Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heliconius_20melpomene_20melpomene_20[genbank_20GCA_5F000313835.2_20 2012-03-01] 4,309 sequences; 273,786,188 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1351 143 3e-29 >seq1351 Length=825266 Score = 143 bits (158), Expect = 3e-29 Identities = 168/225 (75%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATCCTCGttt 13951 ||||||| ||| ||||||||| || ||||| || ||||| ||||||| |||||||| Sbjct 601394 CCTCATCCCTAGAAATAAGTTCATTACTGAAA--GTCAATCCGGGCATCAGACCTCGTTT 601451 Query 13952 ttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAA 14011 ||| ||||||||||||| |||||| || || || ||||||||||||||||| ||||| Sbjct 601452 TTTCAACCAAAATATTGAAGCAAAGCTGCCTGAGAAAAATATTCCCTCAACTGCTGCAAA 601511 Query 14012 CGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTC 14071 || |||| ||||||||||| | ||| | ||| | ||||| | | ||||| || Sbjct 601512 AGCAATTATACGTTCTCCAAATGTAGCTGTCTTGCTGCCGATCCACTGTAACGCCCAGTC 601571 Query 14072 AGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAA 14116 | || || |||| | | | |||||||| ||||| ||||| Sbjct 601572 TGCCTTCTTCTTAACACATGGTAGAGTTTCAATTGCATTGAATAA 601616 Score = 105 bits (116), Expect = 6e-18 Identities = 178/255 (70%), Gaps = 7/255 (3%) Strand=Plus/Plus Query 14111 AAATAAATATTC-CTTCTCTTTAGTA---CTTGAAATGTATGTATCAATAAGTAAGCTAT 14166 ||| ||||||| | |||| |||| | ||| || ||||| ||||| | ||| | Sbjct 602195 AAACAAATATTTACCTCTCCTTAGGATCCCTT---ATATATGTGTCAATTAATAAAGAGT 602251 Query 14167 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCG 14226 |||| || || || | ||||||||||| || ||||||||||| ||||| || ||||| | Sbjct 602252 ACATCTCTGAATGAACATTTTCCATAGCAATTTGAAAACCATAGAAGCACCTGGCTTCAG 602311 Query 14227 ACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAG 14286 | ||| || || |||| | || |||| || |||||||| ||||||||| || Sbjct 602312 TCACTTGAACCTCTTGTGAAAAACGCTCCACCAAGTTCTCATTAACAATACCATCAGAAG 602371 Query 14287 CTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCC 14346 | ||||| ||||| || | | || ||||| | || ||| || || | | | | || Sbjct 602372 CCGCAAAGAATGCTAAAACATGCTTGATAAAATGTTTCTCACAATCTTTTAATGTCTCCC 602431 Query 14347 AATCGGATAAATCCT 14361 |||| | ||| |||| Sbjct 602432 AATCTGCTAAGTCCT 602446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479702160650600