||||| || ||||| ||| ||| | Sbjct 289631 GAATGCCCTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCTTCCA 289572 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 |||| | |||||| || || || || | ||| || | |||||||||||| Sbjct 289571 CTTCCAATGTGATAGTCTTGCCAGTCAGTGTCTTTACAAATATTTGCATT 289522 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||||||||| | || | || | ||||||||||| |||||||| ||||| Sbjct 290661 CCACCTCTAAGTCTGAGAACAAGGTGAAGGGTAGATTCTTTCTGGATATTATAGTCTGAT 290602 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| || | ||| ||||| || ||||||| |||||| ||||| |||||| Sbjct 290601 AATGTGCGCCCATCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGA 290542 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| |||||||| Sbjct 290541 ATGCCTTCCTTATCTTG 290525 Score = 93.3 bits (102), Expect = 6e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| || | | ||||| || ||||| ||||| || ||||| || || | Sbjct 289523 TTCCACCTCTCAGCCGCAGTACCAGGTGCAAAGTTGATTCCTTCTGAATATTGTAGTCAG 289464 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || || | | ||| || | || |||||||||||||| | |||||||||||| || | Sbjct 289463 ATAGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGG 289404 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| || |||||||| || Sbjct 289403 GAATACCCTCTTTATCCTG 289385 >seq3386 Length=83803 Score = 107 bits (118), Expect = 3e-18 Identities = 121/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 10499 AGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTATTTAATCATTC 10558 |||||| || || || ||||| || | ||||| | ||||| | ||||| |||||||| Sbjct 162 AGCTGGTGTCATAGATGAAGACTACCGTGGAAACATTGGAGTGGTGTTATTCAATCATTC 103 Query 10559 TAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATATGTGAAAAAAT 10618 | |||||||||| | | || | ||| |||||||| ||||| |||||||||||| ||| Sbjct 102 CAGTGAAGATTTTGCAGTTAAAAAAGGTGATAGAATTGCTCAACTAATATGTGAAAGAAT 43 Query 10619 TTTATATCCTAAAATGTTAAAAGTCGATAGTTTATCAGAAAC 10660 ||| || || | || | |||| || | | |||||||||| Sbjct 42 TTTCTACCCAGATATAGTTGAAGTTGACAATCTATCAGAAAC 1 >seq4254 Length=614577 Score = 86.0 bits (94), Expect = 9e-12 Identities = 96/127 (76%), Gaps = 6/127 (5%) Strand=Plus/Plus Query 27418 GTAGATTCTCATAATATTATACCAGTATGGGTAACTTCAGATAAACAGGAATATAACGCA 27477 |||||| |||| ||| | | ||| ||||| |||| ||||||||||||||| ||| Sbjct 227672 GTAGATGCTCACAATGTGGTGCCATGTTGGGTGGCTTCTGATAAACAGGAATATTCAGCA 227731 Query 27478 AGAACAATAAGGATTAAAATAAA---TAAATTAAAAGATCAATATTTAATCGAATTTCCT 27534 ||||||||||| | |||||| || |||||| |||| ||||| | | ||||||||| Sbjct 227732 AGAACAATAAGAAATAAAATCAATTCTAAATT---AGATGAATATCTCACAGAATTTCCT 227788 Query 27535 AAAGTTA 27541 ||||| Sbjct 227789 CCAGTTA 227795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743486351809280