Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq3345 515 5e-141 >seq3345 Length=207354 Score = 515 bits (570), Expect = 5e-141 Identities = 1098/1622 (68%), Gaps = 41/1622 (3%) Strand=Plus/Minus Query 64819 TTATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGAT 64878 |||||||| | ||||| | || || ||||| | | | ||| ||||| || |||| | Sbjct 113397 TTATTTTACCTTTGTCTACAGTAAACTGAATAGCATTTGCTGCTGGTTTTGTGCGTAAGT 113338 Query 64879 AGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGG 64938 |||||||||| ||||||| ||| | |||| ||| ||||| || ||| ||||| Sbjct 113337 AGTACATTCCTGTTTTTAAACCCATTTTCCAAGCGTGGAAATGAATCGACGTAAGTTTTC 113278 Query 64939 AATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCC 64998 ||| | || | || | ||| || || | |||||||||||| || || || ||||| | Sbjct 113277 CATAGTTAGGTTTAGCAACATGTATGTTAAAAGATTGACTTTGGTCTATAAAAGCTCCTC 113218 Query 64999 TGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACT 65057 | || || ||||| | |||| || || ||| ||| ||||| | ||||| || || | Sbjct 113217 TATCAGCTGCCATCTGTATGGATGTTTTCAGTGAAATCTCCCATACGGTTTTGTACAAAT 113158 Query 65058 CGCTTAATATCTTCTGGAAGGTTTGTA--TTCT-GAATGGATCCACCATCTGCCATAATC 65114 | |||| | |||| |||| ||| | |||| | || |||||| | ||||| Sbjct 113157 CTCTTATT-TCTTTAGGAATTTTTTCAATTTCTTGTATAGATCCATTGTTGTATATAATA 113099 Query 65115 CTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGA 65174 ||| || || || |||| ||| || | | || ||| | | || ||||| | Sbjct 113098 AGATTTTTCATATCTTCATCCCACAAATCAGCCCGAGTCAAATCAGTCAGAAGATGATGG 113039 Query 65175 TTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGT 65234 || ||||| ||||||||||||| || ||||| | ||||||||| ||| | ||| Sbjct 113038 TTCACTACAGGAAATTCTCCAGATAAGACTCTTCTTTGGTAAATATTTGATGTAAAGGGT 112979 Query 65235 TCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 65294 || | ||| ||| | || || | |||||| ||||| || ||||||||||| || || | | Sbjct 112978 TCAAAAGATTCAGTGTTGCCAAGAATTTGTGCAGTAGAGGCAGTCGGCATTGGAGCTATC 112919 Query 65295 AATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCC 65352 |||| | ||| | | ||| ||||| || || || ||||| || | |||| | || Sbjct 112918 AATAGAGAATTGCGCAAACC--ATGTTTTGCTATCTTTTCTTTGAGGGCAGCCCAGTCCC 112861 Query 65353 AAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTAC 65411 |||| || | || || || ||||| | || || | || Sbjct 112860 AAAGGTCTGTAGGAGTTTTGTCCCACATATCATACTGGAGGATACCTTGGCTTGCTGGAC 112801 Query 65412 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 65471 ||| |||||| ||||| ||||| || ||||||| ||||||||| || |||||| Sbjct 112800 TC-CCTTGATATGTGCTGTATGCACCTTCTTTTTCAGCTAATTCACAACTAGCTTCTAAT 112742 Query 65472 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 65531 ||||| |||||||| ||||| || || | | ||| ||| | ||||| | || || Sbjct 112741 GCACCATAATAAATTGTTTCAAATATTTGTTGATTGAGAAGTATTGCTTTCTCACTTTCG 112682 Query 65532 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 65591 | | | | | | | |||||| ||||| | || |||||||||||||| |||||| Sbjct 112681 TAAGAAATTCTCATCAACACAAACGCATCTGCCATGCCCTGAACACCAATACCAATAGGT 112622 Query 65592 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 65651 ||||||||| |||| || ||| ||||| || | ||||||| |||||| ||| |||| | Sbjct 112621 CTATGTCTCATATTTGAAGTTTTTGCTTCAGGGACAGGATAAAAATTAACATCAATAACT 112562 Query 65652 TTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT 65708 || || | |||| | ||||| ||||| | || || | ||| ||||| |||| Sbjct 112561 TTGTTTAAATTTTGAGTTACAAT--CTTTGTG-ATTTCTTTTAATTTTTTAAAATTAAAT 112505 Query 65709 CGCTCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCA 65768 | | || | ||||||||||| | ||| | || || || || || || || || ||| Sbjct 112504 CTATTATTTTCAACAAACATGTTAAGTGCTATGGAAGCAAGGTTGCACACTGCCACTTCA 112445 Query 65769 TTAGCATCCGCA---TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCT 65825 | | || | | ||||| | | ||||||||||||||| ||||| || || || || Sbjct 112444 T---CTTCTGAAGTGTATTGCACAACCTCAGTGCAAAGATTGCTACATTTAATAGTGCCA 112388 Query 65826 AAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCA 65885 | ||||| ||||||||||||| ||||||| ||||||||||| | ||| |||| |||||| Sbjct 112387 AGATTTTTTTGATTACTCTTTCTGTTACAAGCATCCTTATACAACATGTATGGTGTACCA 112328 Query 65886 GTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTG 65945 || || | || | ||||||||| | ||||| | || |||| | | | | ||| Sbjct 112327 GTCTCTACTTGGGCTTCTATAATTGACTTCCATAACTCTTGAGCTCTGA--CTTGTTTTA 112270 Query 65946 T--ATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACA- 66002 | ||| |||||| ||| ||| | ||| | | ||| || || ||| || || || Sbjct 112269 TAAATCGTTTTTCTTCTTCATATTTGGCATATAGTTCTTCAAATTCCTCT-CCAAAGCAG 112211 Query 66003 TTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT---C 66059 | | | |||||||| |||| |||||||| | ||| || |||||||| Sbjct 112210 TCAGCGAGGCCAGGACAATCATGAGGACACATGAGACTCCAAACT---TCATCCTTTTCT 112154 Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGT 66119 |||| ||||||||| ||||| || ||||| | || ||| | ||||| | ||| | Sbjct 112153 ACTCTTTTCATAAACAGATCTGGTATCCATAAGGCATAAAACAGTTCTCTAGCTCTCATT 112094 Query 66120 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGT 66179 || || || || || ||||| || | ||| | ||| | | || || |||||| || Sbjct 112093 TCTTCCTTACCCGTGTTCTTCTTTAAATCCAAGAATTCAAATATGTCTGCATGCCAAGGC 112034 Query 66180 TCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 66239 || || || || || | | || || ||||||||||| || ||||||| ||||| || Sbjct 112033 TCTAAATAAATCGCAAATGCACCGGGACGTTTGTTTCCACCTTGATCTACATATCTGGCA 111974 Query 66240 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAG 66299 || || ||||| |||||||||||||| | | |||||| || ||||| || || | Sbjct 111973 GTATTGTTATACACTCTCAACATTGGCACTAGACCATTCGAGACCCCATTAGTGCCAGCT 111914 Query 66300 ATATAGCTTCCACTTGCACGAAT---ATTACTAATTGATAGACCTATTCCCCCTGCCATT 66356 || || || || | || || || || || |||||| || || || | Sbjct 111913 ATGTAAGAACCCTGAGCTCTGATGCAATGTGTA--TG-TAAACCTATGCCACCAGCAGAT 111857 Query 66357 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATC 66416 ||||| |||||||| ||| ||||||| |||||| | || || || || ||||| || || Sbjct 111856 TTAGAAATTAATGCACATTGTTTTAAAGTATCAAAAATACCTTCAATGCTATCGTCTTTC 111797 Query 66417 AT 66418 || Sbjct 111796 AT 111795 Score = 102 bits (112), Expect = 1e-16 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 66599 CTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 66658 ||| |||||||| |||||||| || ||| ||||||||||||| ||||||||||| ||||| Sbjct 111270 CTTATTGTTTATCTTCAACAAATATGATCTTTCCAAAGTTTTGAAACCAAAATAATTGTA 111211 Query 66659 TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTT 66709 | ||| |||| || |||| |||| | |||| | ||| ||||| | ||| Sbjct 111210 TTTAAAATCTCTATCATAAACAATAGCAGAGTCTAATTTGTCCTTGTTTTT 111160 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 66810 TTTTTTGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCC 66869 || || || ||||| |||| ||| |||| |||||||| || || | |||||||||||| Sbjct 110521 TTCTTGGTGTCTTTATGTAAATTGGATATTGCTATTCTGGCAGCCAAAATGGCATAATCG 110462 Query 66870 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 66929 ||||| | ||| || ||| ||||| ||||| || || ||| | || | || | ||| Sbjct 110461 GGATGATCTGTGGTCTTAGTAGCTGCAATTTCAGCAGCTAGATTATCAAGCTCAGCAGTT 110402 Query 66930 GTTACTCCATTATATATTCC 66949 ||||| ||| |||||| || Sbjct 110401 GTTACACCAGAATATATGCC 110382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658137349167560