Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_003266.2 Length=35994 Score E Sequences producing significant alignments: (Bits) Value seq3063 354 2e-93 >seq3063 Length=7092 Score = 354 bits (392), Expect = 2e-93 Identities = 331/421 (79%), Gaps = 0/421 (0%) Strand=Plus/Plus Query 11214 GGTCACGGCGTACGAGCAGACCGTGAAGGAGGAGAGCAACTTCCAAAAATCCTTCAACAA 11273 ||| || |||||||||||||| ||||| |||||| ||||| |||||| ||| ||||| Sbjct 6672 GGTTACCGCGTACGAGCAGACGGTGAACCAGGAGATTAACTTTCAAAAAAGCTTTAACAA 6731 Query 11274 CCACGTGCGCACCCTGATCGCGCGCGAGGAGGTGACCCTGGGCCTGATGCACCTGTGGGA 11333 |||||||||||| || | ||||||||||||||| | | || |||||||| |||||||| Sbjct 6732 CCACGTGCGCACGCTTGTGGCGCGCGAGGAGGTGGCTATAGGACTGATGCATCTGTGGGA 6791 Query 11334 CCTGCTGGAGGCCATTGTGCAGAACCCCACCAGCAAACCGCTGACGGCGCAGCTGTTCCT 11393 | | | || | | ||| ||||| | ||||| ||||| | ||||||||||||||| Sbjct 6792 CTTTGTAAGCGCGCTGGAGCAAAACCCAAATAGCAAGCCGCTCATGGCGCAGCTGTTCCT 6851 Query 11394 GGTGGTGCAGCACAGTCGGGACAACGAGACTTTTAGGGAGGCGCTGCTGAATATCACCGA 11453 | ||||||||||| ||||||||||| | || ||||| |||||||| || || || Sbjct 6852 TATAGTGCAGCACAGCAGGGACAACGAGGCATTCAGGGATGCGCTGCTAAACATAGTAGA 6911 Query 11454 GCCCGAGGGCCGCTGGCTTCTGGACCTGGTGAATATTCTGCAGAGCATCGTGGTGCAGGA 11513 |||||||||||||||||| || || || | || |||||||||||||| ||||||||||| Sbjct 6912 GCCCGAGGGCCGCTGGCTGCTCGATTTGATAAACATTCTGCAGAGCATAGTGGTGCAGGA 6971 Query 11514 GCGCGGGCTGCCGCTGTCCGAGAAGCTGGCGGCCATCAACTTTTCGGTGCTGAGTTTGGG 11573 |||| | || ||| | || ||| |||| ||||| |||| ||| |||| ||| |||| Sbjct 6972 GCGCAGCTTGAGCCTGGCTGACAAGGTGGCCGCCATTAACTATTCCATGCTCAGTCTGGG 7031 Query 11574 CAAGTACTACGCTAGGAAGATCTACAAGACCCCGTACGTGCCCATAGACAAGGAGGTGAA 11633 ||||| ||||| | ||||| ||| | ||||| ||||| ||||||||||||||||| || Sbjct 7032 CAAGTTTTACGCCCGCAAGATATACCATACCCCTTACGTTCCCATAGACAAGGAGGTAAA 7091 Query 11634 G 11634 | Sbjct 7092 G 7092 Score = 134 bits (148), Expect = 3e-27 Identities = 204/279 (73%), Gaps = 26/279 (9%) Strand=Plus/Plus Query 15866 CAGGACTCGGAGACGCGCGGCCACGGCGGCGGCAGCGGCCAT-AGCCAGC-ATGTCCCGC 15923 |||| | || |||| |||||| | || || || |||||||| || || ||| | | Sbjct 407 CAGGTCCAGGCGACGAGCGGCCGCCGCAGCAGCCGCGGCCATTAGT--GCTATGACTCAG 464 Query 15924 CCGCGGCGAGGGAACGTGTACTGGGTGCGCGACGCCGCCACCGGTGTGCGCGTGCCCGTG 15983 || | || ||||||||||||||||||||| | | ||| |||||||||||||| Sbjct 465 GGTCGCAGGGGCAACGTGTACTGGGTGCGCGACTCGGAATTCGGCCTGCGCGTGCCCGTG 524 Query 15984 CGCACCCGCCCCCCTCGCAC-----TTG-AAGATGTTC--ACTTCG---CGA--TGTTG- 16029 |||||||||||||| |||| ||| |||| |||| | || ||||| Sbjct 525 CGCACCCGCCCCCCGCGCAACTAGATTGCAAGAAAAAACTACTTAGACTCGTACTGTTGT 584 Query 16030 ATGTGTCC-----CAGCGGCGAGGA--GAAGG-ATGTCCAAGCGCAAATTCAAGGAAGAG 16081 |||| ||| | |||||| | | |||| ||||||||||||||| |||| |||||| Sbjct 585 ATGTATCCAGCGGCGGCGGCGCGCAACGAAGCTATGTCCAAGCGCAAAATCAAAGAAGAG 644 Query 16082 ATGCTCCAGGTCATCGCGCCTGAGATCTACGGCCCCGCG 16120 |||||||||||||||||||| |||||||| |||||| || Sbjct 645 ATGCTCCAGGTCATCGCGCCGGAGATCTATGGCCCCCCG 683 Score = 125 bits (138), Expect = 2e-24 Identities = 136/177 (77%), Gaps = 4/177 (2%) Strand=Plus/Plus Query 15477 CCCAGCAAGATGTACGGAGGCGCTCGCCAACGCTCCACGCAACACCCCGTGCGCGTGCGC 15536 || |||||||||| || || || | |||||| |||||||| |||||||||||| Sbjct 3 CCAAGCAAGATGTTTGGCGGGGCAAAGAAGCGCTCCGACCAACACCCAGTGCGCGTGCGC 62 Query 15537 GGGCACTTCCGCGCTCCCTGGGGCGCCCTCAAGGGCCG-CGTGCGGTCGCGCACCACCGT 15595 ||||||| |||||| ||||||||||| | ||| || | || | | |||||||||||| Sbjct 63 GGGCACTACCGCGCGCCCTGGGGCGCGCACAAACGCGGCCGCACTG-GGCGCACCACCGT 121 Query 15596 CGACGACGTGATCGACCAGGTGGTGGCCGACGCTCGCAACTACA--CCCCCGCCGCC 15650 ||| |||| || ||| |||||||| || || |||||||||| ||| ||||||| Sbjct 122 CGATGACGCCATTGACGCGGTGGTGGAGGAGGCGCGCAACTACACGCCCACGCCGCC 178 Score = 116 bits (128), Expect = 9e-22 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 16275 TGAGACCCGGCACCACGGTGGTTTTCGCGCCTGGCGAGCGGTCCGGCACGACATCCAAGC 16334 || ||||||||||||| || ||||| |||| || ||||| ||| | || | ||||| Sbjct 841 TGCGACCCGGCACCACCGTAGTTTTTACGCCCGGTGAGCGCTCCACCCGCACCTACAAGC 900 Query 16335 GCTCCTACGATGAGGTGTACGGGGACGAGGATATTCTCGAGCAGGCGGCCGAGCGCCTGG 16394 || || |||||||||||||| |||||||| | || |||||||| ||||||||| | Sbjct 901 GCGTGTATGATGAGGTGTACGGCGACGAGGACCTGCTTGAGCAGGCCAACGAGCGCCTCG 960 Query 16395 GCGAGTTTGCTTACGGCAAGCG 16416 | |||||||| ||||| ||||| Sbjct 961 GGGAGTTTGCCTACGGAAAGCG 982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 115053312492648