Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20
2012-03-01] 4,309 sequences; 273,786,188 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq1386 131 2e-25
seq2787 120 5e-22
seq3424 114 2e-20
seq3386 107 3e-18
seq4254 86.0 9e-12
>seq1386
Length=428454
Score = 131 bits (144), Expect = 2e-25
Identities = 146/195 (75%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 10499 AGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTATTTAATCATTC 10558
|||||| || || || ||||| || | ||||| | ||||| | ||||| ||||||||
Sbjct 422228 AGCTGGTGTCATAGATGAAGACTACCGTGGAAACATTGGAGTGGTGTTATTCAATCATTC 422169
Query 10559 TAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATATGTGAAAAAAT 10618
| |||||||||| | | || | ||| |||||||| ||||| |||||||||||| |||
Sbjct 422168 CAGTGAAGATTTTGCAGTTAAAAAAGGTGATAGAATTGCTCAACTAATATGTGAAAGAAT 422109
Query 10619 TTTATATCCTAAAATGTTAAAAGTCGATAGTTTATCAGAAACAAAAAGATCTGATTTTGG 10678
||| || || | || | |||| || | | ||||||||||||||||| || |||
Sbjct 422108 TTTCTACCCAGATATAGTTGAAGTTGACAATCTATCAGAAACAAAAAGAGGGGAAGGTGG 422049
Query 10679 TTTTGGATCTACTGG 10693
|||||| ||||| ||
Sbjct 422048 TTTTGGGTCTACAGG 422034
>seq2787
Length=76071
Score = 120 bits (132), Expect = 5e-22
Identities = 161/232 (69%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108
||||||| | ||| | |||||||| || | |||||||||||| |||||||| || |
Sbjct 39735 TTCCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAG 39676
Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168
||||||| | | || || ||||| |||||||| |||||||| | ||| ||||| ||||
Sbjct 39675 AAAGAGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAG 39616
Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228
|||| ||||| || ||||| |||||| ||| ||| |
Sbjct 39615 GAATGCCTTCCTTGTCTTGAATTTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAA 39556
Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTT 146280
|||| | || || |||||||| || | |||||| | || || ||||||||
Sbjct 39555 CTTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCATTTT 39504
Score = 102 bits (112), Expect = 1e-16
Identities = 98/123 (80%), Gaps = 2/123 (2%)
Strand=Plus/Minus
Query 146066 AATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATC 146124
||||| ||||||| |||||||| ||| || ||||||||||| || | || | || |||
Sbjct 39946 AATACTAAATGTAGGGTAGATTCCTTTTGA-ATATTATAATCAGATAATGTACGGCCATC 39888
Query 146125 ATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATC 146184
|||| |||||||||||||||||| | || || ||||| || ||||| || ||||| ||
Sbjct 39887 TTCTAGTTGTTTTCCAGCAAAAATAAGCCTCTGTTGATCTGGGGGAATACCCTCTTTGTC 39828
Query 146185 TTG 146187
|||
Sbjct 39827 TTG 39825
Score = 98.7 bits (108), Expect = 1e-15
Identities = 153/227 (67%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|||||||| | | | ||| || || |||||||||||||| || || || || ||
Sbjct 40189 CCACCTCTTAAACGAAGTACTAAGTGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGAC 40130
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|| || | | ||| |||||||| || || |||||||| | | ||| ||||||||||||
Sbjct 40129 AGTGTACGACCATCTTCTAATTGCTTGCCCGCAAAAATAAGACGTTGTTGATCCGGAGGA 40070
Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230
|| |||||||| ||||| || || ||| ||| |||
Sbjct 40069 ATGCCTTCTTTGTCTTGGATTTTAGCTTTCACATTTTCAATTGTGTCAGAAGCTTCAACT 40010
Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277
|||| || |||||||| || || | |||||||| || ||||||||
Sbjct 40009 TCTAAAGTAATTGTTTTTCCAGTGAGTGTTTTAACAAAGATTTGCAT 39963
Score = 89.7 bits (98), Expect = 8e-13
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
||||| | ||| | | ||| ||||| |||||||||||||| || ||||| || ||
Sbjct 41557 CCACCACGAAGACGAAGTACTAAATGCAAAGTAGATTCTTTTTGGATGTTATAGTCCGAC 41498
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
||||| | || ||| ||||| ||||| |||||||| || | | || || || || |||
Sbjct 41497 AGAGTGCGGCCATCCTCTAACTGTTTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGA 41438
Query 146171 ATTCCTTCTTTATCTTG 146187
|| || || ||||||||
Sbjct 41437 ATGCCCTCCTTATCTTG 41421
>seq3424
Length=494560
Score = 114 bits (126), Expect = 2e-20
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108
||||||| || || | ||| || || || ||||||||||| || |||||||| ||||
Sbjct 288839 TTCCACCCCTTAGACGTAAAACTAAGTGCAAAGTAGATTCCTTCTGGATATTATAGTCTG 288780
Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168
| || || | | ||| || ||||| ||||| || ||||| | |||||| ||||| ||||
Sbjct 288779 AGAGTGTGCGCCCATCTTCCAATTGCTTTCCGGCGAAAATTAGTCTTTGTTGATCTGGAG 288720
Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228
| || ||||| || ||||| ||||| ||| ||| |
Sbjct 288719 GGATGCCTTCCTTGTCTTGAATCTTTGCCTTTACGTTTTCGATTGTATCAGAAGCTTCCA 288660
Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277
|||| | |||||| ||||| || ||||| ||||| | ||| ||||||||
Sbjct 288659 CTTCCAATGTGATGGTTTTCCCAGTTAAAGTTTTTACGAAGATTTGCAT 288611
Score = 113 bits (124), Expect = 7e-20
Identities = 107/137 (78%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|||||||| || | | ||| |||||||||||||||||||| ||||| || |||||
Sbjct 289977 CCACCTCTCAGACGAAGTACTAAATGTAAAGTAGATTCTTTCTGAATATTGTAGTCTGAT 289918
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|| || | | ||| || | ||| |||||||||||||| | ||||| || || ||||||
Sbjct 289917 AGTGTACGTCCATCCTCAAGTTGCTTTCCAGCAAAAATAAGCCTTTGTTGGTCTGGAGGA 289858
Query 146171 ATTCCTTCTTTATCTTG 146187
|| ||||| ||||||||
Sbjct 289857 ATGCCTTCCTTATCTTG 289841
Score = 107 bits (118), Expect = 3e-18
Identities = 107/139 (77%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108
|||||||||| || | || ||| | || |||||||||||||| || || ||||| |
Sbjct 289067 TTCCACCTCTCAGCCGTAGTACTAGGTGCAAAGTAGATTCTTTCTGAATGTTGTAATCAG 289008
Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168
| || || | | ||| || | || |||||||||||||| | |||||||||||| || |
Sbjct 289007 ATAGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGG 288948
Query 146169 GAATTCCTTCTTTATCTTG 146187
||||||| |||||||| ||
Sbjct 288947 GAATTCCCTCTTTATCCTG 288929
Score = 107 bits (118), Expect = 3e-18
Identities = 159/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107
||||||| ||||| | | ||||| || ||||||||||| ||| || ||||||||||||
Sbjct 289295 TTCCACCCCTAAGGCGCAGCACCAAGTGCAAAGTAGATTCCTTTTGA-ATATTATAATCT 289237
Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167
|| || || | | ||| || | |||||||| |||||||| | || || || || |||
Sbjct 289236 GACAGTGTACGTCCATCTTCCAGCTGTTTTCCTGCAAAAATAAGCCTCTGTTGGTCAGGA 289177
Query 146168 GGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCT 146227
||||| |||||||| ||||| ||||| ||| ||
Sbjct 289176 GGAATGCCTTCTTTGTCTTGAATTTTTGCCTTAACATTTTCTATTGTATCAGAAGCCTCC 289117
Query 146228 ACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278
||||| | |||||| ||||| || || | ||| || | ||||||||||||
Sbjct 289116 ACTTCCAATGTGATAGTTTTGCCAGTCAGTGTCTTTACAAATATTTGCATT 289066
Score = 104 bits (114), Expect = 3e-17
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108
|||||||||| || | | ||||| ||| ||||||||||| || ||||| || || |
Sbjct 289751 TTCCACCTCTCAGCCGCAGTACCAGATGCAAAGTAGATTCCTTCTGAATATTGTAGTCAG 289692
Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168
| || || | | ||| || | || |||||||||||||| | |||||||||||| || |
Sbjct 289691 ATAGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGG 289632
Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228
|||| || |||||||| || ||||| ||| ||| |
Sbjct 289631 GAATGCCCTCTTTATCCTGAATTTTCGCCTTAACATTTTCAATTGTATCAGAAGCTTCCA 289572
Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278
|||| | |||||| || || || || | ||| || | ||||||||||||
Sbjct 289571 CTTCCAATGTGATAGTCTTGCCAGTCAGTGTCTTTACAAATATTTGCATT 289522
Score = 104 bits (114), Expect = 3e-17
Identities = 105/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|||||||||||||| | || | || | ||||||||||| |||||||| |||||
Sbjct 290661 CCACCTCTAAGTCTGAGAACAAGGTGAAGGGTAGATTCTTTCTGGATATTATAGTCTGAT 290602
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
| || | | ||| || | ||| ||||| || ||||||| |||||| ||||| ||||||
Sbjct 290601 AATGTGCGCCCATCTTCCAGTTGCTTTCCGGCGAAAATCAGTCTTTGTTGATCTGGAGGA 290542
Query 146171 ATTCCTTCTTTATCTTG 146187
|| ||||| ||||||||
Sbjct 290541 ATGCCTTCCTTATCTTG 290525
Score = 93.3 bits (102), Expect = 6e-14
Identities = 104/139 (75%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108
|||||||||| || | | ||||| || ||||| ||||| || ||||| || || |
Sbjct 289523 TTCCACCTCTCAGCCGCAGTACCAGGTGCAAAGTTGATTCCTTCTGAATATTGTAGTCAG 289464
Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168
| || || | | ||| || | || |||||||||||||| | |||||||||||| || |
Sbjct 289463 ATAGTGTGCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGTCTTTGCTGATCTGGGG 289404
Query 146169 GAATTCCTTCTTTATCTTG 146187
|||| || |||||||| ||
Sbjct 289403 GAATACCCTCTTTATCCTG 289385
>seq3386
Length=83803
Score = 107 bits (118), Expect = 3e-18
Identities = 121/162 (75%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 10499 AGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTATTTAATCATTC 10558
|||||| || || || ||||| || | ||||| | ||||| | ||||| ||||||||
Sbjct 162 AGCTGGTGTCATAGATGAAGACTACCGTGGAAACATTGGAGTGGTGTTATTCAATCATTC 103
Query 10559 TAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATATGTGAAAAAAT 10618
| |||||||||| | | || | ||| |||||||| ||||| |||||||||||| |||
Sbjct 102 CAGTGAAGATTTTGCAGTTAAAAAAGGTGATAGAATTGCTCAACTAATATGTGAAAGAAT 43
Query 10619 TTTATATCCTAAAATGTTAAAAGTCGATAGTTTATCAGAAAC 10660
||| || || | || | |||| || | | ||||||||||
Sbjct 42 TTTCTACCCAGATATAGTTGAAGTTGACAATCTATCAGAAAC 1
>seq4254
Length=614577
Score = 86.0 bits (94), Expect = 9e-12
Identities = 96/127 (76%), Gaps = 6/127 (5%)
Strand=Plus/Plus
Query 27418 GTAGATTCTCATAATATTATACCAGTATGGGTAACTTCAGATAAACAGGAATATAACGCA 27477
|||||| |||| ||| | | ||| ||||| |||| ||||||||||||||| |||
Sbjct 227672 GTAGATGCTCACAATGTGGTGCCATGTTGGGTGGCTTCTGATAAACAGGAATATTCAGCA 227731
Query 27478 AGAACAATAAGGATTAAAATAAA---TAAATTAAAAGATCAATATTTAATCGAATTTCCT 27534
||||||||||| | |||||| || |||||| |||| ||||| | | |||||||||
Sbjct 227732 AGAACAATAAGAAATAAAATCAATTCTAAATT---AGATGAATATCTCACAGAATTTCCT 227788
Query 27535 AAAGTTA 27541
|||||
Sbjct 227789 CCAGTTA 227795
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743486351809280
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