Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq2787 100 2e-16 seq3424 84.2 1e-11 >seq2787 Length=76071 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | || |||| ||| | |||| |||||| || || || ||||| || Sbjct 39734 TCCACCACGAAGACGCAATACCAAGTGAAGAGTAGATTCTTTTTGAATATTATAGTCAGA 39675 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || || |||| ||||| ||||| || |||||||| | || || || || || Sbjct 39674 AAGAGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAAATCAAACGTTGTTGATCTGGAGG 39615 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 | || |||||||| || ||| ||||| | || | || | ||||| | ||| | Sbjct 39614 AATGCCTTCCTTGTCTTGAAT-TTTGGCTTTTACATTTTCAATAGTATCGGAAGGTTCAA 39556 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||| || |||||||| || || || |||||||||||||||||||| Sbjct 39555 CTTCCAAAGTAATGGTTTTACCCGTAAGTGTTTTCACAAAGATCTGCAT 39507 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 34187 TGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGC 34246 || |||||| |||||| || ||||| ||||| ||||| ||| | || || ||||| Sbjct 41533 TGCAAAGTAGATTCTTTTTGGATGTTATAGTCCGACAGAGTGCGGCCATCCTCTAACTGT 41474 Query 34247 TTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTT 34306 || || || || ||||| ||||| ||||| ||| | || |||||| || ||||| Sbjct 41473 TTACCAGCAAAGATGAGACGCTGTTGGTCTGGGGGAATGCCCTCCTTATCTTGGATCTTA 41414 Query 34307 TGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTG 34366 ||| | || | || | |||| | || || |||| |||||||| || || || Sbjct 41413 GCCTTAACATTTTCGATAGTGTCGGATGGCTCCACCTCCAAAGTGATGGTCTTCCCAGTA 41354 Query 34367 AGAGTTTTCACAAAGATCTGCAT 34389 ||||| || |||||||||||||| Sbjct 41353 AGAGTCTTAACAAAGATCTGCAT 41331 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||| || || || | ||| || ||||| ||||||||||| ||| Sbjct 40417 CCACCTCGCAGACGCAGTACTAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAC 40358 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || ||||| ||||| || || || || || |||||||| || || Sbjct 40357 AGGGTGCGACCATCTTCCAATTGCTTACCAGCAAAGATAAGACGCTGCTGATCAGGTGGG 40298 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGC-TTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||| ||||| || ||| || |||| || | || | ||| | | ||| || Sbjct 40297 ATGCCCTCTTTGTCTTGGAT-TTTAGCTTTTACATTTTCAATAGTATCAGAGGGTTCCAC 40239 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || ||||| || || || || ||||| ||||| |||||||| Sbjct 40238 TTCCAGGGTAATGGTCTTTCCAGTTAGGGTTTTAACAAAAATCTGCAT 40191 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 34186 GTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTG 34245 ||| ||||| |||||||| || |||||||| || || ||| | || |||| ||| Sbjct 41306 GTGCAAAGTGGACTCTTTCTGAATATTGTAGTCAGAAAGAGTACGCCCATCCTCCAGCTG 41247 Query 34246 CTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTT 34305 |||||| ||||||||||| || || || || ||| | | ||| ||||| ||| | Sbjct 41246 CTTGCCAGCGAAAATGAGACGTTGTTGATCTGGGGGAATACCCTCTTTGTCTTGGATC-T 41188 Query 34306 TTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGG 34364 | ||||| | || | || | || | | ||| || || | ||||| ||||| || | Sbjct 41187 TGGCTTTAACATTTTCAATAGTGTCTGAGGGTTCAACTTCTAATGTGATAGTTTTCCCTG 41128 Query 34365 TGAGAGTTTTCACAAAGATCTGCAT 34389 | || || || |||||||||||||| Sbjct 41127 TCAGTGTCTTTACAAAGATCTGCAT 41103 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || | ||| |||||| |||||| || ||||||||||| ||||| ||| | || Sbjct 40174 AGTACTAAGTGCAAAGTAGATTCTTTTTGGATGTTGTAGTCAGACAGTGTACGACCATCT 40115 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || || |||||||| || ||||| || || || || || || | || || ||||| Sbjct 40114 TCTAATTGCTTGCCCGCAAAAATAAGACGTTGTTGATCCGGAGGAATGCCTTCTTTGTCT 40055 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 || ||| ||||| | || | || | || | | ||| || || | || || || Sbjct 40054 TGGAT-TTTAGCTTTCACATTTTCAATTGTGTCAGAAGCTTCAACTTCTAAAGTAATTGT 39996 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||| || ||||| ||||| |||||||| ||||| Sbjct 39995 TTTTCCAGTGAGTGTTTTAACAAAGATTTGCAT 39963 >seq3424 Length=494560 Score = 84.2 bits (92), Expect = 1e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 34186 GTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTG 34245 ||| |||||| ||| ||||| || || ||||| || || || | || ||||| || Sbjct 288814 GTGCAAAGTAGATTCCTTCTGGATATTATAGTCTGAGAGTGTGCGCCCATCTTCCAATTG 288755 Query 34246 CTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTT 34305 ||| || |||||||| || | || || || || | || |||||||| ||||| Sbjct 288754 CTTTCCGGCGAAAATTAGTCTTTGTTGATCTGGAGGGATGCCTTCCTTGTCTTGAATCTT 288695 Query 34306 TTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGT 34365 | ||||| | | || | ||| | | ||| || |||| ||||||||||| || || Sbjct 288694 TGCCTTTACGTTTTCGATTGTATCAGAAGCTTCCACTTCCAATGTGATGGTTTTCCCAGT 288635 Query 34366 GAGAGTTTTCACAAAGATCTGCAT 34389 | |||||| || ||||| ||||| Sbjct 288634 TAAAGTTTTTACGAAGATTTGCAT 288611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323055033571040