Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3345 524 1e-143 seq1351 91.5 2e-13 >seq3345 Length=207354 Score = 524 bits (580), Expect = 1e-143 Identities = 1108/1630 (68%), Gaps = 57/1630 (3%) Strand=Plus/Minus Query 62026 TTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGAT 62085 |||||||| | ||||| | || || ||||| | | | ||| ||||| || |||| | Sbjct 113397 TTATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGT 113338 Query 62086 AGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGG 62145 |||||||||| ||||||| ||| | |||| ||| ||||| || ||| ||||| Sbjct 113337 AGTACATTCCTGTTTTTAAACCCATTTTCCAAGCGTGGAAATGAATCGACGTAAGTTTTC 113278 Query 62146 AATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCC 62205 ||| | || | || | ||| || || | |||||||||||| || || || ||||| | Sbjct 113277 CATAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATAAAAGCTCCTC 113218 Query 62206 TGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA-AACT 62264 | || || ||||| | |||| || || ||| ||| ||||| | ||||| || || | Sbjct 113217 TATCAGCTGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAAT 113158 Query 62265 CGCTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATGGATCCACCATCTACCATAATC 62321 | |||| | |||| |||| ||| | |||| | || |||||| | ||||| Sbjct 113157 CTCTTATT-TCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATA 113099 Query 62322 CTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGG 62381 ||| || || || |||| ||| || | | || ||| | | || ||||| || Sbjct 113098 AGATTTTTCATATCTTCATCCCACAAATCAGCCCGAGTCAAATCAGTCAGAAGATGATGG 113039 Query 62382 TTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGT 62441 || ||||| | ||||||||||| || ||||| | ||||||||| ||| | ||| Sbjct 113038 TTCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAAGGGT 112979 Query 62442 TCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 62501 || | || ||| | || || | |||||| ||||| || ||||||||||| || || | | Sbjct 112978 TCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATTGGAGCTATC 112919 Query 62502 AATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGATGTTCCCAATTCC 62559 |||| | ||| | | ||| ||||| || || || ||||| || |||| | || Sbjct 112918 AATAGAGAATTGCGCAAACC--ATGTTTTGCTATCTTTTCTTTGAGGGCAGCCCAGTCCC 112861 Query 62560 AAAGATCCGACGG-------TACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTG 62612 |||| || | || | | ||| ||| || || ||||| | || Sbjct 112860 AAAGGTCTGTAGGAGTTTTGTCCCACATATC-------ATACTGGAGGATACCTTGGCTT 112808 Query 62613 GC-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGC 62671 || | || ||| |||||| |||| ||||| || ||||||| || |||||| || Sbjct 112807 GCTGGACTC-CCTTGATATGTGCTGTATGCACCTTCTTTTTCAGCTAATTCACAACTAGC 112749 Query 62672 CTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGG 62731 ||||||||||| |||||||| |||||||| || | | ||| ||| | ||||| | Sbjct 112748 TTCTAATGCACCATAATAAATTGTTTCAAATATTTGTTGATTGAGAAGTATTGCTTTCTC 112689 Query 62732 GCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACC 62791 || || | | | | | | | |||||| || || | || |||||||||||||| Sbjct 112688 ACTTTCGTAAGAAATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATACC 112629 Query 62792 GATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATC 62851 ||||||||||||||| |||| || ||| ||||| || | ||||||| |||||| ||| Sbjct 112628 AATAGGTCTATGTCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAATTAACATC 112569 Query 62852 TATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAA 62908 |||| ||| || | |||| | ||||| ||||| | || || | ||| ||| Sbjct 112568 AATAACTTTGTTTAAATTTTGAGTTACAAT--CTTTGTG-ATTTCTTTTAATTTTTTAAA 112512 Query 62909 ATCAAATCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGC 62968 || ||||| || | ||||||||||| | ||| | || || || || ||||| || Sbjct 112511 ATTAAATCTATTATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGC 112452 Query 62969 TACCTCATTAGCATCCGCA---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGAT 63025 || |||| | || | | ||||| | | ||||||||||||||| ||||| || || Sbjct 112451 CACTTCAT---CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAAT 112395 Query 63026 AGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGG 63085 ||| || | ||||| ||||||||||||| ||||||| ||||||||||| | ||| |||| Sbjct 112394 AGTGCCAAGATTTTTTTGATTACTCTTTCTGTTACAAGCATCCTTATACAACATGTATGG 112335 Query 63086 AGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTAT 63145 |||||||| || | || | ||||||||| | ||||| | || |||| | | | Sbjct 112334 TGTACCAGTCTCTACTTGGGCTTCTATAATTGACTTCCATAACTCTTGAGCTCTGACTT- 112276 Query 63146 AGATTTGTATCTCCTTTCTCTT--TCGTATAGAGTATACAATCGTTCGAACTCGTCTCCC 63203 | ||| || || ||| |||| || ||| | ||| | | ||| || || ||||| Sbjct 112275 -GTTTTATAAATCGTTTTTCTTCTTCATATTTGGCATATAGTTCTTCAAATTCCTCTCCA 112217 Query 63204 CAAACATTGTCCAAT-CTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATC 63262 || || | | | | |||||| |||| |||||||| | ||| || ||||| Sbjct 112216 -AAGCAGTCAGCGAGGCCAGGACAATCATGAGGACACATGAGACTCCAAACT---TCATC 112161 Query 63263 CTTC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGT 63319 ||| |||| ||||||||| ||||| || ||||| | || ||| || ||||| | Sbjct 112160 CTTTTCTACTCTTTTCATAAACAGATCTGGTATCCATAAGGCATAAAACAGTTCTCTAGC 112101 Query 63320 TCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATG 63379 ||| ||| || || || || ||||| || | ||| | ||| | | || || | ||| Sbjct 112100 TCTCATTTCTTCCTTACCCGTGTTCTTCTTTAAATCCAAGAATTCAAATATGTCTGCATG 112041 Query 63380 CCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTA 63439 ||| || || || || || || | | || || ||||||||||| || ||||||| || Sbjct 112040 CCAAGGCTCTAAATAAATCGCAAATGCACCGGGACGTTTGTTTCCACCTTGATCTACATA 111981 Query 63440 TCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGT 63499 ||| || || || ||||| |||||||||||||| | | ||| || || | ||||| || Sbjct 111980 TCTGGCAGTATTGTTATACACTCTCAACATTGGCACTAGACCATTCGAGACCCCATTAGT 111921 Query 63500 ACCGGAGATATAGCCTCCACTG-GCACGAAT---ATTACTAATTGATAGACCTATTCCCC 63555 || | || || || ||| || | || || || || || |||||| || | Sbjct 111920 GCCAGCTATGTAAGAACC-CTGAGCTCTGATGCAATGTGTA--TG-TAAACCTATGCCAC 111865 Query 63556 CTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTAT 63615 | || |||||| |||||||| ||| ||||||| || ||| | || ||||| ||||||| Sbjct 111864 CAGCAGATTTAGAAATTAATGCACATTGTTTTAAAGTATCAAAAATACCTTCAATGCTAT 111805 Query 63616 CATCGATCAT 63625 | || |||| Sbjct 111804 CGTCTTTCAT 111795 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 64017 TTTTTTGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCC 64076 || || || || || |||| ||| ||||| ||||||||||| || | |||||||||||| Sbjct 110521 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATGGCATAATCG 110462 Query 64077 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 64136 ||||| | ||| || ||| ||||| ||||| || || ||| | || | || | ||| Sbjct 110461 GGATGATCTGTGGTCTTAGTAGCTGCAATTTCAGCAGCTAGATTATCAAGCTCAGCAGTT 110402 Query 64137 GTTACTCCATTATATATTCC 64156 ||||| ||| |||||| || Sbjct 110401 GTTACACCAGAATATATGCC 110382 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 63807 TTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 63866 || |||||||| |||||||| || ||| ||||||||||||| ||||||||||| |||||| Sbjct 111269 TTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTGAAACCAAAATAATTGTAT 111210 Query 63867 GAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTT 63916 ||| |||| || |||| |||| | || | | || ||||| | ||| Sbjct 111209 TTAAAATCTCTATCATAAACAATAGCAGAGTCTAATTTGTCCTTGTTTTT 111160 >seq1351 Length=825266 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 34068 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 34127 || |||| || |||||||| | |||||||| ||||| || || ||||||||||| | | Sbjct 602570 TTGGATAAGTCTACTTCTTCTGCAGTCCAAAACGATGCTTCAGCTTTTTTATACATCTGC 602629 Query 34128 CAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 34175 || || || |||||||||||||||| |||||||| | | |||||| Sbjct 602630 CATATATCTGGATATTGGATTGGGAATATAACAAAACGTCTAGGATTT 602677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629783676449520