Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq3463 251 6e-62 seq2787 82.4 6e-11 >seq3463 Length=282612 Score = 251 bits (278), Expect = 6e-62 Identities = 741/1131 (66%), Gaps = 31/1131 (3%) Strand=Plus/Plus Query 35873 TTAGCAATCTGTCTGTAGTCGACCACGCCGTTTTCCCATGTACCCGTGATCGGTCCGACG 35932 || ||||||| || ||||| ||||| |||| || ||| || || ||| ||||| Sbjct 182042 TTCGCAATCTCCCTATAGTCAACCACTCCGTCTTGCCAAGTTCCTTTGACAGGTCCAGTA 182101 Query 35933 GCTACGCCACTGAATGGATTGTCACTGTTGTAGTTGTGGACGCCCGTCCAACCGCGGCCG 35992 || ||| |||| ||| ||| ||||| | || ||||| |||||||| || || Sbjct 182102 GCGTTGCCTGTGAAGGGAATGTTGTCTTTGTAATCATGAACGCCAGTCCAACCACGACCA 182161 Query 35993 TACATTGCTACGCCCAACACGAGtttttttGGATTCACTCGTTGCGCGAGCAAAGCGTCC 36052 ||||| || || || | || | || || |||||||||| ||||| ||||| | Sbjct 182162 TACATAGCAACACCTACTACAATCTTCTTAGGATTCACTCCCTGCGCCAGCAAGTATTTT 182221 Query 36053 ACGGCCACGTTGGCGGTGTACGGTTCGTTAGGTTTCCACGCGGAACCGTACAGTGCCGTC 36112 || | | || | ||||| | ||| || || |||||||| | |||||| || ||| Sbjct 182222 ACTCCGAAGTCAGATGTGTAAGTTTCCTTGGGATTCCACGCTGGCGCGTACAATGGCGTT 182281 Query 36113 TGATGACCGAGATCGGTATTAGACCAAGCTCCTTTGAAATCATAACTCATCACGAAAATT 36172 ||||| || ||| | ||| ||||| ||||| ||||| || |||||||||| |||||| Sbjct 182282 TGATGTCCAAGAGTGTCATTTGACCAGGCTCCCTTGAAGTCGTAACTCATCAAGAAAATA 182341 Query 36173 TTATCTAAATACTGTTGTGCTCGGTCGTAATTAACCGCGGCGATCTTGTCTATGCCAGCG 36232 | ||| | ||| | ||| || | | || | || | ||| || || |||||| Sbjct 182342 TGATCCATATAATTTTGAGCCTTGCCATAGTCTACAACTTGGATTTTATCCCATCCAGCG 182401 Query 36233 CTAATCGCTGTGGTGAGTTCTAAAGT---ACGATTCGTTTGTATTTGAACTTGATCGAGC 36289 ||||| || | || | ||| | | || |||| || | || || | |||||| Sbjct 182402 CTAATAGCAGAAGTTAATTCGTATTTCTTACCATTC--TTAGCTGAGAGCTCG-TCGAGC 182458 Query 36290 ATGGCGCGCAATTCGCCCAATAAAGCGATATACGTGTTATTGTCGCGTTCCACATCGCCA 36349 || | || ||||| || ||| | ||| | | || ||| || Sbjct 182459 ATCTCACGTAATTCTTTCATCAAACTTACATAACAATCACCATC---TTCTGGGCTACCG 182515 Query 36350 ACGTTTGGATTGGCGCCTTTGCCGCCCGGAAATTCCCAATCAATATCGATGCCGTCGAAA 36409 | || || || || |||||||| || || || |||||||| ||||| | || ||||| Sbjct 182516 AGGTCAGGGTTAGCACCTTTGCCACCAGGGAACTCCCAATCGATATCAACACCATCGAAG 182575 Query 36410 AATTTCCATGTCAACACAAATTCACGCACGGATTCGACAAAAATTTGTCGCGTTCGCGCA 36469 ||||||||||| | | ||| || || || | ||||| ||| |||| | | Sbjct 182576 AATTTCCATGTTAGAAGAAACTCCTTTACTGACTGCACAAA------TCGTGTTCTCTTA 182629 Query 36470 ---TCGTGCATATGATAGAAG---GGATCGGACAGTGTCCAACCGCCGATTGATGCCAAC 36523 | || | | ||||| ||||||| || ||||| || || || || | || Sbjct 182630 GATTTGTCAACTAAAAAGAAGAAAGGATCGGCAAGCGTCCACCCACCAATAGAGGG-AAG 182688 Query 36524 ACTTTTAGATTG-GGATTGGCCAATTTTGCTGCCATTAATTGACCAAAATTGCCTTTGTA 36582 | | || ||| || ||| |||| || ||||||||| ||||| ||||||||||| Sbjct 182689 AATCTTCAATTCAGGGCGGGCTTGTTTTAGTGACATTAATTGGCCAAAGTTGCCTTTGTA 182748 Query 36583 GGGTTCGTTCCATGCGCTAACGCCTGTTTGTGGTTTTTGGAGCGCCGCCCACGGATCGTG 36642 || |||||||||| | ||| ||||||||||||| | || ||||| |||||||| Sbjct 182749 AGGCTCGTTCCATGAAGACAATCCTTTTTGTGGTTTTTGTAATGCTGCCCATGGATCGTG 182808 Query 36643 TATGGAAACTTTAAAATTGTCCCTGCCAGCGCACGATCTTTGCAACGCTTCAAAACTCCC 36702 || || ||||| || | || | ||| || || | || | |||| ||||| || Sbjct 182809 GATTGAGACTTTGAAGTCCTCACGGCCGCTACAGGACCGCTGTAGTGCTTGGAAACTGCC 182868 Query 36703 CGTGATAGATTTTAAACTGTCGTTTATACCGTCACCGCCGCAAATCGGTATAAATCCGTA 36762 ||| ||||||||| || || || ||||||||||||||||| || ||||| ||||| Sbjct 182869 TTCGATCTCTTTTAAACTATCATTGATGCCGTCACCGCCGCAAATTGGGATAAAGCCGTA 182928 Query 36763 TAAAATGTGCGAAAGGTTCGGCGTGGGCACTTTGTCCACGGGAAAAGATCGACCGTAAAC 36822 | | || | ||| || || | || | |||||||| || | | || || Sbjct 182929 GAGCAAATGAGTAAGATTAGGTATAGGTATACGATCCACGGGGAATTTCCTAGGATAGAC 182988 Query 36823 GCCCCATTCGACAAAATAGGCCGCTACGGTGTGATCAG-TGTTGTACGTATACGGTTTAT 36881 |||||||| || || ||||| | || | ||| |||| | | | |||| |||| Sbjct 182989 ACCCCATTCTACGAAGTAGGCACCCACAACTTTTCCAGATGTT-TGCTTGAACGGCTTAT 183047 Query 36882 TGTTTTCTTGCCACGTGTATTGTAACGGTTTTAAATGTTTACCATCGGTGTCTGCGATCA 36941 | |||||| | | || |||| | || |||||| | |||||||| || || || Sbjct 183048 TTTTTTCTCCCAATGTATATTCCAGAGGAGGTAAATGACTTCCATCGGTATCGGC---CA 183104 Query 36942 CGACTTCTACGGTTTGACTAGCCGAA---CAGCCGTCGGCATTGCACAGTT 36989 |||| | |||| || | ||| ||||||||| ||||||| |||| Sbjct 183105 CGACAATTTCGGTGGGATCACTTGAACTGCAGCCGTCGTCATTGCAAAGTT 183155 >seq2787 Length=76071 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| |||||||||||| |||| || || || || ||| | || || ||| | Sbjct 40191 ATGCAGATTTTTGTTAAAACCCTAACTGGAAAGACCATTACCCTGGAAGTGGAACCCTCT 40250 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | | | |||| ||| || | ||||| | ||||| ||| | || ||| ||| Sbjct 40251 GATACTATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAGGGCATCCCACCTGATCAG 40310 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || ||| | || | ||| || || ||| |||||||| || || || |||| | Sbjct 40311 CAGCGTCTTATCTTTGCTGGTAAGCAATTGGAAGATGGTCGCACCCTGTCTGACTACAAC 40370 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || ||||| ||| | || |||||| |||| | || |||| || ||| Sbjct 40371 ATCCAGAAGGAGTCTACCCTTCATCTAGTACTGCGTCTGCGAGGTGGT 40418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418282032373280