Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq3345 524 7e-144 seq1351 136 4e-27 >seq3345 Length=207354 Score = 524 bits (580), Expect = 7e-144 Identities = 1183/1761 (67%), Gaps = 29/1761 (2%) Strand=Plus/Minus Query 36805 ATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTC 36864 |||| ||||| ||| | |||||| | | || |||||||| ||||||| |||| | || Sbjct 113368 ATAGCATTTGCTGCTGGTTTTGTGCGTAAGTAGTACATTCCTGTTTTTAAACCCATTTTC 113309 Query 36865 CATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTC 36924 || ||| ||||| || || |||||| | || |||| ||| | | || ||| | Sbjct 113308 CAAGCGTGGAAATGAATCGACGTAAGTTTTCCATAGTTAGGTTTAGCAACATGTATGTTA 113249 Query 36925 ATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTT 36984 | ||||||||||| |||||||| || ||||| || |||||||| | || | || || Sbjct 113248 AAAGATTGACTTTGGTCTATAAAAGCTCCTCTATCAGCTGCCATCTGTA---TGGATGTT 113192 Query 36985 T---GAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAATCTA-- 37039 | | || |||||||| || ||||| || | | | |||| || | | | || | | Sbjct 113191 TTCAGTGAAATCTCCCATACGGTTTTGTACAAATCTCTTAT-TTCTTTAGGAATTTTTTC 113133 Query 37040 AATGT--TGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCATTATTCCACAT 37097 ||| | || ||||| ||||| | | | ||| ||| || || || | || ||||| Sbjct 113132 AATTTCTTGTATAGATCCATTGTTGTATATAATAAGATTTTTCATATCTTCATCCCACAA 113073 Query 37098 ATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAA 37157 || | | | || ||| || || | || || || |||| ||||||||||| Sbjct 113072 ATCAGCCCGAGTCAAATCAGTCAGAAGATGATGGTTCACTACAGGAAATTCTCCAGATAA 113013 Query 37158 TACTCTTCTT--GTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAAT 37215 ||||||||| ||| |||| ||| | ||| | ||||||| || ||| | || | | Sbjct 113012 GACTCTTCTTTGGTAAATAT-TTGAT-GTAAAGGGTTCAAAAGATTCAGTGTTGCCAAGA 112955 Query 37216 ATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGT 37275 ||||| | ||||| ||||| |||||||| ||||| | || ||| | ||| |||||| Sbjct 112954 ATTTGTGCAGTAGAGGCAGTCGGCATTGGAGCTATCAATAGAGAATTGCGCAAACCATGT 112895 Query 37276 GTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTAACCAC 37335 | || | | ||| || || ||| ||||| | ||||| || | || |||| Sbjct 112894 TTTGCTATCTTTTCTTTGAGGGCAGCCCAGTCCCAAAGGTCTGTAGGAGTTTTGTCCCAC 112835 Query 37336 ATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCG 37395 |||||||| || || ||||||| || |||||| | | |||||| || | || Sbjct 112834 ATATCATACTGGAGGATACCTTGGCTTGCTGGACTCCCTTGATATGTGCTGTATGCACCT 112775 Query 37396 TAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATT 37455 | ||| ||||| ||| ||||||| ||||| ||| ||||||| |||||||| || ||| Sbjct 112774 TCTTTTTCAGCTAATTCACAACTAGCTTCTAATGCACCATAATAAATTGTTTCAAATATT 112715 Query 37456 TGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACA 37515 ||| ||| | | | |||||| || || ||| | | | | || || | |||| || Sbjct 112714 TGTTGATTGAGAAGTATTGCTTTCTCACTTTCGTAAGAAATTCTCATCAACACAAACGCA 112655 Query 37516 TCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGAT 37575 || |||| ||||||||||| ||||| || ||||||||| || |||| || | | | Sbjct 112654 TCTGCCATGCCCTGAACACCAATACCAATAGGTCTATGTCTCATATTTGAAGTTTTTGCT 112595 Query 37576 TCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACTAGTATTTTC 37635 || || |||||| |||| | ||| || | ||| |||| ||||| | || || || Sbjct 112594 TCAGGGACAGGATAAAAATTAACATCAATAACTTTGTTTAAATTTTGAGTTACAATCTTT 112535 Query 37636 GTAATTATTCTCAACTTGTCGAACATAAATACGTTATTATTAACAAATTTACTCAACGAA 37695 || ||| | | || || | || ||||| ||||| | |||||| | | | | Sbjct 112534 GTGATTTCTTTTAATTTTTTAAAATTAAATCTATTATTTTCAACAAACATGTTAAGTGCT 112475 Query 37696 ATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTA 37755 || || | || || || || || ||||||||||| | | |||| | || ||| || Sbjct 112474 ATGGAAGCAAGGTTGCACACTGCCACTTCATCTTCTGAAGTGTATTGCACAACCTCAGTG 112415 Query 37756 CAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAA 37815 || ||||| || || |||| || || | ||| ||||||| ||| | ||||||| | Sbjct 112414 CAAAGATTGCTACATTTAATAGTGCCAAGATTTTTTTGATTACTCTTTCTGTTACAAGCA 112355 Query 37816 TCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCAT 37875 || ||||| | || || || || || |||| ||| || || ||||| || |||||| Sbjct 112354 TCCTTATACAACATGTATGGTGTACCAGTCTCTACTTGGGCTTCTATAATTGACTTCCAT 112295 Query 37876 AAACTTCTT--GCTTTAACGATCGCTTT---AAt-ttttttCTTTGTTTCGTATTCTATA 37929 || |||| ||| | || | | ||| ||| |||||||| ||| |||| | Sbjct 112294 AA--CTCTTGAGCTCTGAC--TTGTTTTATAAATCGTTTTTCTT--CTTCATATTTGGCA 112241 Query 37930 TATAATTTGTTAAAATCATTCCCCCATACA-TCGCATAATCCTGGACATTCGCATGGACA 37988 ||| | || || |||| || || | || || | || ||||| || ||||| Sbjct 112240 TAT-AGTTCTTCAAATTCCTCTCCAAAGCAGTCAGCGAGGCCAGGACAATCATGAGGACA 112182 Query 37989 CATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAA 38048 ||| ||| ||| ||||||| |||||||| | || |||||| | ||| |||| |||||| Sbjct 112181 CATGAGACTCCAAACTTCATCCTTTTCTACTCTTTTCATAAACAGATCTGGTATCCATAA 112122 Query 38049 TGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAG 38108 ||| ||| | ||| | | ||| |||||| || || ||||| |||| | Sbjct 112121 GGCATAAAACAGTTCTCTAGCTCTCATTTCTTCCTTACCCGTGTTCTTCTTTAAATCCAA 112062 Query 38109 AAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTT 38168 || || ||||| || || ||||| || |||| |||||||| | ||| || || | ||| Sbjct 112061 GAATTCAAATATGTCTGCATGCCAAGGCTCTAAATAAATCGCAAATGCACCGGGACGTTT 112002 Query 38169 ATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTAT 38228 | || || |||| | |||||| | || || ||||| | ||| ||||| || |||| Sbjct 112001 GTTTCCACCTTGATCTACATATCTGGCAGTATTGTTATACACTCTCAACATTGGCACTAG 111942 Query 38229 ACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTAT 38288 |||||| || || || | || | ||| |||| ||||| ||||| || | | | Sbjct 111941 ACCATTCGAGACCCCATTAGTGCCAGCTATGTAAGAACCCTGAGCTCTGATGCAATGTGT 111882 Query 38289 CGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAA 38348 || ||||| ||||| ||| ||| || ||||| || ||||||||||| |||||||| Sbjct 111881 ATGTAAACCTATGCCACCAGCAGATTTAGAAATTAATGCACATTGTTTTAAAGTATCAAA 111822 Query 38349 TATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAA 38408 |||||||| || || || || || || | || | || || || | || ||| Sbjct 111821 AATACCTTCAATGCTATCGTCTTTCATAGCTATAAGGAAGCAGGAGGAAAGCTGCGGCCG 111762 Query 38409 TGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATA 38468 || || | || |||| |||||| ||||||| | || |||| || |||| Sbjct 111761 CGGTGTGGCTGCTGAGAATAGTGTAGGGCTTGCATGTGTAAAATATTTCTCTGACATCAT 111702 Query 38469 ATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCAT 38528 |||||| || | ||| || ||| || || | || ||||| |||| || || ||||| Sbjct 111701 ATTATAAGTATTGATTGCACTATCAATGTCTTCACCATGAATGCCTATGGAGACTCTCAT 111642 Query 38529 TAGCATATGTTGTGGTCTTTC 38549 ||||| ||||| || ||||| Sbjct 111641 AAGCATGTGTTGAGGCCTTTC 111621 >seq1351 Length=825266 Score = 136 bits (150), Expect = 4e-27 Identities = 170/229 (74%), Gaps = 8/229 (3%) Strand=Plus/Plus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 ||| |||| |||||| || ||||||||| ||||| |||||||||| |||||||||||| Sbjct 602220 ATCCCTTATATATGTGTCAATTAATAAAGAGTACATCTCTGAATGAACATTTTCCATAGC 602279 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACAC-TGTACATCCACATAAAATCTTT 12008 |||||||| |||||||| || | || || | ||| || || || |||| | | Sbjct 602280 AATTTGAAAACCATAGAAGCACCTGGCTTCAG-TCACTTGAACCTCTTGTGAAAAACGCT 602338 Query 12009 CCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTA 12068 || | || |||||||| |||||||||||| || ||||| ||||||| | ||| || | Sbjct 602339 CCACCAAGTTCTCATTAACAATACCATCAGAAGCCGCAAAGAATGCTAAAACATGCTTGA 602398 Query 12069 TAAAGTATTTTTC---GTCTTTAGTTAATTTATCCCAATCATCTAAATC 12114 |||| | ||| || |||| ||||| | |||||||| |||| || Sbjct 602399 TAAAATGTTTCTCACAATCTT---TTAATGTCTCCCAATCTGCTAAGTC 602444 Score = 114 bits (126), Expect = 1e-20 Identities = 152/209 (73%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 11666 ATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATA 11725 || ||||||||| || || ||||||||||||| ||||||||||| | ||||||||| Sbjct 601408 ATAAGTTCATTACTGAAAGTCAATCCGGGCATCAGACCTCGTTTTTTCAACCAAAATATT 601467 Query 11726 GCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCT 11785 | |||||| || || || ||||||||||| || |||||||| || | || | |||| Sbjct 601468 GAAGCAAAGCTGCCTGAGAAAAATATTCCCTCAACTGCTGCAAAAGCAATTATACGTTCT 601527 Query 11786 CC--ATATACCT-TGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACG 11842 || || || || | ||||| ||||| | | ||||| || || ||||| || || Sbjct 601528 CCAAATGTAGCTGTCTTGCTGCCGATCCACTGTAACGCCCAGTCTGCCTTCTTCTTAACA 601587 Query 11843 CATTCCATTGTTTCTATAGCGTTAAATAA 11871 ||| | ||||| || || || ||||| Sbjct 601588 CATGGTAGAGTTTCAATTGCATTGAATAA 601616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468499564082960